HG10017622 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017622
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 17012760 .. 17013014 (+)
RNA-Seq ExpressionHG10017622
SyntenyHG10017622
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGGCTTCAATACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCCTCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCCTCGGAAGCCATTAATAGGGCAGGTGTGACCTTCAAAACCCCTCTAAGAGGCAACAAAGTTGAAGAAAATGATGATCATGGTGATGAATCCAAGAGCTTGATCATTCAAAAGGCTGATAAATCATCATTGATTCTCAAGCATCAAATCAAGACTTCTTCAACTTTCTAA

mRNA sequence

ATGGCTGGGCTTCAATACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCCTCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCCTCGGAAGCCATTAATAGGGCAGGTGTGACCTTCAAAACCCCTCTAAGAGGCAACAAAGTTGAAGAAAATGATGATCATGGTGATGAATCCAAGAGCTTGATCATTCAAAAGGCTGATAAATCATCATTGATTCTCAAGCATCAAATCAAGACTTCTTCAACTTTCTAA

Coding sequence (CDS)

ATGGCTGGGCTTCAATACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCCTCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCCTCGGAAGCCATTAATAGGGCAGGTGTGACCTTCAAAACCCCTCTAAGAGGCAACAAAGTTGAAGAAAATGATGATCATGGTGATGAATCCAAGAGCTTGATCATTCAAAAGGCTGATAAATCATCATTGATTCTCAAGCATCAAATCAAGACTTCTTCAACTTTCTAA

Protein sequence

MAGLQYNFFPTDLLYPKPSSSASSSSSSSSEAINRAGVTFKTPLRGNKVEENDDHGDESKSLIIQKADKSSLILKHQIKTSSTF
Homology
BLAST of HG10017622 vs. NCBI nr
Match: KAG6603410.1 (hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 7.4e-23
Identity = 64/85 (75.29%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKP--SSSASSSSSSSSEAINRAGVTFKTPLRGNKVEENDDHGDE 60
          MAGLQYNFFPTDLLYPKP  SSS+SSSSSSSS+AINRA VTFK P+RGN+ +E DDHGD 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQ-DEEDDHGDG 60

Query: 61 SKSLIIQKADKSSLILKHQIKTSST 84
          +KSL IQK D+S LILKHQ+K  S+
Sbjct: 61 AKSLSIQKGDRSPLILKHQVKNDSS 84

BLAST of HG10017622 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_018873 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-21
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSASSSSSSSSEAINRAGVTFKTPLRGNKVEEND-DHGDES 60
          MAGLQYNFFPTDLLYPKP     SSSSSSSEAINRA VTFKTPLRGNK ++ D DHGDE 
Sbjct: 1  MAGLQYNFFPTDLLYPKP-----SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEP 60

Query: 61 KS--LIIQKADKSSLILKHQIKTSST 84
          KS  +I QK D+S LILKHQIK++S+
Sbjct: 61 KSRLMISQKVDRSPLILKHQIKSTSS 81

BLAST of HG10017622 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical protein E6C27_scaffold827G00560 [Cucumis melo var. makuwa] >TYK28218.1 hypothetical protein E5676_scaffold258G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSASSSSSSSSEAINRAGVTFKTPLRGNKVEENDDHGDESK 60
          MAGLQYNFFPTDLLYPKP     SSSSSSSEAINRA VTFKT LRGNK EE+ DHGDE K
Sbjct: 1  MAGLQYNFFPTDLLYPKP-----SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERK 60

Query: 61 S-LIIQK-ADKSSLILKHQIK-TSSTF 85
          S L  QK AD+S LILKHQ K TSSTF
Sbjct: 61 SRLFSQKVADRSPLILKHQSKSTSSTF 82

BLAST of HG10017622 vs. ExPASy TrEMBL
Match: A0A0A0KWJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSASSSSSSSSEAINRAGVTFKTPLRGNKVEEND-DHGDES 60
          MAGLQYNFFPTDLLYPKP     SSSSSSSEAINRA VTFKTPLRGNK ++ D DHGDE 
Sbjct: 1  MAGLQYNFFPTDLLYPKP-----SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEP 60

Query: 61 KS--LIIQKADKSSLILKHQIKTSST 84
          KS  +I QK D+S LILKHQIK++S+
Sbjct: 61 KSRLMISQKVDRSPLILKHQIKSTSS 81

BLAST of HG10017622 vs. ExPASy TrEMBL
Match: A0A5A7V9D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00320 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.8e-21
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSASSSSSSSSEAINRAGVTFKTPLRGNKVEENDDHGDESK 60
          MAGLQYNFFPTDLLYPKP     SSSSSSSEAINRA VTFKT LRGNK EE+ DHGDE K
Sbjct: 1  MAGLQYNFFPTDLLYPKP-----SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERK 60

Query: 61 S-LIIQK-ADKSSLILKHQIK-TSSTF 85
          S L  QK AD+S LILKHQ K TSSTF
Sbjct: 61 SRLFSQKVADRSPLILKHQSKSTSSTF 82

BLAST of HG10017622 vs. ExPASy TrEMBL
Match: E5GC02 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.8e-21
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSASSSSSSSSEAINRAGVTFKTPLRGNKVEENDDHGDESK 60
          MAGLQYNFFPTDLLYPKP     SSSSSSSEAINRA VTFKT LRGNK EE+ DHGDE K
Sbjct: 1  MAGLQYNFFPTDLLYPKP-----SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERK 60

Query: 61 S-LIIQK-ADKSSLILKHQIK-TSSTF 85
          S L  QK AD+S LILKHQ K TSSTF
Sbjct: 61 SRLFSQKVADRSPLILKHQSKSTSSTF 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6603410.17.4e-2375.29hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN53975.12.4e-2174.42hypothetical protein Csa_018873 [Cucumis sativus][more]
ADN34001.12.0e-2078.16hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWJ21.2e-2174.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1[more]
A0A5A7V9D39.8e-2178.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GC029.8e-2178.16Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017622.1HG10017622.1mRNA