HG10017954 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017954
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 28044593 .. 28044790 (-)
RNA-Seq ExpressionHG10017954
SyntenyHG10017954
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCATTTGATGAGAACACCGAGCCATGTAATTTGGGGGATGACAGAAATGATCCATTGGGTGCATGCAATGTCCAGTCCATATGTACACCACATCATGGATATGAGCAACCTTATGGACCACAGCCAGACCCAACATCATTTGTTCATATTCTTACTCCACCTACTCCCATCCCACCAGTGTCAATGCCCTGA

mRNA sequence

ATGTTTGCATTTGATGAGAACACCGAGCCATGTAATTTGGGGGATGACAGAAATGATCCATTGGGTGCATGCAATGTCCAGTCCATATGTACACCACATCATGGATATGAGCAACCTTATGGACCACAGCCAGACCCAACATCATTTGTTCATATTCTTACTCCACCTACTCCCATCCCACCAGTGTCAATGCCCTGA

Coding sequence (CDS)

ATGTTTGCATTTGATGAGAACACCGAGCCATGTAATTTGGGGGATGACAGAAATGATCCATTGGGTGCATGCAATGTCCAGTCCATATGTACACCACATCATGGATATGAGCAACCTTATGGACCACAGCCAGACCCAACATCATTTGTTCATATTCTTACTCCACCTACTCCCATCCCACCAGTGTCAATGCCCTGA

Protein sequence

MFAFDENTEPCNLGDDRNDPLGACNVQSICTPHHGYEQPYGPQPDPTSFVHILTPPTPIPPVSMP
Homology
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BLAST of HG10017954 vs. NCBI nr
Match: XP_038880853.1 (uncharacterized protein LOC120072537 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-04
Identity = 30/68 (44.12%), Postives = 38/68 (55.88%), Query Frame = 0 

Query: 1   MFAFDENTEPCNLGDDRNDPLGACNVQSICTPH----HGYEQPYGPQPDPTSFVHILTPP 60
           M + D++ EPCNLGDDR++     N +  CT      HGY Q  G Q  PT  +H+ TPP
Sbjct: 122 MSSLDDHIEPCNLGDDRSEAWFGRNSEPRCTSQFNTKHGYGQSSGLQTSPTPNIHVPTPP 181

Query: 61  TPIPPVSM 65
             I PV M
Sbjct: 182 AFITPVVM 189

The following BLAST results are available for this feature:
BLAST of HG10017954 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880853.13.5e-0444.12uncharacterized protein LOC120072537 [Benincasa hispida][more]
BLAST of HG10017954 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10017954 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10017954 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017954.1HG10017954.1mRNA