HG10017911 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017911
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMuDRA-like transposase
LocationChr03: 25878359 .. 25878814 (-)
RNA-Seq ExpressionHG10017911
SyntenyHG10017911
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCATGTGAGGGATAACCGATTAGACGGTATTGTCAACCTTCACACACAGGAATGCATGTGTAAAGAGTTTGAGGCACTTGGTATCCCATGTTCTCACGCAATCGTGGCGGCCCGAGAACATAATATCCCCATCGAGCGTCTTTGTAGTCGATTTTATACCGTTGAATCCCTCATGACTGCGTACGCGAAGCCGGTTAATCCACTTGGACATATGTCTGAATGGACGAAACCAGCTGACTATGTTGAACAAAATATCCTTCCTCCAAAGAGAATTGCCCAAGTAGGTCGACAAAGAGTACGACGAATACCATCTAGAGGAGAACATCCCAAACTGATAAAAAATGAAAGGTGTGGTAATTATGGTCATAACCGACAAAACTGTAACGAACCGCTTACAACCAGAAGACTTGCTGAAGACAGTGAAAATGTGTGCAACGTTACCTGTACTTGA

mRNA sequence

ATGGTCCATGTGAGGGATAACCGATTAGACGGTATTGTCAACCTTCACACACAGGAATGCATGTGTAAAGAGTTTGAGGCACTTGGTATCCCATGTTCTCACGCAATCGTGGCGGCCCGAGAACATAATATCCCCATCGAGCGTCTTTGTAGTCGATTTTATACCGTTGAATCCCTCATGACTGCGTACGCGAAGCCGGTTAATCCACTTGGACATATGTCTGAATGGACGAAACCAGCTGACTATGTTGAACAAAATATCCTTCCTCCAAAGAGAATTGCCCAAGTAGGTCGACAAAGAGTACGACGAATACCATCTAGAGGAGAACATCCCAAACTGATAAAAAATGAAAGGTGTGGTAATTATGGTCATAACCGACAAAACTGTAACGAACCGCTTACAACCAGAAGACTTGCTGAAGACAGTGAAAATGTGTGCAACGTTACCTGTACTTGA

Coding sequence (CDS)

ATGGTCCATGTGAGGGATAACCGATTAGACGGTATTGTCAACCTTCACACACAGGAATGCATGTGTAAAGAGTTTGAGGCACTTGGTATCCCATGTTCTCACGCAATCGTGGCGGCCCGAGAACATAATATCCCCATCGAGCGTCTTTGTAGTCGATTTTATACCGTTGAATCCCTCATGACTGCGTACGCGAAGCCGGTTAATCCACTTGGACATATGTCTGAATGGACGAAACCAGCTGACTATGTTGAACAAAATATCCTTCCTCCAAAGAGAATTGCCCAAGTAGGTCGACAAAGAGTACGACGAATACCATCTAGAGGAGAACATCCCAAACTGATAAAAAATGAAAGGTGTGGTAATTATGGTCATAACCGACAAAACTGTAACGAACCGCTTACAACCAGAAGACTTGCTGAAGACAGTGAAAATGTGTGCAACGTTACCTGTACTTGA

Protein sequence

MVHVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMTAYAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGNYGHNRQNCNEPLTTRRLAEDSENVCNVTCT
Homology
BLAST of HG10017911 vs. NCBI nr
Match: XP_038896508.1 (uncharacterized protein LOC120084759 [Benincasa hispida])

HSP 1 Score: 227.6 bits (579), Expect = 7.0e-56
Identity = 104/143 (72.73%), Postives = 122/143 (85.31%), Query Frame = 0

Query: 2   VHVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMT 61
           VHVRDNRLD IVNLHT+ECMCKEF++LGIPCSHAIVAA+E NIPI  LCSRFYTV+SLMT
Sbjct: 180 VHVRDNRLDNIVNLHTKECMCKEFDSLGIPCSHAIVAAKERNIPINGLCSRFYTVDSLMT 239

Query: 62  AYAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGN 121
           AYA+P+NPLGH+SEW +P+ Y+E+ ILPPK + Q GR RVRRIPSRGE  + +K  RCGN
Sbjct: 240 AYAEPINPLGHISEWKRPSGYIEKIILPPKFVPQAGRWRVRRIPSRGEFHRQMKYGRCGN 299

Query: 122 YGHNRQNCNEPLTTRRLAEDSEN 145
           YGHNRQNC EPLTT R  E++ +
Sbjct: 300 YGHNRQNCTEPLTTVRRTENARD 322

BLAST of HG10017911 vs. NCBI nr
Match: XP_038891632.1 (uncharacterized protein LOC120081024 [Benincasa hispida])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 105/143 (73.43%), Postives = 123/143 (86.01%), Query Frame = 0

Query: 2   VHVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMT 61
           VHVR+NRLDGI+NLHT+EC CKEFE+LGIPCSHAIVAARE NIPI  LCSRFYTV+SLMT
Sbjct: 78  VHVRNNRLDGIINLHTKECTCKEFESLGIPCSHAIVAARERNIPIHGLCSRFYTVDSLMT 137

Query: 62  AYAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGN 121
           AYA+P+NPLGH+SEW +P+ YVE+ ILPPK + Q GR+RVRRIPSRGE  + +K  RCGN
Sbjct: 138 AYAEPINPLGHISEWKRPSGYVEKIILPPKFVPQAGRRRVRRIPSRGEFCRQMKCGRCGN 197

Query: 122 YGHNRQNCNEPLTTRRLAEDSEN 145
           YGHN QNC EPLTT R A++S +
Sbjct: 198 YGHNLQNCTEPLTTVRRAKNSRD 220

BLAST of HG10017911 vs. NCBI nr
Match: XP_038887233.1 (uncharacterized protein LOC120077423 [Benincasa hispida])

HSP 1 Score: 221.1 bits (562), Expect = 6.5e-54
Identity = 102/143 (71.33%), Postives = 120/143 (83.92%), Query Frame = 0

Query: 2   VHVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMT 61
           VHVRDNRLDGIVNLHT+EC CKEF++LGIPCSHAIVA +E NIPI+ LCSRFYTV+SLMT
Sbjct: 32  VHVRDNRLDGIVNLHTKECTCKEFDSLGIPCSHAIVATKERNIPIQSLCSRFYTVDSLMT 91

Query: 62  AYAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGN 121
            YA+P+NPLGH+ EW +   YVE+ ILPPK +AQVGR RVRRIPSRGE  + +K  RCGN
Sbjct: 92  TYAEPINPLGHIFEWKRAPGYVEKTILPPKFVAQVGRWRVRRIPSRGEVHRQMKCGRCGN 151

Query: 122 YGHNRQNCNEPLTTRRLAEDSEN 145
           YGHNRQNC+E LTT R  +++ N
Sbjct: 152 YGHNRQNCSESLTTIRRTKNARN 174

BLAST of HG10017911 vs. NCBI nr
Match: XP_038902455.1 (uncharacterized protein LOC120089103 [Benincasa hispida])

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-52
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 0

Query: 2   VHVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMT 61
           VHV+DNRLD I+NLHT+EC CKEF +LGIPC HAI AA+E NIPI  LCSRFY V+SLMT
Sbjct: 44  VHVKDNRLDDIINLHTKECTCKEFNSLGIPCLHAIFAAKERNIPIHSLCSRFYIVDSLMT 103

Query: 62  AYAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGN 121
           AYA+P+NPLGH+SEW +P+ YVE+ ILP K + QVGR+RVRRIPSRGE  + +K   CGN
Sbjct: 104 AYAEPINPLGHISEWKRPSGYVEKIILPSKFVPQVGRRRVRRIPSRGEFRRQMKCGHCGN 163

Query: 122 YGHNRQNCNEPLTTRRLAEDSEN 145
           YGHNRQNC EPLTT R AE++++
Sbjct: 164 YGHNRQNCTEPLTTLRRAENAKD 186

BLAST of HG10017911 vs. NCBI nr
Match: XP_038904501.1 (uncharacterized protein LOC120090874 [Benincasa hispida])

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-52
Identity = 102/147 (69.39%), Postives = 119/147 (80.95%), Query Frame = 0

Query: 2   VHVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMT 61
           VHVRDNRLD IVNLHT+EC CKEF+++GI CSHAIVA +E NIPI  LCSRFYTV+SLMT
Sbjct: 78  VHVRDNRLDDIVNLHTKECTCKEFDSVGILCSHAIVATKERNIPIWSLCSRFYTVDSLMT 137

Query: 62  AYAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGN 121
           AYA+P+NPLGH+SEW +   YVE+ ILPP  +AQVGR RVRRIPSRGE  K +K +RCGN
Sbjct: 138 AYAEPINPLGHISEWKRAPRYVEKTILPPTFVAQVGRWRVRRIPSRGEFCKQMKCDRCGN 197

Query: 122 YGHNRQNCNEPLTTRRLAEDSENVCNV 149
           YGHN QNC++PLTT R  E  E V  +
Sbjct: 198 YGHNHQNCSKPLTTVRRTEMVETVTQI 224

BLAST of HG10017911 vs. ExPASy TrEMBL
Match: A0A5A7UML9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00820 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.8e-32
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 3   HVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMTA 62
           HV+D   + +VNL T+EC CKEF+A  +PCSHAI AAR+ NI +  LC+ +YT E L+ A
Sbjct: 667 HVKDLNKEEVVNLQTKECTCKEFQAEQLPCSHAIAAARDRNINVYSLCANYYTNECLLAA 726

Query: 63  YAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGNY 122
           YA+ + P+G+ S+W    DYV   +LPPK + +VGR + +RIPS GE PKL K  RC   
Sbjct: 727 YAEAIYPVGNQSDWKTSKDYVHMTVLPPKVVKRVGRPKKKRIPSVGEAPKLHKCGRCKQI 786

Query: 123 GHNRQNCNEPLT 135
           GHNR  C  P++
Sbjct: 787 GHNRLTCTNPIS 798

BLAST of HG10017911 vs. ExPASy TrEMBL
Match: A0A5A7TC30 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G00100 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.6e-32
Identity = 67/132 (50.76%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 3   HVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMTA 62
           HV+D   + +VNL T+EC CKEF+A  +PCSHAI AAR+ NI +  LC+ +YT E L+ A
Sbjct: 667 HVKDLDKEEVVNLQTKECTCKEFQAEQLPCSHAIAAARDRNINVYSLCANYYTNECLLAA 726

Query: 63  YAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGNY 122
           YA+ V P+G+ S+W    DYV   +LPPK + +VGR + +RIPS GE PKL K  RC   
Sbjct: 727 YAEAVYPVGNQSDWKTSEDYVHMTVLPPKVVKRVGRPKKKRIPSVGEAPKLHKCGRCKQI 786

Query: 123 GHNRQNCNEPLT 135
           GHNR  C  P++
Sbjct: 787 GHNRLTCTNPIS 798

BLAST of HG10017911 vs. ExPASy TrEMBL
Match: A0A2I7YUI4 (MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 9.9e-32
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 3   HVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMTA 62
           HV+D   + ++NLHTQEC CKEF+A  +PC+HAI  AR+ NI +  LC+ +YT E L+ A
Sbjct: 666 HVKDLDKEEVINLHTQECTCKEFQAEQLPCAHAIAVARDRNINVYSLCANYYTNECLLAA 725

Query: 63  YAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGNY 122
           Y++ V P+G+ SEW    +YV   +LPPK + +VGR + +RIPS GE PKL K  RC   
Sbjct: 726 YSEAVYPVGNQSEWKTTEEYVHMTVLPPKVVKRVGRPKKKRIPSVGEAPKLHKCGRCKET 785

Query: 123 GHNRQNCNEPLT 135
           GHNR  C  P++
Sbjct: 786 GHNRLTCTNPIS 797

BLAST of HG10017911 vs. ExPASy TrEMBL
Match: A0A5A7SYY7 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G001340 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 3   HVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMTA 62
           HV+D   + +VNL T+EC CKEF+A  +PCSHAI AAR+ NI +  LC+ +YT E L+ A
Sbjct: 667 HVKDLDKEEVVNLQTKECTCKEFQAEQLPCSHAIAAARDRNIIVYSLCANYYTNECLLAA 726

Query: 63  YAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGNY 122
           YA+ V P+G+ S+W    DY+   +LPPK + +VGR + +RIPS GE PKL K  RC   
Sbjct: 727 YAEAVYPVGNQSDWKTSEDYIHMTVLPPKVVKRVGRPKKKRIPSVGEAPKLHKCGRCKQI 786

Query: 123 GHNRQNCNEPLT 135
           GHNR  C  P++
Sbjct: 787 GHNRLTCTNPIS 798

BLAST of HG10017911 vs. ExPASy TrEMBL
Match: A0A5A7U821 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003550 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 3   HVRDNRLDGIVNLHTQECMCKEFEALGIPCSHAIVAAREHNIPIERLCSRFYTVESLMTA 62
           HV+D   + +VNL T+EC+CKEF+A  +PCSH I AAR+ NI +  LC+ +YT E L+ A
Sbjct: 119 HVKDLDKEEVVNLQTKECICKEFQAEQLPCSHVIAAARDRNINVYSLCANYYTNERLLAA 178

Query: 63  YAKPVNPLGHMSEWTKPADYVEQNILPPKRIAQVGRQRVRRIPSRGEHPKLIKNERCGNY 122
           YA+ V P+G+ S+W    DYV   +LPPK + +VGR + +RIPS GE PKL K  RC   
Sbjct: 179 YAEAVYPVGNQSDWKTSEDYVHMTVLPPKVVKRVGRPKKKRIPSVGEAPKLHKCGRCKQI 238

Query: 123 GHNRQNCNEPLT 135
           GHNR  C  P++
Sbjct: 239 GHNRLTCTNPVS 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038896508.17.0e-5672.73uncharacterized protein LOC120084759 [Benincasa hispida][more]
XP_038891632.11.2e-5573.43uncharacterized protein LOC120081024 [Benincasa hispida][more]
XP_038887233.16.5e-5471.33uncharacterized protein LOC120077423 [Benincasa hispida][more]
XP_038902455.11.6e-5269.23uncharacterized protein LOC120089103 [Benincasa hispida][more]
XP_038904501.12.1e-5269.39uncharacterized protein LOC120090874 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UML95.8e-3250.00MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4... [more]
A0A5A7TC307.6e-3250.76MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A2I7YUI49.9e-3249.24MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
A0A5A7SYY71.3e-3150.00MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4... [more]
A0A5A7U8211.7e-3150.00MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 18..45
e-value: 9.3E-8
score: 41.8
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 6..40
e-value: 9.6E-5
score: 22.0
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 11..43
score: 8.691347

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017911.1HG10017911.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding