HG10017740 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017740
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	polyamine-modulated factor 1-binding protein 1
Location	Chr03: 20856943 .. 20857257 (-)
RNA-Seq Expression	HG10017740
Synteny	HG10017740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATGACTCGAAGTTGCAGAGCTTGAAATCATTGAACGAACAACTTCTTAAGGAGATGGTCGAGAAGAGAGTGGAGGTCAGTGATCTTGTGAAGAGTAAAGAAGCATTGGAACTCGACTTGAAGCGGAATGTGAACGCGAAAGAACAAGAAATGGGTGAGTTGAGTAAGGCTCGTGATTGGGTTTATGGGTTGGAATTGGAAAGAAATGTGGATTTTGTTTATTTGCAGAGTTTAATAGAAGAAATGGGTGGTGGGATTTATGGGGTACTCGAGAGTGAAAGAGTTAAGGGTTTAGAATTAGGAATTTGA

mRNA sequence

ATGGATCATGACTCGAAGTTGCAGAGCTTGAAATCATTGAACGAACAACTTCTTAAGGAGATGGTCGAGAAGAGAGTGGAGGTCAGTGATCTTGTGAAGAGTAAAGAAGCATTGGAACTCGACTTGAAGCGGAATGTGAACGCGAAAGAACAAGAAATGGGTGAGTTGAGTAAGGCTCGTGATTGGGTTTATGGGTTGGAATTGGAAAGAAATGTGGATTTTGTTTATTTGCAGAGTTTAATAGAAGAAATGGGTGGTGGGATTTATGGGGTACTCGAGAGTGAAAGAGTTAAGGGTTTAGAATTAGGAATTTGA

Coding sequence (CDS)

ATGGATCATGACTCGAAGTTGCAGAGCTTGAAATCATTGAACGAACAACTTCTTAAGGAGATGGTCGAGAAGAGAGTGGAGGTCAGTGATCTTGTGAAGAGTAAAGAAGCATTGGAACTCGACTTGAAGCGGAATGTGAACGCGAAAGAACAAGAAATGGGTGAGTTGAGTAAGGCTCGTGATTGGGTTTATGGGTTGGAATTGGAAAGAAATGTGGATTTTGTTTATTTGCAGAGTTTAATAGAAGAAATGGGTGGTGGGATTTATGGGGTACTCGAGAGTGAAAGAGTTAAGGGTTTAGAATTAGGAATTTGA

Protein sequence

MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLELGI

Homology

[Close]

BLAST of HG10017740 vs. NCBI nr
Match: XP_011648795.1 (desmoplakin [Cucumis sativus] >KGN60890.2 hypothetical protein Csa_023473 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 3.6e-35
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 1   MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKAR 60
           MD DSKLQSLKSLNE+LLKEMVEKRVEV DLV+SKEALELDLKRNVN KEQ MGELS+AR
Sbjct: 33  MDDDSKLQSLKSLNERLLKEMVEKRVEVGDLVQSKEALELDLKRNVNEKEQVMGELSEAR 92

Query: 61  DWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLEL 103
           D VYGLELERNV  VYLQS I+EMGGGI G+LESERVKGLE+
Sbjct: 93  DGVYGLELERNVVCVYLQSRIQEMGGGICGLLESERVKGLEI 134

[Close]

BLAST of HG10017740 vs. NCBI nr
Match: XP_008455286.1 (PREDICTED: cingulin [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-34
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKAR 60
           MD DSKLQSLKSLNE+LLKEMVEKRV V DLV++KEALELDLKRNVN KEQ MGELS+AR
Sbjct: 33  MDDDSKLQSLKSLNERLLKEMVEKRVVVGDLVQTKEALELDLKRNVNEKEQVMGELSEAR 92

Query: 61  DWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLEL 103
           D VYGLELERNV  VYLQS IEEM GGI+G+LESERVKGLE+
Sbjct: 93  DGVYGLELERNVVCVYLQSRIEEMSGGIFGLLESERVKGLEI 134

[Close]

BLAST of HG10017740 vs. NCBI nr
Match: KAA0063670.1 (cingulin [Cucumis melo var. makuwa] >TYK18356.1 cingulin [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-34
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKAR 60
           MD DSKLQSLKSLNE+LLKEMVEKRV V DLV++KEALELDLKRNVN KEQ MGELS+AR
Sbjct: 33  MDDDSKLQSLKSLNERLLKEMVEKRVVVGDLVQTKEALELDLKRNVNEKEQVMGELSEAR 92

Query: 61  DWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLEL 103
           D VYGLELERNV  VYLQS IEEM GGI+G+LESERVKGLE+
Sbjct: 93  DGVYGLELERNVVCVYLQSRIEEMSGGIFGLLESERVKGLEI 134

[Close]

BLAST of HG10017740 vs. NCBI nr
Match: XP_038889361.1 (paramyosin-like [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 3.7e-32
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKAR 60
           MD DSKLQSLKSLNE+LLK++VEKRVEV DLV SKEALELDLKRNV+ KEQ MGEL++AR
Sbjct: 33  MDDDSKLQSLKSLNERLLKQVVEKRVEVGDLVHSKEALELDLKRNVDEKEQVMGELTEAR 92

Query: 61  DWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLEL 103
           D VYGLELERNV  VYLQS +EEMG G+ G+LESERVKGLE+
Sbjct: 93  DGVYGLELERNVVCVYLQSRMEEMGNGMCGLLESERVKGLEI 134

[Close]

BLAST of HG10017740 vs. NCBI nr
Match: XP_022150832.1 (myosin-2 heavy chain, non muscle-like [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21
Identity = 62/103 (60.19%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 6   KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYG 65
           KLQSLKSLN++L+KE  E+R+EV  LVK+K+ALE+DLKRNV+ K Q MGEL +A + +YG
Sbjct: 40  KLQSLKSLNDRLVKETHERRMEVGALVKTKDALEIDLKRNVDEKNQVMGELGEACEGIYG 99

Query: 66  LELERNVDFVYLQSLIEEMGGGIYGVL----ESERVKGLELGI 105
           L+LE+NV  V+LQS +EEMGGGI G++    ESER+K +E+G+
Sbjct: 100 LDLEKNVVSVFLQSQMEEMGGGICGLMAEKRESERLKEMEIGL 142

[Close]

BLAST of HG10017740 vs. ExPASy TrEMBL
Match: A0A0A0LII4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G015350 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 1   MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKAR 60
           MD DSKLQSLKSLNE+LLKEMVEKRVEV DLV+SKEALELDLKRNVN KEQ MGELS+AR
Sbjct: 33  MDDDSKLQSLKSLNERLLKEMVEKRVEVGDLVQSKEALELDLKRNVNEKEQVMGELSEAR 92

Query: 61  DWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLEL 103
           D VYGLELERNV  VYLQS I+EMGGGI G+LESERVKGLE+
Sbjct: 93  DGVYGLELERNVVCVYLQSRIQEMGGGICGLLESERVKGLEI 134

[Close]

BLAST of HG10017740 vs. ExPASy TrEMBL
Match: A0A5D3D489 (Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKAR 60
           MD DSKLQSLKSLNE+LLKEMVEKRV V DLV++KEALELDLKRNVN KEQ MGELS+AR
Sbjct: 33  MDDDSKLQSLKSLNERLLKEMVEKRVVVGDLVQTKEALELDLKRNVNEKEQVMGELSEAR 92

Query: 61  DWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLEL 103
           D VYGLELERNV  VYLQS IEEM GGI+G+LESERVKGLE+
Sbjct: 93  DGVYGLELERNVVCVYLQSRIEEMSGGIFGLLESERVKGLEI 134

[Close]

BLAST of HG10017740 vs. ExPASy TrEMBL
Match: A0A1S3C0Q0 (cingulin OS=Cucumis melo OX=3656 GN=LOC103495485 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKAR 60
           MD DSKLQSLKSLNE+LLKEMVEKRV V DLV++KEALELDLKRNVN KEQ MGELS+AR
Sbjct: 33  MDDDSKLQSLKSLNERLLKEMVEKRVVVGDLVQTKEALELDLKRNVNEKEQVMGELSEAR 92

Query: 61  DWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLEL 103
           D VYGLELERNV  VYLQS IEEM GGI+G+LESERVKGLE+
Sbjct: 93  DGVYGLELERNVVCVYLQSRIEEMSGGIFGLLESERVKGLEI 134

[Close]

BLAST of HG10017740 vs. ExPASy TrEMBL
Match: A0A6J1DBU6 (myosin-2 heavy chain, non muscle-like OS=Momordica charantia OX=3673 GN=LOC111018880 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.9e-22
Identity = 62/103 (60.19%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 6   KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYG 65
           KLQSLKSLN++L+KE  E+R+EV  LVK+K+ALE+DLKRNV+ K Q MGEL +A + +YG
Sbjct: 40  KLQSLKSLNDRLVKETHERRMEVGALVKTKDALEIDLKRNVDEKNQVMGELGEACEGIYG 99

Query: 66  LELERNVDFVYLQSLIEEMGGGIYGVL----ESERVKGLELGI 105
           L+LE+NV  V+LQS +EEMGGGI G++    ESER+K +E+G+
Sbjct: 100 LDLEKNVVSVFLQSQMEEMGGGICGLMAEKRESERLKEMEIGL 142

[Close]

BLAST of HG10017740 vs. ExPASy TrEMBL
Match: A0A6J1FD80 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444320 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.6e-20
Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 5   SKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVY 64
           S+LQSLKSLNE+LLKE  EKR E   LV++KE LELDLK+N + K+Q M ELS A D V 
Sbjct: 42  SQLQSLKSLNERLLKETHEKRKEFGALVQAKEGLELDLKKNADEKKQVMCELSVACDGVS 101

Query: 65  GLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLELG 104
           GLELERNV  VYLQ+ +EEMGG I  ++ESERVK +E+G
Sbjct: 102 GLELERNVVHVYLQTQMEEMGGVICRLVESERVKNVEIG 140

[Close]

BLAST of HG10017740 vs. TAIR 10
Match: AT3G05130.1 (BEST Arabidopsis thaliana protein match is: Prefoldin chaperone subunit family protein (TAIR:AT5G27330.1); Has 171032 Blast hits to 82560 proteins in 3364 species: Archae - 2835; Bacteria - 33550; Metazoa - 71995; Fungi - 13365; Plants - 9598; Viruses - 592; Other Eukaryotes - 39097 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 2   DHDS---KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSK 61
           +HDS   + Q+LKSLN  LLK+ +EKR ++  LV++K+ LE +L R    K     EL +
Sbjct: 44  EHDSSEEQFQNLKSLNAMLLKQAMEKRNQIDSLVQAKDELETELARYCQEKTGLRDELDQ 103

Query: 62  ARDWVYGLELERNVDFVYLQSLIEEMGGGI 89
             D  +GL+ E +   V+++S   EM  G+
Sbjct: 104 VSDENFGLKFELDFVIVFVESQFREMCVGV 133

[Close]

BLAST of HG10017740 vs. TAIR 10
Match: AT5G27330.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 50.8 bits (120), Expect = 7.5e-07
Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 2   DHDS---KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSK 61
           DHDS   K Q+LKSLN  LLK+ +EKR ++  L ++K++LE++L R+   K     EL  
Sbjct: 43  DHDSSEEKFQNLKSLNAILLKQTMEKRQQIESLFQAKDSLEIELVRSGKEKTLLREELCG 102

Query: 62  ARDWVYGLELERNVDFVYLQSLIEEMG 86
           + D  + L++E ++   +++  ++EMG
Sbjct: 103 SSDENFMLKIEMDLLMGFVEGRVKEMG 129

The following BLAST results are available for this feature:

BLAST of HG10017740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648795.1	3.6e-35	85.29	desmoplakin [Cucumis sativus] >KGN60890.2 hypothetical protein Csa_023473 [Cucum...	[more]
XP_008455286.1	3.0e-34	83.33	PREDICTED: cingulin [Cucumis melo]	[more]
KAA0063670.1	3.0e-34	83.33	cingulin [Cucumis melo var. makuwa] >TYK18356.1 cingulin [Cucumis melo var. maku...	[more]
XP_038889361.1	3.7e-32	79.41	paramyosin-like [Benincasa hispida]	[more]
XP_022150832.1	1.0e-21	60.19	myosin-2 heavy chain, non muscle-like [Momordica charantia]	[more]

BLAST of HG10017740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LII4	1.7e-35	85.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G015350 PE=4 SV=1	[more]
A0A5D3D489	1.5e-34	83.33	Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 ...	[more]
A0A1S3C0Q0	1.5e-34	83.33	cingulin OS=Cucumis melo OX=3656 GN=LOC103495485 PE=4 SV=1	[more]
A0A6J1DBU6	4.9e-22	60.19	myosin-2 heavy chain, non muscle-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1FD80	1.6e-20	64.65	polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of HG10017740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05130.1	1.2e-07	37.78	BEST Arabidopsis thaliana protein match is: Prefoldin chaperone subunit family p...	[more]
AT5G27330.1	7.5e-07	36.78	Prefoldin chaperone subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 7..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017740.1	HG10017740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome