HG10017844 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017844
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L22-2
Location	Chr03: 24145722 .. 24146051 (-)
RNA-Seq Expression	HG10017844
Synteny	HG10017844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTGTGGAGCAGCCGCATCCGGTGGCCCGAAGGGGAAGAAGGGTGTGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATTGCCTCGTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGTAAAGTTGGGGCACTTGGTGACTCGGTTACTGTCACTCGGGACAAGAACAAGATCACCGTCAACTCCGATAGCAATTTCTCCAAGAGGTATCTCAAATACTTGACTAAGAAGTATTTGAAGAAACACAACGTTAGAGATTGGCTCTGGGTTATTGCTTCGTACAAGGACCGCAAACGTCTATGA

mRNA sequence

ATGAGCTGTGGAGCAGCCGCATCCGGTGGCCCGAAGGGGAAGAAGGGTGTGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATTGCCTCGTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGTAAAGTTGGGGCACTTGGTGACTCGGTTACTGTCACTCGGGACAAGAACAAGATCACCGTCAACTCCGATAGCAATTTCTCCAAGAGGTATCTCAAATACTTGACTAAGAAGTATTTGAAGAAACACAACGTTAGAGATTGGCTCTGGGTTATTGCTTCGTACAAGGACCGCAAACGTCTATGA

Coding sequence (CDS)

ATGAGCTGTGGAGCAGCCGCATCCGGTGGCCCGAAGGGGAAGAAGGGTGTGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATTGCCTCGTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGTAAAGTTGGGGCACTTGGTGACTCGGTTACTGTCACTCGGGACAAGAACAAGATCACCGTCAACTCCGATAGCAATTTCTCCAAGAGGTATCTCAAATACTTGACTAAGAAGTATTTGAAGAAACACAACGTTAGAGATTGGCTCTGGGTTATTGCTTCGTACAAGGACCGCAAACGTCTATGA

Protein sequence

MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDRKRL

Homology

[Close]

BLAST of HG10017844 vs. NCBI nr
Match: XP_004136027.1 (60S ribosomal protein L22-2 [Cucumis sativus] >XP_008451565.1 PREDICTED: 60S ribosomal protein L22-2 [Cucumis melo] >XP_022155135.1 60S ribosomal protein L22-2 [Momordica charantia] >XP_038896853.1 60S ribosomal protein L22-2-like [Benincasa hispida] >KAA0067992.1 60S ribosomal protein L22-2-like [Cucumis melo var. makuwa] >KGN44943.1 hypothetical protein Csa_015937 [Cucumis sativus] >TYK18135.1 60S ribosomal protein L22-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. NCBI nr
Match: XP_022991268.1 (60S ribosomal protein L22-2-like [Cucurbita maxima])

HSP 1 Score: 191.4 bits (485), Expect = 4.0e-45
Identity = 101/107 (94.39%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. NCBI nr
Match: XP_023548993.1 (60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo] >KAG6575823.1 60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.4 bits (485), Expect = 4.0e-45
Identity = 101/107 (94.39%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. NCBI nr
Match: XP_022960081.1 (60S ribosomal protein L22-2-like [Cucurbita moschata] >XP_023004692.1 60S ribosomal protein L22-2-like [Cucurbita maxima] >KAG6593201.1 60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.3 bits (482), Expect = 8.9e-45
Identity = 101/107 (94.39%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASGGPKG KKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. NCBI nr
Match: XP_022953729.1 (60S ribosomal protein L22-2-like [Cucurbita moschata])

HSP 1 Score: 188.0 bits (476), Expect = 4.4e-44
Identity = 100/107 (93.46%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASG PKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VT
Sbjct: 1   MSRGAAASGCPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. ExPASy Swiss-Prot
Match: Q9M9W1 (60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-37
Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTV 60
           MS G AA    K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSVT+
Sbjct: 1   MSRGGAAVAKGK-KKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTI 60

Query: 61  TRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VIA+ KDR
Sbjct: 61  TREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDR 105

[Close]

BLAST of HG10017844 vs. ExPASy Swiss-Prot
Match: Q9FE58 (60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.2e-37
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTV 60
           MS G AA+   K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSV++
Sbjct: 1   MSRGNAAAAKGK-KKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSI 60

Query: 61  TRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VIA+ KDR
Sbjct: 61  TREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDR 105

[Close]

BLAST of HG10017844 vs. ExPASy Swiss-Prot
Match: Q9SRX7 (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.6e-34
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 4   GAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRD 63
           GA +SG    KKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GK GALG+SV++TR 
Sbjct: 5   GAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRY 64

Query: 64  KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
             KI VN++SNFSKRYLKYLTKKYLKK+N+RDWL VIAS KD+
Sbjct: 65  NGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDK 107

[Close]

BLAST of HG10017844 vs. ExPASy Swiss-Prot
Match: Q98TF8 (60S ribosomal protein L22 OS=Gallus gallus OX=9031 GN=RPL22 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-26
Identity = 64/105 (60.95%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 6   AASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDS-VTVTRDK 65
           AA GG K K+ + F +DC  PVED IMD A+ E+FL ERIKV GK G LG   VT+ R K
Sbjct: 8   AAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 67

Query: 66  NKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDRKRL 110
           +KITV S+  FSKRYLKYLTKKYLKK+N+RDWL V+A+ K+   L
Sbjct: 68  SKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYEL 112

[Close]

BLAST of HG10017844 vs. ExPASy Swiss-Prot
Match: P47198 (60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-26
Identity = 63/104 (60.58%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 7   ASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDS-VTVTRDKN 66
           A GG K K+ + F +DC  PVED IMD A+ E+FL ERIKV GK G LG   VT+ R K+
Sbjct: 9   AKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKS 68

Query: 67  KITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDRKRL 110
           KITV S+  FSKRYLKYLTKKYLKK+N+RDWL V+A+ K+   L
Sbjct: 69  KITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYEL 112

[Close]

BLAST of HG10017844 vs. ExPASy TrEMBL
Match: A0A5D3D2W6 (60S ribosomal protein L22-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00650 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.7e-46
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. ExPASy TrEMBL
Match: A0A0A0K637 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G397560 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.7e-46
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. ExPASy TrEMBL
Match: A0A6J1DLK6 (60S ribosomal protein L22-2 OS=Momordica charantia OX=3673 GN=LOC111022271 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.7e-46
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. ExPASy TrEMBL
Match: A0A1S3BRQ9 (60S ribosomal protein L22-2 OS=Cucumis melo OX=3656 GN=LOC103492808 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.7e-46
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. ExPASy TrEMBL
Match: A0A6J1JVR1 (60S ribosomal protein L22-2-like OS=Cucurbita maxima OX=3661 GN=LOC111487969 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 101/107 (94.39%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVT 60
           MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL VIAS KDR
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR 107

[Close]

BLAST of HG10017844 vs. TAIR 10
Match: AT3G05560.1 (Ribosomal L22e protein family )

HSP 1 Score: 156.4 bits (394), Expect = 1.3e-38
Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTV 60
           MS G AA    K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSVT+
Sbjct: 1   MSRGGAAVAKGK-KKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTI 60

Query: 61  TRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VIA+ KDR
Sbjct: 61  TREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDR 105

[Close]

BLAST of HG10017844 vs. TAIR 10
Match: AT3G05560.2 (Ribosomal L22e protein family )

HSP 1 Score: 156.4 bits (394), Expect = 1.3e-38
Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTV 60
           MS G AA    K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSVT+
Sbjct: 1   MSRGGAAVAKGK-KKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTI 60

Query: 61  TRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VIA+ KDR
Sbjct: 61  TREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDR 105

[Close]

BLAST of HG10017844 vs. TAIR 10
Match: AT3G05560.3 (Ribosomal L22e protein family )

HSP 1 Score: 156.4 bits (394), Expect = 1.3e-38
Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTV 60
           MS G AA    K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSVT+
Sbjct: 1   MSRGGAAVAKGK-KKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTI 60

Query: 61  TRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VIA+ KDR
Sbjct: 61  TREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDR 105

[Close]

BLAST of HG10017844 vs. TAIR 10
Match: AT5G27770.1 (Ribosomal L22e protein family )

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-38
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTV 60
           MS G AA+   K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSV++
Sbjct: 1   MSRGNAAAAKGK-KKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSI 60

Query: 61  TRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
           TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VIA+ KDR
Sbjct: 61  TREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDR 105

[Close]

BLAST of HG10017844 vs. TAIR 10
Match: AT1G02830.1 (Ribosomal L22e protein family )

HSP 1 Score: 144.1 bits (362), Expect = 6.8e-35
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 4   GAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRD 63
           GA +SG    KKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GK GALG+SV++TR 
Sbjct: 5   GAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRY 64

Query: 64  KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDR 107
             KI VN++SNFSKRYLKYLTKKYLKK+N+RDWL VIAS KD+
Sbjct: 65  NGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDK 107

The following BLAST results are available for this feature:

BLAST of HG10017844 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136027.1	1.8e-45	95.33	60S ribosomal protein L22-2 [Cucumis sativus] >XP_008451565.1 PREDICTED: 60S rib...	[more]
XP_022991268.1	4.0e-45	94.39	60S ribosomal protein L22-2-like [Cucurbita maxima]	[more]
XP_023548993.1	4.0e-45	94.39	60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo] >KAG6575823.1 60S ...	[more]
XP_022960081.1	8.9e-45	94.39	60S ribosomal protein L22-2-like [Cucurbita moschata] >XP_023004692.1 60S riboso...	[more]
XP_022953729.1	4.4e-44	93.46	60S ribosomal protein L22-2-like [Cucurbita moschata]	[more]

BLAST of HG10017844 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9W1	1.9e-37	77.36	60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1	[more]
Q9FE58	4.2e-37	76.42	60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1	[more]
Q9SRX7	9.6e-34	70.87	Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A P...	[more]
Q98TF8	1.9e-26	60.95	60S ribosomal protein L22 OS=Gallus gallus OX=9031 GN=RPL22 PE=2 SV=1	[more]
P47198	2.5e-26	60.58	60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2	[more]

BLAST of HG10017844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2W6	8.7e-46	95.33	60S ribosomal protein L22-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0K637	8.7e-46	95.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G397560 PE=3 SV=1	[more]
A0A6J1DLK6	8.7e-46	95.33	60S ribosomal protein L22-2 OS=Momordica charantia OX=3673 GN=LOC111022271 PE=3 ...	[more]
A0A1S3BRQ9	8.7e-46	95.33	60S ribosomal protein L22-2 OS=Cucumis melo OX=3656 GN=LOC103492808 PE=3 SV=1	[more]
A0A6J1JVR1	1.9e-45	94.39	60S ribosomal protein L22-2-like OS=Cucurbita maxima OX=3661 GN=LOC111487969 PE=...	[more]

BLAST of HG10017844 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05560.1	1.3e-38	77.36	Ribosomal L22e protein family	[more]
AT3G05560.2	1.3e-38	77.36	Ribosomal L22e protein family	[more]
AT3G05560.3	1.3e-38	77.36	Ribosomal L22e protein family	[more]
AT5G27770.1	3.0e-38	76.42	Ribosomal L22e protein family	[more]
AT1G02830.1	6.8e-35	70.87	Ribosomal L22e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002671	Ribosomal protein L22e	PFAM	PF01776	Ribosomal_L22e	coord: 15..105 e-value: 1.1E-37 score: 128.7
IPR002671	Ribosomal protein L22e	PANTHER	PTHR10064	60S RIBOSOMAL PROTEIN L22	coord: 1..107
IPR038526	Ribosomal protein L22e superfamily	GENE3D	3.30.1360.210		coord: 6..109 e-value: 2.3E-45 score: 155.4
None	No IPR available	PANTHER	PTHR10064:SF16	60S RIBOSOMAL PROTEIN L22-2	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017844.1	HG10017844.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome