HG10017751 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017751
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
LocationChr03: 21091525 .. 21091899 (+)
RNA-Seq ExpressionHG10017751
SyntenyHG10017751
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTATGGCAGCCAGTGTCTATGAATCAAATGATCTTTCAGATCATCAAGCAGCAAAATTAATTCTCAATGGCTTCACTAGTACACTTAAAATGTGGTGGGACAATTGTCTTAGCCCAGAAGCTAGAGAACATATAAAAACTCATAAGACGAAGGTAAAGAAGAAAAGAACAATTAAAGTTGAAAATACAGTAACAATTGAAAAAGATGGAAAACCCATCGATGGAGCTTCTACCTCTAAAGAAGTAGTAGAAGGAGAAGAAATAGAAGATGTTGTGGCAACCTTAGTCGACAATATAGCCTATTATTTCACTTCGACAAATGACTGTGGTGCTGAAAATCGAAGAAAAATTTTAAAAAATTTGCAATGCTAA

mRNA sequence

ATGCTTATGGCAGCCAGTGTCTATGAATCAAATGATCTTTCAGATCATCAAGCAGCAAAATTAATTCTCAATGGCTTCACTAGTACACTTAAAATGTGGTGGGACAATTGTCTTAGCCCAGAAGCTAGAGAACATATAAAAACTCATAAGACGAAGGTAAAGAAGAAAAGAACAATTAAAGTTGAAAATACAGTAACAATTGAAAAAGATGGAAAACCCATCGATGGAGCTTCTACCTCTAAAGAAGTAGTAGAAGGAGAAGAAATAGAAGATGTTGTGGCAACCTTAGTCGACAATATAGCCTATTATTTCACTTCGACAAATGACTGTGGTGCTGAAAATCGAAGAAAAATTTTAAAAAATTTGCAATGCTAA

Coding sequence (CDS)

ATGCTTATGGCAGCCAGTGTCTATGAATCAAATGATCTTTCAGATCATCAAGCAGCAAAATTAATTCTCAATGGCTTCACTAGTACACTTAAAATGTGGTGGGACAATTGTCTTAGCCCAGAAGCTAGAGAACATATAAAAACTCATAAGACGAAGGTAAAGAAGAAAAGAACAATTAAAGTTGAAAATACAGTAACAATTGAAAAAGATGGAAAACCCATCGATGGAGCTTCTACCTCTAAAGAAGTAGTAGAAGGAGAAGAAATAGAAGATGTTGTGGCAACCTTAGTCGACAATATAGCCTATTATTTCACTTCGACAAATGACTGTGGTGCTGAAAATCGAAGAAAAATTTTAAAAAATTTGCAATGCTAA

Protein sequence

MLMAASVYESNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTIKVENTVTIEKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKILKNLQC
Homology
BLAST of HG10017751 vs. NCBI nr
Match: KAA0056258.1 (hypothetical protein E6C27_scaffold226G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 0

Query: 8   YESNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTIKVENTVTI 67
           YESN  S+ +AA L++NGF+ +LK+WWD+ LS E +E IK  KTKV  +R IKVE     
Sbjct: 267 YESNGHSNREAAMLLINGFSGSLKLWWDHALSTERKEAIKRQKTKV--RRIIKVE----- 326

Query: 68  EKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKILKNLQC 125
                  +GAST++EV   EEIE+VV TL+  I  +F   +D   EN+RKI+KNL+C
Sbjct: 327 -------EGASTTQEV--EEEIENVVETLLYAINLHFGLGSDTDVENQRKIIKNLKC 367

BLAST of HG10017751 vs. NCBI nr
Match: KAG5631284.1 (hypothetical protein H5410_003001 [Solanum commersonii])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-06
Identity = 42/124 (33.87%), Postives = 60/124 (48.39%), Query Frame = 0

Query: 1   MLMAASVYESNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTIK 60
           M M+ + Y+  +LSD QAA LI   FT TLK WWDN L+ + R+               K
Sbjct: 39  MGMSITTYKIKNLSDKQAATLITTEFTGTLKNWWDNYLTEDNRK---------------K 98

Query: 61  VENTVTIEKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKILK 120
           V N  TI     PI    +  + +E + +ED  A+L+ +IA +F        +   +IL 
Sbjct: 99  VVNDTTI----IPIIKTESRGQTIENQILEDATASLIYSIAKHFIGEPQFFQDRSLEILS 143

Query: 121 NLQC 125
           NL C
Sbjct: 159 NLSC 143

BLAST of HG10017751 vs. NCBI nr
Match: XP_023522280.1 (uncharacterized protein LOC111786173, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-06
Identity = 43/125 (34.40%), Postives = 61/125 (48.80%), Query Frame = 0

Query: 1   MLMAASVYE-SNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTI 60
           M+MAA  Y+     SDHQ A++++ GFT  LK WWD  L    R+ I +H          
Sbjct: 7   MMMAAGAYKLQGHKSDHQIAQVLVTGFTGQLKDWWDKYLDEATRQQILSHYV-------- 66

Query: 61  KVENTVTIEKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKIL 120
            +  T  I K+    +G ST  E V+ E +ED V TL+  +  +F        E   +IL
Sbjct: 67  -IRPTTQIIKE----EGPSTRTE-VQHERVEDAVNTLIYTLIEFFVGNPLKYQERSAEIL 117

Query: 121 KNLQC 125
            NL+C
Sbjct: 127 MNLKC 117

BLAST of HG10017751 vs. NCBI nr
Match: XP_023521035.1 (uncharacterized protein LOC111784623 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 43/125 (34.40%), Postives = 61/125 (48.80%), Query Frame = 0

Query: 1   MLMAASVYE-SNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTI 60
           M+MAA  Y+     SDHQ A++++ GFT  LK WWD  L    R+ I +H          
Sbjct: 7   MMMAAGAYKLQGHKSDHQIAQVLVTGFTGQLKDWWDKYLDEATRQQILSHYV-------- 66

Query: 61  KVENTVTIEKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKIL 120
            +  T  I K+    +G ST  E V+ E +ED V TL+  +  +F        E   +IL
Sbjct: 67  -IRPTTQIIKE----EGPSTRTE-VQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEIL 117

Query: 121 KNLQC 125
            NL+C
Sbjct: 127 MNLKC 117

BLAST of HG10017751 vs. NCBI nr
Match: XP_028107153.1 (uncharacterized protein LOC114306167 [Camellia sinensis])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 35/125 (28.00%), Postives = 62/125 (49.60%), Query Frame = 0

Query: 1   MLMAASVYESNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTIK 60
           M+M +++ + N+  DH+  + +LNGFT  LK WWDN ++                  T +
Sbjct: 41  MIMYSTICKQNENDDHEITRFLLNGFTGILKAWWDNIIT-----------------NTQQ 100

Query: 61  VENTVTIEKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENR-RKIL 120
           +E     ++   P+ G   S+        +D V T ++ I +YF   +  G E+R R++L
Sbjct: 101 IEILTAFKRITDPLTGTVQSE--------QDAVYTFINTILHYFVGASPDGLEDRSRELL 140

Query: 121 KNLQC 125
           +NL+C
Sbjct: 161 QNLRC 140

BLAST of HG10017751 vs. ExPASy TrEMBL
Match: A0A5A7UMD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00260 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 0

Query: 8   YESNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTIKVENTVTI 67
           YESN  S+ +AA L++NGF+ +LK+WWD+ LS E +E IK  KTKV  +R IKVE     
Sbjct: 267 YESNGHSNREAAMLLINGFSGSLKLWWDHALSTERKEAIKRQKTKV--RRIIKVE----- 326

Query: 68  EKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKILKNLQC 125
                  +GAST++EV   EEIE+VV TL+  I  +F   +D   EN+RKI+KNL+C
Sbjct: 327 -------EGASTTQEV--EEEIENVVETLLYAINLHFGLGSDTDVENQRKIIKNLKC 367

BLAST of HG10017751 vs. ExPASy TrEMBL
Match: A0A7N0TFT4 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 44/124 (35.48%), Postives = 60/124 (48.39%), Query Frame = 0

Query: 1   MLMAASVYESNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTIK 60
           MLM +++ ++   +D   AK+I  GFT  LK WWDN L+P  R+ I T         TIK
Sbjct: 200 MLMYSTISKTAGNTDSNIAKMITAGFTGQLKGWWDNYLTPRNRDEILT---------TIK 259

Query: 61  VENTVTIEKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKILK 120
            E                      +G  IE+VV TLV NI  +FT +     EN R +L+
Sbjct: 260 QE----------------------DGRLIENVVYTLVINIMEHFTGSVSDNNENIRTLLQ 292

Query: 121 NLQC 125
           NL+C
Sbjct: 320 NLRC 292

BLAST of HG10017751 vs. ExPASy TrEMBL
Match: A0A6J1EZI3 (uncharacterized protein LOC111440658 OS=Cucurbita moschata OX=3662 GN=LOC111440658 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 43/125 (34.40%), Postives = 60/125 (48.00%), Query Frame = 0

Query: 1   MLMAASVYE-SNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTI 60
           M+MAA  Y+     SDHQ A++++ GFT  LK WWD  L    R+ I  H          
Sbjct: 31  MMMAAGAYKLQRHKSDHQIAQVLVTGFTGQLKDWWDKYLDETTRQQILNHYV-------- 90

Query: 61  KVENTVTIEKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKIL 120
            +  T  I K+    +G ST  E V+ E +ED V TL+  +  +F        E   +IL
Sbjct: 91  -IRPTTQIIKE----EGPSTRTE-VQHERVEDAVNTLIYTLIEFFVGDPLKYQERSAEIL 141

Query: 121 KNLQC 125
            NL+C
Sbjct: 151 MNLKC 141

BLAST of HG10017751 vs. ExPASy TrEMBL
Match: A0A7N0VB35 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 43/124 (34.68%), Postives = 58/124 (46.77%), Query Frame = 0

Query: 1   MLMAASVYESNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTIK 60
           MLM +++ ++   +D   AK+I  GFT  LK WWDN L+P  R+ I T         TIK
Sbjct: 200 MLMYSTISKTAGNTDSNIAKMITAGFTGQLKGWWDNYLTPRNRDEILT---------TIK 259

Query: 61  VENTVTIEKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKILK 120
            E                      +G  IE+ V TLV NI  +FT       EN R +L+
Sbjct: 260 QE----------------------DGRVIENAVYTLVINIMEHFTGRVSDNNENIRTLLQ 292

Query: 121 NLQC 125
           NL+C
Sbjct: 320 NLRC 292

BLAST of HG10017751 vs. ExPASy TrEMBL
Match: A0A7N0TAF9 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 43/124 (34.68%), Postives = 58/124 (46.77%), Query Frame = 0

Query: 1   MLMAASVYESNDLSDHQAAKLILNGFTSTLKMWWDNCLSPEAREHIKTHKTKVKKKRTIK 60
           MLM +++ ++   +D   AK+I  GFT  LK WWDN L+P  R+ I T         TIK
Sbjct: 200 MLMYSTISKTAGNTDSNIAKMITAGFTGQLKGWWDNYLTPRNRDEILT---------TIK 259

Query: 61  VENTVTIEKDGKPIDGASTSKEVVEGEEIEDVVATLVDNIAYYFTSTNDCGAENRRKILK 120
            E                      +G  IE+ V TLV NI  +FT       EN R +L+
Sbjct: 260 QE----------------------DGRVIENAVYTLVINIMEHFTGRVSDNNENIRTLLQ 292

Query: 121 NLQC 125
           NL+C
Sbjct: 320 NLRC 292

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056258.11.5e-1648.72hypothetical protein E6C27_scaffold226G00260 [Cucumis melo var. makuwa][more]
KAG5631284.12.4e-0633.87hypothetical protein H5410_003001 [Solanum commersonii][more]
XP_023522280.12.4e-0634.40uncharacterized protein LOC111786173, partial [Cucurbita pepo subsp. pepo][more]
XP_023521035.13.2e-0634.40uncharacterized protein LOC111784623 [Cucurbita pepo subsp. pepo][more]
XP_028107153.13.2e-0628.00uncharacterized protein LOC114306167 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UMD87.4e-1748.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A7N0TFT46.9e-0735.48Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A6J1EZI32.0e-0634.40uncharacterized protein LOC111440658 OS=Cucurbita moschata OX=3662 GN=LOC1114406... [more]
A0A7N0VB352.6e-0634.68Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A7N0TAF92.6e-0634.68Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017751.1HG10017751.1mRNA