HG10017688 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017688
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
LocationChr03: 18916724 .. 18916885 (+)
RNA-Seq ExpressionHG10017688
SyntenyHG10017688
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATGGCTTGCAGTCCGAATGCACTAGGCATCGGATACGGGGCGATGATTCGGAATGACAGAGGGGAGGTCGTTGCTACCCAAGCTCTATGTCGGTTGGAGTGTCTGCTGGTGGAAGCTGGGGAAGTGATAGCTATCATGATGGTTTGCAGTTGGTAG

mRNA sequence

ATGGATATGGCTTGCAGTCCGAATGCACTAGGCATCGGATACGGGGCGATGATTCGGAATGACAGAGGGGAGGTCGTTGCTACCCAAGCTCTATGTCGGTTGGAGTGTCTGCTGGTGGAAGCTGGGGAAGTGATAGCTATCATGATGGTTTGCAGTTGGTAG

Coding sequence (CDS)

ATGGATATGGCTTGCAGTCCGAATGCACTAGGCATCGGATACGGGGCGATGATTCGGAATGACAGAGGGGAGGTCGTTGCTACCCAAGCTCTATGTCGGTTGGAGTGTCTGCTGGTGGAAGCTGGGGAAGTGATAGCTATCATGATGGTTTGCAGTTGGTAG

Protein sequence

MDMACSPNALGIGYGAMIRNDRGEVVATQALCRLECLLVEAGEVIAIMMVCSW
Homology
[Close]
BLAST of HG10017688 vs. NCBI nr
Match: KAA0031982.1 (hypothetical protein E6C27_scaffold134G00730 [Cucumis melo var. makuwa] >TYK16802.1 hypothetical protein E5676_scaffold96G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1  MDMACSPNALGIGYGAMIRNDRGEVVATQALCRLECLLVEAGEVIAIM 49
          +D+ACSPN  G GYG ++RND+GE+V  QA CR E  LVEAG+++AIM
Sbjct: 3  VDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIM 50

[Close]
BLAST of HG10017688 vs. ExPASy TrEMBL
Match: A0A5A7SLR6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00670 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1  MDMACSPNALGIGYGAMIRNDRGEVVATQALCRLECLLVEAGEVIAIM 49
          +D+ACSPN  G GYG ++RND+GE+V  QA CR E  LVEAG+++AIM
Sbjct: 3  VDVACSPNNKGNGYGVVLRNDKGEIVLAQAFCRGESFLVEAGKIMAIM 50

The following BLAST results are available for this feature:
BLAST of HG10017688 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031982.12.1e-0760.42hypothetical protein E6C27_scaffold134G00730 [Cucumis melo var. makuwa] >TYK1680... [more]
BLAST of HG10017688 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10017688 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SLR61.0e-0760.42RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of HG10017688 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017688.1HG10017688.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity