HG10018170 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018170
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	crooked neck-like protein 1
Location	Chr04: 1245429 .. 1245797 (+)
RNA-Seq Expression	HG10018170
Synteny	HG10018170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCATCCAAAGATGCGGATCCAACCCTAGGCTACGTCGCTCGAAAGGATGCAGAGGTGAAGTTGTCGCGACCCACTAGGGTGAAGAACAAGACTCCGGCTCCAATTCAGATAACTGCAGAGCAGATCCTTCTTGAGGCTCGAGAACGACAGGAGGCGCAAATTAGACCGCCCAAACAAAAAATTACAGATCCGATTGAACTTGCTGATTGTCGCCTACGCAAGCGGAAGGAGTTCGAAGACCTTATACGCCTTGTCAGGTGGAATGTTAATGTTTGGATCAAGTATGCTCAATGGGAAGAGTCTCAAAAGGACTTCAATCGGGCTCGTCCTATTTGGGAGCGTGCCCTTGAGGTCGATAACTAA

mRNA sequence

ATGTCTTCATCCAAAGATGCGGATCCAACCCTAGGCTACGTCGCTCGAAAGGATGCAGAGGTGAAGTTGTCGCGACCCACTAGGGTGAAGAACAAGACTCCGGCTCCAATTCAGATAACTGCAGAGCAGATCCTTCTTGAGGCTCGAGAACGACAGGAGGCGCAAATTAGACCGCCCAAACAAAAAATTACAGATCCGATTGAACTTGCTGATTGTCGCCTACGCAAGCGGAAGGAGTTCGAAGACCTTATACGCCTTGTCAGGTGGAATGTTAATGTTTGGATCAAGTATGCTCAATGGGAAGAGTCTCAAAAGGACTTCAATCGGGCTCGTCCTATTTGGGAGCGTGCCCTTGAGGTCGATAACTAA

Coding sequence (CDS)

ATGTCTTCATCCAAAGATGCGGATCCAACCCTAGGCTACGTCGCTCGAAAGGATGCAGAGGTGAAGTTGTCGCGACCCACTAGGGTGAAGAACAAGACTCCGGCTCCAATTCAGATAACTGCAGAGCAGATCCTTCTTGAGGCTCGAGAACGACAGGAGGCGCAAATTAGACCGCCCAAACAAAAAATTACAGATCCGATTGAACTTGCTGATTGTCGCCTACGCAAGCGGAAGGAGTTCGAAGACCTTATACGCCTTGTCAGGTGGAATGTTAATGTTTGGATCAAGTATGCTCAATGGGAAGAGTCTCAAAAGGACTTCAATCGGGCTCGTCCTATTTGGGAGCGTGCCCTTGAGGTCGATAACTAA

Protein sequence

MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEVDN

Homology

[Close]

BLAST of HG10018170 vs. NCBI nr
Match: XP_022964730.1 (crooked neck-like protein 1 [Cucurbita moschata] >XP_022964731.1 crooked neck-like protein 1 [Cucurbita moschata])

HSP 1 Score: 220.7 bits (561), Expect = 6.9e-54
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 61  QKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERALEV 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of HG10018170 vs. NCBI nr
Match: XP_023519624.1 (crooked neck-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.7 bits (561), Expect = 6.9e-54
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 61  QKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERALEV 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of HG10018170 vs. NCBI nr
Match: KAG6583599.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.7 bits (561), Expect = 6.9e-54
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 61  QKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERALEV 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of HG10018170 vs. NCBI nr
Match: KAG7019301.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.7 bits (561), Expect = 6.9e-54
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 143 MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 202

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 203 QKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERALEV 262

Query: 121 D 122
           D
Sbjct: 263 D 263

[Close]

BLAST of HG10018170 vs. NCBI nr
Match: XP_022970297.1 (crooked neck-like protein 1 [Cucurbita maxima] >XP_022970298.1 crooked neck-like protein 1 [Cucurbita maxima] >XP_022970299.1 crooked neck-like protein 1 [Cucurbita maxima] >XP_022970301.1 crooked neck-like protein 1 [Cucurbita maxima] >XP_022970302.1 crooked neck-like protein 1 [Cucurbita maxima])

HSP 1 Score: 220.7 bits (561), Expect = 6.9e-54
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 61  QKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERALEV 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of HG10018170 vs. ExPASy Swiss-Prot
Match: P17886 (Protein crooked neck OS=Drosophila melanogaster OX=7227 GN=crn PE=2 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-24
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 22  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEF 81
           K+ +  +VKNK PA +QITAEQ+L EA+ER  E    PPKQKI+DP ELAD + RKRK F
Sbjct: 6   KMPKVAKVKNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISDPAELADYQQRKRKTF 65

Query: 82  EDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALE 120
           ED +R  R  V+ WIKYAQWEE Q++  RAR IWERAL+
Sbjct: 66  EDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALD 104

[Close]

BLAST of HG10018170 vs. ExPASy Swiss-Prot
Match: Q9BZJ0 (Crooked neck-like protein 1 OS=Homo sapiens OX=9606 GN=CRNKL1 PE=1 SV=4)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-23
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 22  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEF 81
           ++ +  +VKNK PA +QITAEQ+L EA+ER+ E    PP+QKITD  EL D +LRKRK F
Sbjct: 172 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 231

Query: 82  EDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEVD 122
           ED IR  R  ++ WIKYAQWEES K+  RAR I+ERAL+VD
Sbjct: 232 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVD 272

[Close]

BLAST of HG10018170 vs. ExPASy Swiss-Prot
Match: P63154 (Crooked neck-like protein 1 OS=Mus musculus OX=10090 GN=Crnkl1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-23
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 22  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEF 81
           ++ +  +VKNK PA +QITAEQ+L EA+ER+ E    PP+QKITD  EL D +LRKRK F
Sbjct: 11  RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 70

Query: 82  EDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEVD 122
           ED IR  R  ++ WIKYAQWEES K+  RAR I+ERAL+VD
Sbjct: 71  EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVD 111

[Close]

BLAST of HG10018170 vs. ExPASy Swiss-Prot
Match: P63155 (Crooked neck-like protein 1 OS=Rattus norvegicus OX=10116 GN=Crnkl1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-23
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 22  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEF 81
           ++ +  +VKNK PA +QITAEQ+L EA+ER+ E    PP+QKITD  EL D +LRKRK F
Sbjct: 11  RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 70

Query: 82  EDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEVD 122
           ED IR  R  ++ WIKYAQWEES K+  RAR I+ERAL+VD
Sbjct: 71  EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVD 111

[Close]

BLAST of HG10018170 vs. ExPASy Swiss-Prot
Match: Q5BDX1 (Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=clf1 PE=3 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-23
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 26  PTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIR 85
           P RVKNK PAP+QI+AEQ+L EA +RQE  ++ P Q+  D  EL + + RKRKEFED +R
Sbjct: 7   PPRVKNKAPAPVQISAEQLLREAVDRQEPSLQAPTQRFADLEELHEYQGRKRKEFEDYVR 66

Query: 86  LVRWNVNVWIKYAQWEESQKDFNRARPIWERALEVDN 123
             R N+N W++YA WE  QK+F RAR I+ERAL+VD+
Sbjct: 67  RNRINMNNWMRYAAWELEQKEFRRARSIFERALDVDS 103

[Close]

BLAST of HG10018170 vs. ExPASy TrEMBL
Match: A0A6J1HYQ8 (crooked neck-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111469305 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.3e-54
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 61  QKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERALEV 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of HG10018170 vs. ExPASy TrEMBL
Match: A0A6J1HLN2 (crooked neck-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464720 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.3e-54
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 61  QKITDPTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFNRARSVWERALEV 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of HG10018170 vs. ExPASy TrEMBL
Match: A0A6J1DG47 (crooked neck-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111020524 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.4e-54
Identity = 109/121 (90.08%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWN++VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 61  QKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERALEV 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of HG10018170 vs. ExPASy TrEMBL
Match: A0A5A7UA69 (Crooked neck-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00430 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.4e-54
Identity = 109/121 (90.08%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWN++VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 61  QKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERALEV 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of HG10018170 vs. ExPASy TrEMBL
Match: A0A0A0LSI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144280 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.4e-54
Identity = 109/121 (90.08%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDAEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           QKITDP ELAD RLRKRKEFEDLIR VRWN++VWIKYAQWEESQKDFNRAR +WERALEV
Sbjct: 61  QKITDPTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQWEESQKDFNRARSVWERALEV 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of HG10018170 vs. TAIR 10
Match: AT5G41770.1 (crooked neck protein, putative / cell cycle protein, putative )

HSP 1 Score: 191.0 bits (484), Expect = 5.5e-49
Identity = 93/120 (77.50%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 2   SSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQ 61
           S  KD+D TLGY+ RKD EVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQ
Sbjct: 3   SGGKDSDRTLGYMTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQ 62

Query: 62  KITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEVD 121
           KITD  EL+D RLR+RKEFED IR  RWN+ VW+KYAQWEESQKD+ RAR +WERA+E D
Sbjct: 63  KITDSTELSDYRLRRRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAIEGD 122

[Close]

BLAST of HG10018170 vs. TAIR 10
Match: AT5G45990.1 (crooked neck protein, putative / cell cycle protein, putative )

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-41
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 17  KDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRK 76
           KDAEVKL R TRVKNKTPAP+QITAEQIL EARERQEA+IRPPKQKITD  EL+D RLR+
Sbjct: 4   KDAEVKLPRTTRVKNKTPAPVQITAEQILREARERQEAEIRPPKQKITDSTELSDYRLRR 63

Query: 77  RKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALE 120
           RKEFED IR  RWN+ VW+KYA+WEESQ D+ RAR +WERALE
Sbjct: 64  RKEFEDQIRRARWNIQVWVKYAKWEESQMDYARARSVWERALE 106

[Close]

BLAST of HG10018170 vs. TAIR 10
Match: AT3G13210.1 (crooked neck protein, putative / cell cycle protein, putative )

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-38
Identity = 78/120 (65.00%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 1   MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPK 60
           M+S KD+D  LGY+ RKDAE+KL R T+VKNKTPAPIQITAEQIL EARERQEA+ RPP 
Sbjct: 1   MASGKDSDRNLGYMTRKDAELKLPRMTQVKNKTPAPIQITAEQILREARERQEAEFRPPN 60

Query: 61  QKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV 120
           Q ITD  EL+D RLR+RKEFED IR  R N  VW+KYA +E   K  N AR +W+RA+ +
Sbjct: 61  QTITDSAELSDYRLRRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSL 120

[Close]

BLAST of HG10018170 vs. TAIR 10
Match: AT3G51110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-31
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 26  PTRVKNKTPAPIQITAEQILLEARERQEAQI-RPPKQKITDPIELADCRLRKRKEFEDLI 85
           P  VKNKTPAP+QITAEQ+L EARER++++I RPPKQKITD  ELA+ RLR+RKEFED I
Sbjct: 5   PRMVKNKTPAPVQITAEQVLKEAREREDSRILRPPKQKITDSDELAEYRLRRRKEFEDQI 64

Query: 86  RLVRWNVNVWIKYAQWEESQKDFNRARPIWERALE 120
           R  + N  VW++YA WEESQKD +RAR +WERALE
Sbjct: 65  RGAKTNSQVWVRYADWEESQKDHDRARSVWERALE 99

The following BLAST results are available for this feature:

BLAST of HG10018170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964730.1	6.9e-54	90.91	crooked neck-like protein 1 [Cucurbita moschata] >XP_022964731.1 crooked neck-li...	[more]
XP_023519624.1	6.9e-54	90.91	crooked neck-like protein 1 [Cucurbita pepo subsp. pepo]	[more]
KAG6583599.1	6.9e-54	90.91	Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7019301.1	6.9e-54	90.91	Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022970297.1	6.9e-54	90.91	crooked neck-like protein 1 [Cucurbita maxima] >XP_022970298.1 crooked neck-like...	[more]

BLAST of HG10018170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P17886	1.2e-24	60.61	Protein crooked neck OS=Drosophila melanogaster OX=7227 GN=crn PE=2 SV=2	[more]
Q9BZJ0	1.0e-23	59.41	Crooked neck-like protein 1 OS=Homo sapiens OX=9606 GN=CRNKL1 PE=1 SV=4	[more]
P63154	1.0e-23	59.41	Crooked neck-like protein 1 OS=Mus musculus OX=10090 GN=Crnkl1 PE=1 SV=1	[more]
P63155	1.0e-23	59.41	Crooked neck-like protein 1 OS=Rattus norvegicus OX=10116 GN=Crnkl1 PE=2 SV=1	[more]
Q5BDX1	2.3e-23	56.70	Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 3816...	[more]

BLAST of HG10018170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYQ8	3.3e-54	90.91	crooked neck-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111469305 PE=4 SV=...	[more]
A0A6J1HLN2	3.3e-54	90.91	crooked neck-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464720 PE=4 S...	[more]
A0A6J1DG47	4.4e-54	90.08	crooked neck-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111020524 PE=4 ...	[more]
A0A5A7UA69	4.4e-54	90.08	Crooked neck-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0LSI4	4.4e-54	90.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144280 PE=4 SV=1	[more]

BLAST of HG10018170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41770.1	5.5e-49	77.50	crooked neck protein, putative / cell cycle protein, putative	[more]
AT5G45990.1	1.1e-41	78.64	crooked neck protein, putative / cell cycle protein, putative	[more]
AT3G13210.1	1.9e-38	65.00	crooked neck protein, putative / cell cycle protein, putative	[more]
AT3G51110.1	1.8e-31	69.47	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 27..122 e-value: 3.0E-8 score: 35.2
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 73..120
IPR045075	Pre-mRNA-splicing factor Syf1-like	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 6..120
None	No IPR available	PANTHER	PTHR11246:SF18	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 6..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018170.1	HG10018170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0005515	protein binding