HG10017922 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017922
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Retrotransposon protein
Location	Chr03: 26076798 .. 26077124 (-)
RNA-Seq Expression	HG10017922
Synteny	HG10017922

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCCTGCATGTAGTAGGTTTGGCTGGAATGAGGAACAAAGGTGCATTGAGGTAGAGAAATCGGTGTTCGATGAGTTGGTGAAGGTAAGACGACAAATATAATTCATAATTTCTAGAATAATAAAATATAATATAATTACATTTGTTAACTCCATGCAGGGACACCCTGATGCTCAAGTTCTACTGAACAAATCATTCCCTTACTACGATGACTTGACAATTGTATTTGGTAGAGATAGAGCTATCAGTGGTAGAGTTAAGATGCTCGTTGACATGGGCTCACAGACTGCAAAGGATATGCAGGAAGATGACTTTGGAAATTAA

mRNA sequence

ATGGGGCCTGCATGTAGTAGGTTTGGCTGGAATGAGGAACAAAGGTGCATTGAGGTAGAGAAATCGGTGTTCGATGAGTTGGTGAAGGGACACCCTGATGCTCAAGTTCTACTGAACAAATCATTCCCTTACTACGATGACTTGACAATTGTATTTGGTAGAGATAGAGCTATCAGTGGTAGAGTTAAGATGCTCGTTGACATGGGCTCACAGACTGCAAAGGATATGCAGGAAGATGACTTTGGAAATTAA

Coding sequence (CDS)

ATGGGGCCTGCATGTAGTAGGTTTGGCTGGAATGAGGAACAAAGGTGCATTGAGGTAGAGAAATCGGTGTTCGATGAGTTGGTGAAGGGACACCCTGATGCTCAAGTTCTACTGAACAAATCATTCCCTTACTACGATGACTTGACAATTGTATTTGGTAGAGATAGAGCTATCAGTGGTAGAGTTAAGATGCTCGTTGACATGGGCTCACAGACTGCAAAGGATATGCAGGAAGATGACTTTGGAAATTAA

Protein sequence

MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISGRVKMLVDMGSQTAKDMQEDDFGN

Homology

[Close]

BLAST of HG10017922 vs. NCBI nr
Match: TYK10886.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 4.1e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
          MGPACSRFGWNEEQ+CIE +KSVFD+ VKGHP+A+ LLNKSFPY+ DL I+FGRDRA  G
Sbjct: 2  MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 61

Query: 61 RVKMLVDMGSQTAKDMQEDD 81
          R K  V+MG Q A+D +EDD
Sbjct: 62 RCKTPVEMGLQIARDTEEDD 81

[Close]

BLAST of HG10017922 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 5.4e-26
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
          MGPACSRFGWNEEQ+CIE +KSVFD+ VKGHP+A+ LLNKSFPY+ DL I+FGRDRA  G
Sbjct: 1  MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 60

Query: 61 RVKMLVDMGSQTAKDMQEDD 81
          R K  ++MG Q A+D +EDD
Sbjct: 61 RCKTPIEMGLQIARDTEEDD 80

[Close]

BLAST of HG10017922 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 5.4e-26
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
          MGPACSRFGWNEEQ+CIE +KSVFD+ VKGHP+A+ LLNKSFPY+ DL I+FGRDRA  G
Sbjct: 2  MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 61

Query: 61 RVKMLVDMGSQTAKDMQEDD 81
          R K  ++MG Q A+D +EDD
Sbjct: 62 RCKTPIEMGLQIARDTEEDD 81

[Close]

BLAST of HG10017922 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1   MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
           MGPACS FGWNE Q+CIEVEK VFD+ VKGHP+AQ LLNK FPY+ DL +VFGRDRA  G
Sbjct: 193 MGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGG 252

Query: 61  RVKMLVDMGSQTAKDMQEDD 81
           R K  V+M SQTA+D +EDD
Sbjct: 253 RCKTPVEMSSQTARDTEEDD 272

[Close]

BLAST of HG10017922 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1   MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
           MGPACSRFGWNEE++CIE EKSVFD+ VKGHP+A+ LLNK F Y+ DL IVFGRD+A  G
Sbjct: 86  MGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGG 145

Query: 61  RVKMLVDMGSQTAKDMQEDD 81
           R K  V+M SQTA+D +EDD
Sbjct: 146 RCKPFVEMASQTARDTEEDD 165

[Close]

BLAST of HG10017922 vs. ExPASy TrEMBL
Match: A0A5D3CKC1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00580 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
          MGPACSRFGWNEEQ+CIE +KSVFD+ VKGHP+A+ LLNKSFPY+ DL I+FGRDRA  G
Sbjct: 2  MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 61

Query: 61 RVKMLVDMGSQTAKDMQEDD 81
          R K  V+MG Q A+D +EDD
Sbjct: 62 RCKTPVEMGLQIARDTEEDD 81

[Close]

BLAST of HG10017922 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
          MGPACSRFGWNEEQ+CIE +KSVFD+ VKGHP+A+ LLNKSFPY+ DL I+FGRDRA  G
Sbjct: 2  MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 61

Query: 61 RVKMLVDMGSQTAKDMQEDD 81
          R K  ++MG Q A+D +EDD
Sbjct: 62 RCKTPIEMGLQIARDTEEDD 81

[Close]

BLAST of HG10017922 vs. ExPASy TrEMBL
Match: A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
          MGPACSRFGWNEEQ+CIE +KSVFD+ VKGHP+A+ LLNKSFPY+ DL I+FGRDRA  G
Sbjct: 1  MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 60

Query: 61 RVKMLVDMGSQTAKDMQEDD 81
          R K  ++MG Q A+D +EDD
Sbjct: 61 RCKTPIEMGLQIARDTEEDD 80

[Close]

BLAST of HG10017922 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.6e-26
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1   MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
           MGPACS FGWNE Q+CIEVEK VFD+ VKGHP+AQ LLNK FPY+ DL +VFGRDRA  G
Sbjct: 193 MGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGG 252

Query: 61  RVKMLVDMGSQTAKDMQEDD 81
           R K  V+M SQTA+D +EDD
Sbjct: 253 RCKTPVEMSSQTARDTEEDD 272

[Close]

BLAST of HG10017922 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1   MGPACSRFGWNEEQRCIEVEKSVFDELVKGHPDAQVLLNKSFPYYDDLTIVFGRDRAISG 60
           MGPACSRFGWNEE++CIE EKSVFD+ VKGHP+A+ LLNK F Y+ DL IVFGRD+A  G
Sbjct: 86  MGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGG 145

Query: 61  RVKMLVDMGSQTAKDMQEDD 81
           R K  V+M SQTA+D +EDD
Sbjct: 146 RCKPFVEMASQTARDTEEDD 165

The following BLAST results are available for this feature:

BLAST of HG10017922 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10886.1	4.1e-26	71.25	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008460440.1	5.4e-26	70.00	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]
KAA0067273.1	5.4e-26	70.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07921.1	1.6e-25	71.25	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
TYJ96933.1	2.1e-25	70.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of HG10017922 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017922 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CKC1	2.0e-26	71.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGQ0	2.6e-26	70.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CC17	2.6e-26	70.00	uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=...	[more]
A0A5D3C7T4	7.6e-26	71.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BC95	1.0e-25	70.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10017922 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 4..75
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 4..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017922.1	HG10017922.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding