HG10017903 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017903
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
LocationChr03: 25761782 .. 25762141 (-)
RNA-Seq ExpressionHG10017903
SyntenyHG10017903
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATACGAACAAATAAATAAGTATATTAGAAATACTATATTTGATGGTGATTCCATCTACGTCTGGAATATAGATGGAATGTCGGACTTCTTAATTGTTGAAGTCTTTAATGAAATGCTTATGGCAGCCAATGCCTATGAATCAAATCATCTTTCAAATCATCAAGCAATAAAATTAATTCTCAATGGCTTTAGTGGTGCACTAAAAATGTGGTGGGACAATTGTCTTAGCCCCAAAGCTAGAGAAAGTATAAAAACTCATAAGACGGAGGTAAATAAGAAAAGAACAATTAAAGTTGAAAATACAGTAACAATGGGAAAAGATGGAAAACCCATCGACGGAGCTTCTACCTCTTAA

mRNA sequence

ATGGGATACGAACAAATAAATAAGTATATTAGAAATACTATATTTGATGGTGATTCCATCTACGTCTGGAATATAGATGGAATGTCGGACTTCTTAATTGTTGAAGTCTTTAATGAAATGCTTATGGCAGCCAATGCCTATGAATCAAATCATCTTTCAAATCATCAAGCAATAAAATTAATTCTCAATGGCTTTAGTGGTGCACTAAAAATGTGGTGGGACAATTGTCTTAGCCCCAAAGCTAGAGAAAGTATAAAAACTCATAAGACGGAGGTAAATAAGAAAAGAACAATTAAAGTTGAAAATACAGTAACAATGGGAAAAGATGGAAAACCCATCGACGGAGCTTCTACCTCTTAA

Coding sequence (CDS)

ATGGGATACGAACAAATAAATAAGTATATTAGAAATACTATATTTGATGGTGATTCCATCTACGTCTGGAATATAGATGGAATGTCGGACTTCTTAATTGTTGAAGTCTTTAATGAAATGCTTATGGCAGCCAATGCCTATGAATCAAATCATCTTTCAAATCATCAAGCAATAAAATTAATTCTCAATGGCTTTAGTGGTGCACTAAAAATGTGGTGGGACAATTGTCTTAGCCCCAAAGCTAGAGAAAGTATAAAAACTCATAAGACGGAGGTAAATAAGAAAAGAACAATTAAAGTTGAAAATACAGTAACAATGGGAAAAGATGGAAAACCCATCGACGGAGCTTCTACCTCTTAA

Protein sequence

MGYEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVTMGKDGKPIDGASTS
Homology
BLAST of HG10017903 vs. NCBI nr
Match: XP_023520850.1 (uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 15  FDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYE-SNHLSNHQAIKLILNGFSGALKMWW 74
           +DG +IY WNIDG+SD+LI+ V NEM+MAA AY+   H S+HQ  ++++ GF+G LK WW
Sbjct: 300 YDGLAIYEWNIDGLSDYLIMNVVNEMMMAAGAYKLQGHKSDHQIAQVLVTGFTGQLKDWW 359

Query: 75  DNCLSPKARESIKTHKTEVNKKRTIKVENTVT 106
           D  L    R+ I  H       + IK E   T
Sbjct: 360 DKYLDETTRQQILNHYVIRPTTQIIKEEGPST 391

BLAST of HG10017903 vs. NCBI nr
Match: KAG2708372.1 (hypothetical protein I3760_05G189500 [Carya illinoinensis])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 8   KYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSG 67
           ++I  + F  D++Y WNIDG+S++ I+  F EM+M AN Y+++  S+HQ   +++ GF+G
Sbjct: 142 EHIVRSAFASDALYEWNIDGLSEYEILNHFQEMIMVANVYKASRRSDHQVAHVLVTGFTG 201

Query: 68  ALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVTMGKDGKPIDGA 117
            LK WWD+ L+ + R  I +        + IK E       DG+PI+ A
Sbjct: 202 QLKGWWDHYLTQEQRIRILSAYKHDENLQEIKTE-------DGQPIEDA 243

BLAST of HG10017903 vs. NCBI nr
Match: KAG6656908.1 (hypothetical protein CIPAW_04G053800 [Carya illinoinensis])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 8   KYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSG 67
           ++I  + F  D++Y WNIDG+S++ I+  F EM+M AN Y+++  S+HQ   +++ GF+G
Sbjct: 562 EHIVRSAFASDALYEWNIDGLSEYEILNHFQEMIMVANVYKASRRSDHQVAHVLVTGFTG 621

Query: 68  ALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVTMGKDGKPIDGA 117
            LK WWD+ L+ + R  I +        + IK E       DG+PI+ A
Sbjct: 622 QLKGWWDHYLTQEQRIRILSAYKHDENLQEIKTE-------DGQPIEDA 663

BLAST of HG10017903 vs. NCBI nr
Match: KAF5803680.1 (putative transcription factor interactor and regulator CCHC(Zn) family [Helianthus annuus])

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-11
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 0

Query: 15  FDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWD 74
           +DG S+Y WNI+G ++  I+ +  EM+MAANAY++N  +  Q + +I++GF+G LK WWD
Sbjct: 85  YDGTSLYEWNIEGQTEHQILNLLQEMIMAANAYKANGNNEAQILTMIVSGFTGILKGWWD 144

Query: 75  NCLSPKARESIKTHKTEVNKKRTIKVENTV 105
            CL+ + +     H  +  KK  IK EN V
Sbjct: 145 KCLTEEEK-----HIIQNAKKLIIKTENNV 169

BLAST of HG10017903 vs. NCBI nr
Match: XP_033139453.1 (uncharacterized protein LOC117131412 isoform X1 [Brassica rapa])

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-11
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 0

Query: 3   YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLIL 62
           +E+ +KY     + G+SIY WNIDG S++ ++ +F EM+MA  AY+    ++ Q+  L++
Sbjct: 619 FEEHHKYTSKE-YSGESIYEWNIDGRSEYEMLNLFQEMVMATMAYKGRGNNDQQSCILLV 678

Query: 63  NGFSGALKMWWDNCLSPKARESIKTH------KTEVNKKRTIKVENTV 105
           +GF+GAL+ WWDN L    +ESI  H      + E      I+V+N V
Sbjct: 679 SGFTGALRYWWDNSLDAITQESIINHVEIKQQEDEEGFMNDIEVQNAV 725

BLAST of HG10017903 vs. ExPASy TrEMBL
Match: A0A1J3J6U2 (Movement protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR7902_c22_g1_i1_g.23994 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.4e-11
Identity = 37/86 (43.02%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 3   YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLIL 62
           +E+ +KY  N ++ G+ IY WNIDG S++ I+++  EM MAA A+++   ++ QA  +I+
Sbjct: 625 FEEHHKYTPN-VYTGEGIYEWNIDGRSEYEIMKLCQEMGMAAMAFKARGNTDKQACIMIV 684

Query: 63  NGFSGALKMWWDNCLSPKARESIKTH 89
            GF+GAL+ WWDN LS   ++SI  H
Sbjct: 685 AGFTGALRYWWDNSLSDAIQDSIINH 709

BLAST of HG10017903 vs. ExPASy TrEMBL
Match: A0A6J1EZI3 (uncharacterized protein LOC111440658 OS=Cucurbita moschata OX=3662 GN=LOC111440658 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.8e-11
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 21  YVWNIDGMSDFLIVEVFNEMLMAANAYE-SNHLSNHQAIKLILNGFSGALKMWWDNCLSP 80
           Y WNIDG+SD+LI+ V NEM+MAA AY+   H S+HQ  ++++ GF+G LK WWD  L  
Sbjct: 12  YEWNIDGLSDYLIMNVVNEMMMAAGAYKLQRHKSDHQIAQVLVTGFTGQLKDWWDKYLDE 71

Query: 81  KARESIKTHKTEVNKKRTIKVENTVT 106
             R+ I  H       + IK E   T
Sbjct: 72  TTRQQILNHYVIRPTTQIIKEEGPST 97

BLAST of HG10017903 vs. ExPASy TrEMBL
Match: A5ATW3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_000856 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.9e-11
Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 3   YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLIL 62
           YE+ ++ +++  +DGD IY WNIDG+SD  ++ +  EM+MA+  Y+    S+H     ++
Sbjct: 47  YEKRSQIVQSK-YDGDDIYXWNIDGVSDHQVLNILQEMIMASXTYKPRGNSDHMICVHLM 106

Query: 63  NGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTI 99
            GF+G LK WWDN L+ +    I+T   E   + ++
Sbjct: 107 AGFTGQLKEWWDNALTEEGTTFIQTSLNESGNQNSV 141

BLAST of HG10017903 vs. ExPASy TrEMBL
Match: A0A251VET5 (Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidase domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0042331 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 15  FDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWD 74
           +DG S+Y WNI+G ++  I+ +  EM+MAANAY++N  +  Q + +I++GF+G LK WWD
Sbjct: 283 YDGTSLYEWNIEGQTEHQILNLLQEMIMAANAYKANGNNEAQILTMIVSGFTGILKGWWD 342

Query: 75  NCLSPKARESIKTHKTEVNKKRTIKVENTV 105
             L+ + +     H  +  KK  IK EN V
Sbjct: 343 KYLTEEEK-----HIIQNAKKLIIKTENNV 367

BLAST of HG10017903 vs. ExPASy TrEMBL
Match: V4KS84 (Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009827mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-10
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 3   YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNH-LSNHQAIKLI 62
           +E+ +KY  N ++ G+ IY WNIDG S++ I+ V  EM MA  A++++  +++ +A  L+
Sbjct: 97  FEEHHKY-SNNMYSGNGIYEWNIDGKSEYEIMNVLQEMGMATAAFKTDKTITDKEACVLL 156

Query: 63  LNGFSGALKMWWDNCLSPKARESIKTHKTEV 93
           + GFSG+LK WWDN L    + SI  H  ++
Sbjct: 157 VAGFSGSLKYWWDNALDTNQQNSIINHVEKI 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023520850.11.7e-1245.65uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo][more]
KAG2708372.11.4e-1136.70hypothetical protein I3760_05G189500 [Carya illinoinensis][more]
KAG6656908.11.4e-1136.70hypothetical protein CIPAW_04G053800 [Carya illinoinensis][more]
KAF5803680.11.9e-1142.22putative transcription factor interactor and regulator CCHC(Zn) family [Helianth... [more]
XP_033139453.15.4e-1137.96uncharacterized protein LOC117131412 isoform X1 [Brassica rapa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1J3J6U23.4e-1143.02Movement protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR7902_c22_g... [more]
A0A6J1EZI35.8e-1145.35uncharacterized protein LOC111440658 OS=Cucurbita moschata OX=3662 GN=LOC1114406... [more]
A5ATW39.9e-1135.42Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_000856 PE=4 SV=1[more]
A0A251VET51.7e-1041.11Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidas... [more]
V4KS842.2e-1039.56Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v100... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33054FAMILY NOT NAMEDcoord: 16..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017903.1HG10017903.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0003824 catalytic activity