HG10017957 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017957
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 28052361 .. 28053933 (-)
RNA-Seq ExpressionHG10017957
SyntenyHG10017957
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTAAAAGTTGCAACATCAATGATCATTTCTTTTGTGTTTGGCAAGAGGATCTCGGATTCTCAGTGGAGGATTTTTCAAAGAAACATAAAGTAAAATTTAGTGCTCAAACACTGCTATGGCTAGATAAGGAGTTGCAAGATCTCTCTAAAGAAAAGCCACACGATTTCTTCTCCAAAACGACCTTTTTAAAACAGGGAGTTGTTCAACGGGCAAAATTCAAATCCAAGGTGGAATGGTTTCCAGCTGGTGCAAAACATCAAGGATGGAAAACCGTTGCTGAATAGCTCTTGTGTGAAGGTTTGTTGTTCCTCGCCTAGTTTGAGCTTTAAGGTGGAGGAGGATATTTCCAACAAGGGTGATATTTCTTCAAGAAGATCATATTCTGACGTAGTCATCAACTCAGGAGAATATGTAAAAACAGAAGCTGCAAATGTGGAAGAAAATGCTGAATATAGCCAAAGAAAGAGGATCCCTGCTTTTCCAATATGGATTAGAAAAGAAAAAGAAATGTTGAATCTAAACTTGAACTCTTTGTCCGTGGTTTCAAGATTAATGGAATCCTACACTTGGCCGGAAGTCAAATCCAACTTAGAAGACTTTTTTGAAGGAAATGTTTCAACCAATCCTTTTTGTGACGACAAGGCATTAATCAAGTTTCATAAAGAACTTGACATGAAGTTCTTGGAAGGTAAATGGTATGAATATAGGTGGATGCATCTTAAGATCGAACACTGATCTAAAGAATTACATTCCATCCCAAAATTCATCTCAAGTAATGGAGGTTGGATTGCAATCAAGAACTTACCTTTACTGTTTTGGAAGAATTCAGTTTTTGAAGCTATTGAACATCATTTGGGTGGTTTAGTAGAGATCTCTTCGAGAATTCTAAATTGTTTGTATGTTTCATCAACTTGTATTAAGATTAAAGAGAACAATTATGGGTTCATTCCAGCTTCTTTGGACATTGAAGACTCTTTGTTAGGAAAAGTGGTTATTTCTTTTGAAAATAGGGATCCTTTGATCTCCCACAACAGACAGAGGGTTGCAAAGAATTGTTTTGGGCCAAATGACTTTTCGAATTCCCTGGATAAACTTCGAATTAAAGAAGCATTGATGTATGAAGAATTATTTTTGGTAAACAAAAGGGAAGATGAATTCAAATTAGCAGCAGAAAATCAAAAGGTTTTAATATCGAAAAACGAAGCAACATCCTTGGATATTGCAAGGCCATCTGAAGAGGCATTTACTCTAGCCTATAGTCGCTTCCATTTATTGTCCAATTCAAAAAGAGAAAAATCCAGCCGGAGCAACAAGGAGAGTAATGGCACTGACATTGAAAATTCAATTCCAGAGGAAGAAGACACTTCAACTTCCTTAGACCCAAATTTTCGTGGAGAAATTTCAAAGGCTGTCATTAATATTAATAATGCAACAAAAGTCGAAAAGACTACCTCTGAGTTCTCGTCAGAATTTCCTTCAAATTTGGATTCGATCGGTCAAGAAGAATTAGTTGAAAAATTAGTAGAAGATTTAGTTAAAGATCTTGAGCCAGAGCAAGATCCTTAA

mRNA sequence

ATGGAGATTAAAAGTTGCAACATCAATGATCATTTCTTTTGTGTTTGGCAAGAGGATCTCGGATTCTCAGTGGAGGATTTTTCAAAGAAACATAAACTGGTGCAAAACATCAAGGATGGAAAACCGTTGCTGAATAGCTCTTGTGTGAAGGTTTGTTGTTCCTCGCCTAGTTTGAGCTTTAAGGTGGAGGAGGATATTTCCAACAAGGGTGATATTTCTTCAAGAAGATCATATTCTGACGTAGTCATCAACTCAGGAGAATATGTAAAAACAGAAGCTGCAAATGTGGAAGAAAATGCTGAATATAGCCAAAGAAAGAGGATCCCTGCTTTTCCAATATGGATTAGAAAAGAAAAAGAAATGTTGAATCTAAACTTGAACTCTTTGTCCGTGGTTTCAAGATTAATGGAATCCTACACTTGGCCGGAAGTCAAATCCAACTTAGAAGACTTTTTTGAAGGAAATGTTTCAACCAATCCTTTTTGTGACGACAAGGCATTAATCAAGTTTCATAAAGAACTTGACATGAAGTTCTTGGAAGTTTTTGAAGCTATTGAACATCATTTGGGTGGTTTAGTAGAGATCTCTTCGAGAATTCTAAATTGTTTGTATGTTTCATCAACTTGTATTAAGATTAAAGAGAACAATTATGGGTTCATTCCAGCTTCTTTGGACATTGAAGACTCTTTGTTAGGAAAAGTGGTTATTTCTTTTGAAAATAGGGATCCTTTGATCTCCCACAACAGACAGAGGGTTGCAAAGAATTGTTTTGGGCCAAATGACTTTTCGAATTCCCTGGATAAACTTCGAATTAAAGAAGCATTGATGTATGAAGAATTATTTTTGGTAAACAAAAGGGAAGATGAATTCAAATTAGCAGCAGAAAATCAAAAGGTTTTAATATCGAAAAACGAAGCAACATCCTTGGATATTGCAAGGCCATCTGAAGAGGCATTTACTCTAGCCTATAGTCGCTTCCATTTATTGTCCAATTCAAAAAGAGAAAAATCCAGCCGGAGCAACAAGGAGAGTAATGGCACTGACATTGAAAATTCAATTCCAGAGGAAGAAGACACTTCAACTTCCTTAGACCCAAATTTTCGTGGAGAAATTTCAAAGGCTGTCATTAATATTAATAATGCAACAAAAGTCGAAAAGACTACCTCTGAGTTCTCGTCAGAATTTCCTTCAAATTTGGATTCGATCGGTCAAGAAGAATTAGTTGAAAAATTAGTAGAAGATTTAGTTAAAGATCTTGAGCCAGAGCAAGATCCTTAA

Coding sequence (CDS)

ATGGAGATTAAAAGTTGCAACATCAATGATCATTTCTTTTGTGTTTGGCAAGAGGATCTCGGATTCTCAGTGGAGGATTTTTCAAAGAAACATAAACTGGTGCAAAACATCAAGGATGGAAAACCGTTGCTGAATAGCTCTTGTGTGAAGGTTTGTTGTTCCTCGCCTAGTTTGAGCTTTAAGGTGGAGGAGGATATTTCCAACAAGGGTGATATTTCTTCAAGAAGATCATATTCTGACGTAGTCATCAACTCAGGAGAATATGTAAAAACAGAAGCTGCAAATGTGGAAGAAAATGCTGAATATAGCCAAAGAAAGAGGATCCCTGCTTTTCCAATATGGATTAGAAAAGAAAAAGAAATGTTGAATCTAAACTTGAACTCTTTGTCCGTGGTTTCAAGATTAATGGAATCCTACACTTGGCCGGAAGTCAAATCCAACTTAGAAGACTTTTTTGAAGGAAATGTTTCAACCAATCCTTTTTGTGACGACAAGGCATTAATCAAGTTTCATAAAGAACTTGACATGAAGTTCTTGGAAGTTTTTGAAGCTATTGAACATCATTTGGGTGGTTTAGTAGAGATCTCTTCGAGAATTCTAAATTGTTTGTATGTTTCATCAACTTGTATTAAGATTAAAGAGAACAATTATGGGTTCATTCCAGCTTCTTTGGACATTGAAGACTCTTTGTTAGGAAAAGTGGTTATTTCTTTTGAAAATAGGGATCCTTTGATCTCCCACAACAGACAGAGGGTTGCAAAGAATTGTTTTGGGCCAAATGACTTTTCGAATTCCCTGGATAAACTTCGAATTAAAGAAGCATTGATGTATGAAGAATTATTTTTGGTAAACAAAAGGGAAGATGAATTCAAATTAGCAGCAGAAAATCAAAAGGTTTTAATATCGAAAAACGAAGCAACATCCTTGGATATTGCAAGGCCATCTGAAGAGGCATTTACTCTAGCCTATAGTCGCTTCCATTTATTGTCCAATTCAAAAAGAGAAAAATCCAGCCGGAGCAACAAGGAGAGTAATGGCACTGACATTGAAAATTCAATTCCAGAGGAAGAAGACACTTCAACTTCCTTAGACCCAAATTTTCGTGGAGAAATTTCAAAGGCTGTCATTAATATTAATAATGCAACAAAAGTCGAAAAGACTACCTCTGAGTTCTCGTCAGAATTTCCTTCAAATTTGGATTCGATCGGTCAAGAAGAATTAGTTGAAAAATTAGTAGAAGATTTAGTTAAAGATCTTGAGCCAGAGCAAGATCCTTAA

Protein sequence

MEIKSCNINDHFFCVWQEDLGFSVEDFSKKHKLVQNIKDGKPLLNSSCVKVCCSSPSLSFKVEEDISNKGDISSRRSYSDVVINSGEYVKTEAANVEENAEYSQRKRIPAFPIWIRKEKEMLNLNLNSLSVVSRLMESYTWPEVKSNLEDFFEGNVSTNPFCDDKALIKFHKELDMKFLEVFEAIEHHLGGLVEISSRILNCLYVSSTCIKIKENNYGFIPASLDIEDSLLGKVVISFENRDPLISHNRQRVAKNCFGPNDFSNSLDKLRIKEALMYEELFLVNKREDEFKLAAENQKVLISKNEATSLDIARPSEEAFTLAYSRFHLLSNSKREKSSRSNKESNGTDIENSIPEEEDTSTSLDPNFRGEISKAVININNATKVEKTTSEFSSEFPSNLDSIGQEELVEKLVEDLVKDLEPEQDP
Homology
[Close]
BLAST of HG10017957 vs. NCBI nr
Match: XP_038904899.1 (uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida])

HSP 1 Score: 62.8 bits (151), Expect = 8.4e-06
Identity = 38/137 (27.74%), Postives = 68/137 (49.64%), Query Frame = 0 

Query: 174 LDMKFLEVFEAIEHHLGGLVEISSRILNCLYVSSTCIKIKENNYGFIPASLDIEDSLLGK 233
           LD    + FEAI  + GGL  I+  ILN + V    IK+KEN  GF+PA++++ +   G 
Sbjct: 262 LDYWCKQTFEAIGKYFGGLESIAMEILNLIKVLDAIIKVKENLCGFVPATIEVSNEKRGS 321

Query: 234 VVISFENRDPLISHNRQRVAKNCFGPNDFSNSLDKLRIKEALMYEELFLVNKREDEFKLA 293
           + ++F +   + + N     K     +DF+N +D +R+ E    E ++          L 
Sbjct: 322 IYLNFGD---ISTSNPPSKVKGDLFESDFTNPIDLIRLNEVKCAEGIYCDPLNSKFNFLF 381

Query: 294 AENQKVLISKNEATSLD 311
           + N+ +  S++    +D
Sbjct: 382 SSNRNIKSSRSPGVFVD 395

The following BLAST results are available for this feature:
BLAST of HG10017957 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904899.18.4e-0627.74uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida][more]
BLAST of HG10017957 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10017957 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10017957 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 334..366

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017957.1HG10017957.1mRNA