HG10017803 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017803
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 22788639 .. 22788926 (+)
RNA-Seq Expression	HG10017803
Synteny	HG10017803

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATTGTTTCGCACCGGTTGTGGCCCCTAACTTTGATGATTGTGAAGGAGGTTGGAATCATATTTCGAATGTTGAGAGCAATTGGTATGTGCAAGGGATGGGAAAGTTTGCAGTAGCAGAGTATATACATCATAATCCAGGAGCAGATTATCAGAAAAATTTCACTTCTTCTGTGACAAGTGCTTCTATTTGTTCACGAGTTGTGCCTAATTGTGGAGAAAAATATATACTATACATATCAGTTATCCCAAATCGGAGAGAAAAATATCAACTAGTCATATAA

mRNA sequence

ATGAGTGATTGTTTCGCACCGGTTGTGGCCCCTAACTTTGATGATTGTGAAGGAGGTTGGAATCATATTTCGAATGTTGAGAGCAATTGGTATGTGCAAGGGATGGGAAAGTTTGCAGTAGCAGAGTATATACATCATAATCCAGGAGCAGATTATCAGAAAAATTTCACTTCTTCTGTGACAAGTGCTTCTATTTGTTCACGAGTTGTGCCTAATTGTGGAGAAAAATATATACTATACATATCAGTTATCCCAAATCGGAGAGAAAAATATCAACTAGTCATATAA

Coding sequence (CDS)

ATGAGTGATTGTTTCGCACCGGTTGTGGCCCCTAACTTTGATGATTGTGAAGGAGGTTGGAATCATATTTCGAATGTTGAGAGCAATTGGTATGTGCAAGGGATGGGAAAGTTTGCAGTAGCAGAGTATATACATCATAATCCAGGAGCAGATTATCAGAAAAATTTCACTTCTTCTGTGACAAGTGCTTCTATTTGTTCACGAGTTGTGCCTAATTGTGGAGAAAAATATATACTATACATATCAGTTATCCCAAATCGGAGAGAAAAATATCAACTAGTCATATAA

Protein sequence

MSDCFAPVVAPNFDDCEGGWNHISNVESNWYVQGMGKFAVAEYIHHNPGADYQKNFTSSVTSASICSRVVPNCGEKYILYISVIPNRREKYQLVI

Homology

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BLAST of HG10017803 vs. NCBI nr
Match: KAE8649343.1 (hypothetical protein Csa_014384 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 38/83 (45.78%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 1  MSDCFAPVVAPNFDDCEGGWNHISNVESNWYVQGMGKFAVAEYIHHNPGADYQKNFTSSV 60
          MSD    VV  N +DC+     ISNVE N Y+Q MG+FAV EY H+N G    K    SV
Sbjct: 1  MSDFVEMVVPNNQEDCK----QISNVEYNSYLQAMGRFAVEEYTHYNKGI---KRKFISV 60

Query: 61 TSASICSRVVPNCGEKYILYISV 84
            A +CS  V    EKY L + V
Sbjct: 61 GFAVVCSVSVGE--EKYHLLVKV 74

The following BLAST results are available for this feature:

BLAST of HG10017803 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649343.1	2.3e-04	45.78	hypothetical protein Csa_014384 [Cucumis sativus]	[more]

BLAST of HG10017803 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017803 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017803 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 15..95 e-value: 2.0E-5 score: 26.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017803.1	HG10017803.1	mRNA