HG10018029 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018029
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	STOREKEEPER protein-like
Location	Chr03: 29277428 .. 29277796 (+)
RNA-Seq Expression	HG10018029
Synteny	HG10018029

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGAGCGTGGGAACGAAGAAGAAGAAGAAAAGGAGCATTCGAAGAAGGAAAGGAAGAAGAAGAAAAGTAGAAAGGCATGGAATGGTGATGAAAATGTATCGTTATGTCCGATGATATTAACGGTGGGAATGAATTTTGATTTGTCGAATGATTTCATGAACAAAGAATTTGTTGAGTTTCTTTACAAGGAAGGAGTGGACATAGATTTGATGGATAGTGAAAGAGTTAGAGATTTGAAGAGGAAATATGGGGAAGTGGAAATTTGTAGAAGTGAATATGAATACAAGCAGGCCAAACTCTCTAGCAAGTTGGAAAAACTCAAGTCTGAACATTATCAAAAGGCTTTGGCAAAACTTTCTTAA

mRNA sequence

ATGGAGGAGGAGCGTGGGAACGAAGAAGAAGAAGAAAAGGAGCATTCGAAGAAGGAAAGGAAGAAGAAGAAAAGTAGAAAGGCATGGAATGGTGATGAAAATGTATCGTTATGTCCGATGATATTAACGGTGGGAATGAATTTTGATTTGTCGAATGATTTCATGAACAAAGAATTTGTTGAGTTTCTTTACAAGGAAGGAGTGGACATAGATTTGATGGATAGTGAAAGAGTTAGAGATTTGAAGAGGAAATATGGGGAAGTGGAAATTTGTAGAAGTGAATATGAATACAAGCAGGCCAAACTCTCTAGCAAGTTGGAAAAACTCAAGTCTGAACATTATCAAAAGGCTTTGGCAAAACTTTCTTAA

Coding sequence (CDS)

ATGGAGGAGGAGCGTGGGAACGAAGAAGAAGAAGAAAAGGAGCATTCGAAGAAGGAAAGGAAGAAGAAGAAAAGTAGAAAGGCATGGAATGGTGATGAAAATGTATCGTTATGTCCGATGATATTAACGGTGGGAATGAATTTTGATTTGTCGAATGATTTCATGAACAAAGAATTTGTTGAGTTTCTTTACAAGGAAGGAGTGGACATAGATTTGATGGATAGTGAAAGAGTTAGAGATTTGAAGAGGAAATATGGGGAAGTGGAAATTTGTAGAAGTGAATATGAATACAAGCAGGCCAAACTCTCTAGCAAGTTGGAAAAACTCAAGTCTGAACATTATCAAAAGGCTTTGGCAAAACTTTCTTAA

Protein sequence

MEEERGNEEEEEKEHSKKERKKKKSRKAWNGDENVSLCPMILTVGMNFDLSNDFMNKEFVEFLYKEGVDIDLMDSERVRDLKRKYGEVEICRSEYEYKQAKLSSKLEKLKSEHYQKALAKLS

Homology

[Close]

BLAST of HG10018029 vs. NCBI nr
Match: KAG6585874.1 (STOREKEEPER protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-15
Identity = 43/73 (58.90%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 48  FDLSNDFMNKEFVEFLYKEGVDIDLMDSERVRDLKRKYGEVEICRSEYEYKQAKLSSKLE 107
           F++SND M +EF  FL+ EGVD++L++SERVR +KRK+GEV++CRS +EYKQAKL+  +E
Sbjct: 125 FEVSNDLMCEEFDGFLFHEGVDVELLESERVRSMKRKFGEVQLCRSRFEYKQAKLAKNME 184

Query: 108 KLKSEHYQKALAK 121
           +LK +HY +AL K
Sbjct: 185 RLKYDHYNRALVK 197

[Close]

BLAST of HG10018029 vs. NCBI nr
Match: XP_022951916.1 (STOREKEEPER protein-like [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-15
Identity = 43/73 (58.90%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 48  FDLSNDFMNKEFVEFLYKEGVDIDLMDSERVRDLKRKYGEVEICRSEYEYKQAKLSSKLE 107
           F++SND M +EF  FL+ EGVD++L++SERVR +KRK+GEV++CRS +EYKQAKL+  +E
Sbjct: 125 FEVSNDLMCEEFDGFLFHEGVDVELLESERVRSMKRKFGEVQLCRSRFEYKQAKLAKNME 184

Query: 108 KLKSEHYQKALAK 121
           +LK +HY +AL K
Sbjct: 185 RLKYDHYNRALVK 197

[Close]

BLAST of HG10018029 vs. NCBI nr
Match: XP_023521142.1 (STOREKEEPER protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-15
Identity = 43/73 (58.90%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 48  FDLSNDFMNKEFVEFLYKEGVDIDLMDSERVRDLKRKYGEVEICRSEYEYKQAKLSSKLE 107
           F++SND M +EF  FL+ EGVD++L++SERVR +KRK+GEV++CRS +EYKQAKL+  +E
Sbjct: 125 FEVSNDLMCEEFDGFLFHEGVDVELLESERVRSMKRKFGEVQLCRSRFEYKQAKLAKNME 184

Query: 108 KLKSEHYQKALAK 121
           +LK +HY +AL K
Sbjct: 185 RLKYDHYNRALVK 197

[Close]

BLAST of HG10018029 vs. ExPASy TrEMBL
Match: A0A6J1GIT7 (STOREKEEPER protein-like OS=Cucurbita moschata OX=3662 GN=LOC111454656 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.0e-16
Identity = 43/73 (58.90%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 48  FDLSNDFMNKEFVEFLYKEGVDIDLMDSERVRDLKRKYGEVEICRSEYEYKQAKLSSKLE 107
           F++SND M +EF  FL+ EGVD++L++SERVR +KRK+GEV++CRS +EYKQAKL+  +E
Sbjct: 125 FEVSNDLMCEEFDGFLFHEGVDVELLESERVRSMKRKFGEVQLCRSRFEYKQAKLAKNME 184

Query: 108 KLKSEHYQKALAK 121
           +LK +HY +AL K
Sbjct: 185 RLKYDHYNRALVK 197

The following BLAST results are available for this feature:

BLAST of HG10018029 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585874.1	1.7e-15	58.90	STOREKEEPER protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022951916.1	1.7e-15	58.90	STOREKEEPER protein-like [Cucurbita moschata]	[more]
XP_023521142.1	1.7e-15	58.90	STOREKEEPER protein-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10018029 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GIT7	8.0e-16	58.90	STOREKEEPER protein-like OS=Cucurbita moschata OX=3662 GN=LOC111454656 PE=3 SV=1	[more]

BLAST of HG10018029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..28
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018029.1	HG10018029.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated