HG10017753 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017753
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Membrane-associated 30 kDa protein
Location	Chr03: 21143421 .. 21143651 (-)
RNA-Seq Expression	HG10017753
Synteny	HG10017753

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTCAAAAGATCAGTACCCTTTTGATCGTTTGTGTTGTATTTAGTATTGTCTTGAGTCATATAAATGTAGCTGATGCAGCACAGGTGCTCCCAGAGACTTCACGTGATCATCGTGTTGATTATGTTGATCCATATTCGATAGTTCATCACAAACCAGAGGAAACTGTCTCATGTTGTCTTGGAAAATCTGGACCGAGTCCTCGTGGCCCAGGTCACCAACACTAA

mRNA sequence

ATGAAGTTTCAAAAGATCAGTACCCTTTTGATCGTTTGTGTTGTATTTAGTATTGTCTTGAGTCATATAAATGTAGCTGATGCAGCACAGGTGCTCCCAGAGACTTCACGTGATCATCGTGTTGATTATGTTGATCCATATTCGATAGTTCATCACAAACCAGAGGAAACTGTCTCATGTTGTCTTGGAAAATCTGGACCGAGTCCTCGTGGCCCAGGTCACCAACACTAA

Coding sequence (CDS)

ATGAAGTTTCAAAAGATCAGTACCCTTTTGATCGTTTGTGTTGTATTTAGTATTGTCTTGAGTCATATAAATGTAGCTGATGCAGCACAGGTGCTCCCAGAGACTTCACGTGATCATCGTGTTGATTATGTTGATCCATATTCGATAGTTCATCACAAACCAGAGGAAACTGTCTCATGTTGTCTTGGAAAATCTGGACCGAGTCCTCGTGGCCCAGGTCACCAACACTAA

Protein sequence

MKFQKISTLLIVCVVFSIVLSHINVADAAQVLPETSRDHRVDYVDPYSIVHHKPEETVSCCLGKSGPSPRGPGHQH

Homology

[Close]

BLAST of HG10017753 vs. NCBI nr
Match: KAG7018440.1 (hypothetical protein SDJN02_20308, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 4.2e-17
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLPETSRDHRVDYVDPYSIVHHKPEETVSC 60
          MKFQKI +  IVCVVF I+LS I+  DAA+VL ETS +H VDY+DPYSIV+ K +ETVSC
Sbjct: 11 MKFQKIRSFFIVCVVFGIILSQISTIDAARVLSETS-NHGVDYIDPYSIVYQKAKETVSC 70

Query: 61 CLGK--SGPSPRGPGH 75
           LGK  SGPSP GPGH
Sbjct: 71 WLGKLSSGPSPSGPGH 85

[Close]

BLAST of HG10017753 vs. NCBI nr
Match: KGN53025.1 (hypothetical protein Csa_015299 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVL----PETSRDHRVDY-VDPYSIVHHKPE 60
          MKFQKI+TLLIVCV+  +VLS INVADAA++L    P    DH VDY +DPYSIV+ K +
Sbjct: 2  MKFQKITTLLIVCVLVGVVLSQINVADAARILLSETPRDDHDHGVDYHIDPYSIVYQKAK 61

Query: 61 ETVSCCLGK--SGPSPRGPGH 75
          E++SC LGK  SGPSP GPGH
Sbjct: 62 ESISCWLGKLSSGPSPSGPGH 82

[Close]

BLAST of HG10017753 vs. NCBI nr
Match: KAA0043548.1 (hypothetical protein E6C27_scaffold335G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLPETSR-DHRVDYVDPYSIVHHKPEETVS 60
          MKFQKI+ LLI+CVVF IV SHI   DAA++L ET R DH VD +D YSI HHK +++V 
Sbjct: 1  MKFQKIAALLIICVVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CCLG--KSGPSPRGPGH 75
          C L   +SGPSP+GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of HG10017753 vs. NCBI nr
Match: TYK02483.1 (hypothetical protein E5676_scaffold784G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.7e-15
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLPETSR-DHRVDYVDPYSIVHHKPEETVS 60
          MKFQKI+ LLI+C+VF IV SHI   DAA++L ET R DH VD +D YSI HHK +++V 
Sbjct: 1  MKFQKIAALLIICLVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CCLG--KSGPSPRGPGH 75
          C L   +SGPSP+GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of HG10017753 vs. NCBI nr
Match: KAA0043550.1 (hypothetical protein E6C27_scaffold335G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 9.7e-14
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINV--ADAAQVLPETSR-DHRVDYVDPYSIVHHKPEET 60
          MKFQKI+ LLIVCVVF IV SHI++   DAA++L ET R DH VD VDPYSI HHK +++
Sbjct: 1  MKFQKIAALLIVCVVFGIVFSHIDIGTVDAARMLFETLRDDHDVDCVDPYSIDHHKAKDS 60

Query: 61 VSCCLGK--SGPSPRGPGH 75
          V C L    SGPS +GPGH
Sbjct: 61 VKCWLENLGSGPSLKGPGH 79

[Close]

BLAST of HG10017753 vs. ExPASy TrEMBL
Match: A0A0A0KTV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011720 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.7e-17
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVL----PETSRDHRVDY-VDPYSIVHHKPE 60
          MKFQKI+TLLIVCV+  +VLS INVADAA++L    P    DH VDY +DPYSIV+ K +
Sbjct: 2  MKFQKITTLLIVCVLVGVVLSQINVADAARILLSETPRDDHDHGVDYHIDPYSIVYQKAK 61

Query: 61 ETVSCCLGK--SGPSPRGPGH 75
          E++SC LGK  SGPSP GPGH
Sbjct: 62 ESISCWLGKLSSGPSPSGPGH 82

[Close]

BLAST of HG10017753 vs. ExPASy TrEMBL
Match: A0A5A7TL44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00460 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLPETSR-DHRVDYVDPYSIVHHKPEETVS 60
          MKFQKI+ LLI+CVVF IV SHI   DAA++L ET R DH VD +D YSI HHK +++V 
Sbjct: 1  MKFQKIAALLIICVVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CCLG--KSGPSPRGPGH 75
          C L   +SGPSP+GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of HG10017753 vs. ExPASy TrEMBL
Match: A0A5D3BS33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00050 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLPETSR-DHRVDYVDPYSIVHHKPEETVS 60
          MKFQKI+ LLI+C+VF IV SHI   DAA++L ET R DH VD +D YSI HHK +++V 
Sbjct: 1  MKFQKIAALLIICLVFGIVFSHIGTVDAARMLSETLRDDHDVDCIDSYSIDHHKAKDSVK 60

Query: 61 CCLG--KSGPSPRGPGH 75
          C L   +SGPSP+GPGH
Sbjct: 61 CWLENLESGPSPKGPGH 77

[Close]

BLAST of HG10017753 vs. ExPASy TrEMBL
Match: A0A5A7TJV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00490 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.7e-14
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINV--ADAAQVLPETSR-DHRVDYVDPYSIVHHKPEET 60
          MKFQKI+ LLIVCVVF IV SHI++   DAA++L ET R DH VD VDPYSI HHK +++
Sbjct: 1  MKFQKIAALLIVCVVFGIVFSHIDIGTVDAARMLFETLRDDHDVDCVDPYSIDHHKAKDS 60

Query: 61 VSCCLGK--SGPSPRGPGH 75
          V C L    SGPS +GPGH
Sbjct: 61 VKCWLENLGSGPSLKGPGH 79

[Close]

BLAST of HG10017753 vs. ExPASy TrEMBL
Match: A0A5D2NSU7 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G169900v1 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-05
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MKFQKISTLLIVCVVFSIVLSHINVADAAQVLPETSRDHRVDYVDPYSIVHHKPEETVSC 60
          M  +K+STLL++CV+   VLS ++V +AA+VL E   +  V++++ YS V+HK   T+S 
Sbjct: 1  MNSRKVSTLLMICVISMAVLSDVSV-EAARVLREDLGN--VNHMETYSSVYHKARSTMSY 60

Query: 61 CLGK--SGPSPRGPGH 75
           L +  SGPSPRGPGH
Sbjct: 61 WLQRLASGPSPRGPGH 73

The following BLAST results are available for this feature:

BLAST of HG10017753 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018440.1	4.2e-17	68.42	hypothetical protein SDJN02_20308, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN53025.1	1.6e-16	64.20	hypothetical protein Csa_015299 [Cucumis sativus]	[more]
KAA0043548.1	3.0e-15	62.34	hypothetical protein E6C27_scaffold335G00460 [Cucumis melo var. makuwa]	[more]
TYK02483.1	6.7e-15	61.04	hypothetical protein E5676_scaffold784G00050 [Cucumis melo var. makuwa]	[more]
KAA0043550.1	9.7e-14	63.29	hypothetical protein E6C27_scaffold335G00490 [Cucumis melo var. makuwa]	[more]

BLAST of HG10017753 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017753 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTV4	7.7e-17	64.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011720 PE=4 SV=1	[more]
A0A5A7TL44	1.5e-15	62.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BS33	3.3e-15	61.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJV8	4.7e-14	63.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D2NSU7	1.0e-05	47.37	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G169900v1 P...	[more]

BLAST of HG10017753 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040273	PAMP-induced secreted peptide 1	PANTHER	PTHR37245	PAMP-INDUCED SECRETED PEPTIDE 1	coord: 1..74
None	No IPR available	PANTHER	PTHR37245:SF4	PAMP-INDUCED SECRETED PEPTIDE 1	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017753.1	HG10017753.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response