HG10017620 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017620
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	kinesin-4 isoform X2
Location	Chr03: 16990160 .. 16990650 (+)
RNA-Seq Expression	HG10017620
Synteny	HG10017620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGTAGGCCAACGGCCAACGTTAATAAGGATAACCATAATGTTTGTTTATAGAAATAAACTTAACATAAACTCTTTCCAAAATTGTTGCAGGAATCGACAAAATTTGATAGAATTGCATACTCCAATGCAAGGTACATGTAATATTGATCTCGAGATGTCACCCTTTACGACTAATTCAAGGATGCAGAGGAGGCAATCTTTAACTGGCATCCAAATGACAGGGTCAGGCAAATCTAGAAGATCATCTCTTGGAGGAAAACCAAGTGACTCAAGTTAGTAAAACTAACTTGAACATTGATAGATTTTATACATCGCCATATCTCTCCTATAGCTTTTATGGAAGTTTTTCATTGTTGTCAAAACTTGACTAAGGATCCAAGCTTCATGTTGTGTTTTGCAGATGTTCAAAAAGTAATAGACACTAGAAATGCGAGGACCCCTCCACCGGTCCATCCGTCAATTCAGGCAACCAAGCGGTGGCTATAA

mRNA sequence

ATGCATGTAGGCCAACGGCCAACGTTAATAAGGATAACCATAATGTTTGTTTATAGAAATAAACTTAACATAAACTCTTTCCAAAATTGTTGCAGGAATCGACAAAATTTGATAGAATTGCATACTCCAATGCAAGGTACATGTAATATTGATCTCGAGATGTCACCCTTTACGACTAATTCAAGGATGCAGAGGAGGCAATCTTTAACTGGCATCCAAATGACAGGGTCAGGCAAATCTAGAAGATCATCTCTTGGAGGAAAACCAAGTGACTCAAATGTTCAAAAAGTAATAGACACTAGAAATGCGAGGACCCCTCCACCGGTCCATCCGTCAATTCAGGCAACCAAGCGGTGGCTATAA

Coding sequence (CDS)

ATGCATGTAGGCCAACGGCCAACGTTAATAAGGATAACCATAATGTTTGTTTATAGAAATAAACTTAACATAAACTCTTTCCAAAATTGTTGCAGGAATCGACAAAATTTGATAGAATTGCATACTCCAATGCAAGGTACATGTAATATTGATCTCGAGATGTCACCCTTTACGACTAATTCAAGGATGCAGAGGAGGCAATCTTTAACTGGCATCCAAATGACAGGGTCAGGCAAATCTAGAAGATCATCTCTTGGAGGAAAACCAAGTGACTCAAATGTTCAAAAAGTAATAGACACTAGAAATGCGAGGACCCCTCCACCGGTCCATCCGTCAATTCAGGCAACCAAGCGGTGGCTATAA

Protein sequence

MHVGQRPTLIRITIMFVYRNKLNINSFQNCCRNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKSRRSSLGGKPSDSNVQKVIDTRNARTPPPVHPSIQATKRWL

Homology

[Close]

BLAST of HG10017620 vs. NCBI nr
Match: XP_038883464.1 (kinesin-like protein KIN-14L isoform X2 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 4.9e-36
Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 32   RNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKSRRSSLGGKPSD 91
            RNRQNLIEL TPMQ  CNIDLEMSPF TNSRMQRRQSLTGIQMTGS KSRRSSLGGKP D
Sbjct: 947  RNRQNLIELRTPMQVNCNIDLEMSPFPTNSRMQRRQSLTGIQMTGSSKSRRSSLGGKPGD 1006

Query: 92   SNVQKVIDTRNARTPPPVHPSIQATKRWL 121
            SNV+KVIDTRNARTPPPVHPS QATKRWL
Sbjct: 1007 SNVEKVIDTRNARTPPPVHPSTQATKRWL 1035

[Close]

BLAST of HG10017620 vs. NCBI nr
Match: XP_038883465.1 (kinesin-like protein KIN-14L isoform X3 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 4.9e-36
Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 32  RNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKSRRSSLGGKPSD 91
           RNRQNLIEL TPMQ  CNIDLEMSPF TNSRMQRRQSLTGIQMTGS KSRRSSLGGKP D
Sbjct: 800 RNRQNLIELRTPMQVNCNIDLEMSPFPTNSRMQRRQSLTGIQMTGSSKSRRSSLGGKPGD 859

Query: 92  SNVQKVIDTRNARTPPPVHPSIQATKRWL 121
           SNV+KVIDTRNARTPPPVHPS QATKRWL
Sbjct: 860 SNVEKVIDTRNARTPPPVHPSTQATKRWL 888

[Close]

BLAST of HG10017620 vs. NCBI nr
Match: XP_038883462.1 (kinesin-like protein KIN-14L isoform X1 [Benincasa hispida] >XP_038883463.1 kinesin-like protein KIN-14L isoform X1 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 4.9e-36
Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 32   RNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKSRRSSLGGKPSD 91
            RNRQNLIEL TPMQ  CNIDLEMSPF TNSRMQRRQSLTGIQMTGS KSRRSSLGGKP D
Sbjct: 948  RNRQNLIELRTPMQVNCNIDLEMSPFPTNSRMQRRQSLTGIQMTGSSKSRRSSLGGKPGD 1007

Query: 92   SNVQKVIDTRNARTPPPVHPSIQATKRWL 121
            SNV+KVIDTRNARTPPPVHPS QATKRWL
Sbjct: 1008 SNVEKVIDTRNARTPPPVHPSTQATKRWL 1036

[Close]

BLAST of HG10017620 vs. NCBI nr
Match: XP_016902136.1 (PREDICTED: kinesin-4 isoform X2 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-34
Identity = 81/100 (81.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 21   KLNINSFQNCCRNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKS 80
            KL   S +   RNRQNLIELHTP+Q TCNIDLE SPFTTNSRMQRRQSLTGIQMTG GKS
Sbjct: 989  KLINGSEKKYYRNRQNLIELHTPVQVTCNIDLETSPFTTNSRMQRRQSLTGIQMTGPGKS 1048

Query: 81   RRSSLGGKPSDSNVQKVIDTRNARTPPPVHPSIQATKRWL 121
            RRSSLGGKP DS+VQ VIDTRNARTPP V+PS Q TKRWL
Sbjct: 1049 RRSSLGGKPGDSHVQNVIDTRNARTPPSVYPSTQVTKRWL 1088

[Close]

BLAST of HG10017620 vs. NCBI nr
Match: XP_008457606.1 (PREDICTED: kinesin-4 isoform X1 [Cucumis melo] >XP_016902134.1 PREDICTED: kinesin-4 isoform X1 [Cucumis melo] >XP_016902135.1 PREDICTED: kinesin-4 isoform X1 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-34
Identity = 81/100 (81.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 21   KLNINSFQNCCRNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKS 80
            KL   S +   RNRQNLIELHTP+Q TCNIDLE SPFTTNSRMQRRQSLTGIQMTG GKS
Sbjct: 990  KLINGSEKKYYRNRQNLIELHTPVQVTCNIDLETSPFTTNSRMQRRQSLTGIQMTGPGKS 1049

Query: 81   RRSSLGGKPSDSNVQKVIDTRNARTPPPVHPSIQATKRWL 121
            RRSSLGGKP DS+VQ VIDTRNARTPP V+PS Q TKRWL
Sbjct: 1050 RRSSLGGKPGDSHVQNVIDTRNARTPPSVYPSTQVTKRWL 1089

[Close]

BLAST of HG10017620 vs. ExPASy Swiss-Prot
Match: B9EUM5 (Kinesin-like protein KIN-14A OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14A PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 9.3e-06
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 55  SPFTTNSRMQRRQSLTGIQMTGSGKSRRSSLGGKPSDSNVQKVIDTRNARTPPPVHPSIQ 114
           S  T + R++RRQSLTG+    S  SRRSSLGGK    +     D R A+TPPPV+ + +
Sbjct: 895 SSITPDLRLRRRQSLTGLPPPPSTMSRRSSLGGKSDIGS-----DKRGAKTPPPVNSAAK 954

Query: 115 ATKRWL 121
           A KRWL
Sbjct: 955 A-KRWL 954

[Close]

BLAST of HG10017620 vs. ExPASy TrEMBL
Match: A0A1S3C6J7 (kinesin-4 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497262 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 81/100 (81.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 21   KLNINSFQNCCRNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKS 80
            KL   S +   RNRQNLIELHTP+Q TCNIDLE SPFTTNSRMQRRQSLTGIQMTG GKS
Sbjct: 986  KLINGSEKKYYRNRQNLIELHTPVQVTCNIDLETSPFTTNSRMQRRQSLTGIQMTGPGKS 1045

Query: 81   RRSSLGGKPSDSNVQKVIDTRNARTPPPVHPSIQATKRWL 121
            RRSSLGGKP DS+VQ VIDTRNARTPP V+PS Q TKRWL
Sbjct: 1046 RRSSLGGKPGDSHVQNVIDTRNARTPPSVYPSTQVTKRWL 1085

[Close]

BLAST of HG10017620 vs. ExPASy TrEMBL
Match: A0A1S3C606 (kinesin-4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497262 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 81/100 (81.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 21   KLNINSFQNCCRNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKS 80
            KL   S +   RNRQNLIELHTP+Q TCNIDLE SPFTTNSRMQRRQSLTGIQMTG GKS
Sbjct: 990  KLINGSEKKYYRNRQNLIELHTPVQVTCNIDLETSPFTTNSRMQRRQSLTGIQMTGPGKS 1049

Query: 81   RRSSLGGKPSDSNVQKVIDTRNARTPPPVHPSIQATKRWL 121
            RRSSLGGKP DS+VQ VIDTRNARTPP V+PS Q TKRWL
Sbjct: 1050 RRSSLGGKPGDSHVQNVIDTRNARTPPSVYPSTQVTKRWL 1089

[Close]

BLAST of HG10017620 vs. ExPASy TrEMBL
Match: A0A1S4E1N3 (kinesin-4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497262 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 81/100 (81.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 21   KLNINSFQNCCRNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKS 80
            KL   S +   RNRQNLIELHTP+Q TCNIDLE SPFTTNSRMQRRQSLTGIQMTG GKS
Sbjct: 989  KLINGSEKKYYRNRQNLIELHTPVQVTCNIDLETSPFTTNSRMQRRQSLTGIQMTGPGKS 1048

Query: 81   RRSSLGGKPSDSNVQKVIDTRNARTPPPVHPSIQATKRWL 121
            RRSSLGGKP DS+VQ VIDTRNARTPP V+PS Q TKRWL
Sbjct: 1049 RRSSLGGKPGDSHVQNVIDTRNARTPPSVYPSTQVTKRWL 1088

[Close]

BLAST of HG10017620 vs. ExPASy TrEMBL
Match: A0A1S4E1N5 (kinesin-4 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497262 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.9e-34
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 32   RNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKSRRSSLGGKPSD 91
            +NRQNLIELHTP+Q TCNIDLE SPFTTNSRMQRRQSLTGIQMTG GKSRRSSLGGKP D
Sbjct: 998  KNRQNLIELHTPVQVTCNIDLETSPFTTNSRMQRRQSLTGIQMTGPGKSRRSSLGGKPGD 1057

Query: 92   SNVQKVIDTRNARTPPPVHPSIQATKRWL 121
            S+VQ VIDTRNARTPP V+PS Q TKRWL
Sbjct: 1058 SHVQNVIDTRNARTPPSVYPSTQVTKRWL 1086

[Close]

BLAST of HG10017620 vs. ExPASy TrEMBL
Match: A0A5D3DY85 (Kinesin-4 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00210 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.8e-34
Identity = 80/100 (80.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 21   KLNINSFQNCCRNRQNLIELHTPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKS 80
            KL   S +   RN+QNLIELHTP+Q TCNIDLE SPFTTNSRMQRRQSLTGIQMTG GKS
Sbjct: 1002 KLINGSEKKYYRNQQNLIELHTPVQVTCNIDLETSPFTTNSRMQRRQSLTGIQMTGPGKS 1061

Query: 81   RRSSLGGKPSDSNVQKVIDTRNARTPPPVHPSIQATKRWL 121
            RRSSLGGKP DS+VQ VIDTRNARTPP V+PS Q TKRWL
Sbjct: 1062 RRSSLGGKPGDSHVQNVIDTRNARTPPSVYPSTQVTKRWL 1101

[Close]

BLAST of HG10017620 vs. TAIR 10
Match: AT3G10310.1 (P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain )

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 42  TPMQGTCNIDLEMSPFTTNSRMQRRQSLTGIQMTGSGKSRRSSLGGKPSDS 93
           +P+    N     SP T+N++  RRQSLTG+   G  +SRRSS+GGKP ++
Sbjct: 855 SPLGVANNFSHIKSPDTSNAKTMRRQSLTGVMPPGQERSRRSSIGGKPIEN 905

The following BLAST results are available for this feature:

BLAST of HG10017620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883464.1	4.9e-36	91.01	kinesin-like protein KIN-14L isoform X2 [Benincasa hispida]	[more]
XP_038883465.1	4.9e-36	91.01	kinesin-like protein KIN-14L isoform X3 [Benincasa hispida]	[more]
XP_038883462.1	4.9e-36	91.01	kinesin-like protein KIN-14L isoform X1 [Benincasa hispida] >XP_038883463.1 kine...	[more]
XP_016902136.1	2.7e-34	81.00	PREDICTED: kinesin-4 isoform X2 [Cucumis melo]	[more]
XP_008457606.1	2.7e-34	81.00	PREDICTED: kinesin-4 isoform X1 [Cucumis melo] >XP_016902134.1 PREDICTED: kinesi...	[more]

BLAST of HG10017620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9EUM5	9.3e-06	50.00	Kinesin-like protein KIN-14A OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14A ...	[more]

BLAST of HG10017620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C6J7	1.3e-34	81.00	kinesin-4 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497262 PE=3 SV=1	[more]
A0A1S3C606	1.3e-34	81.00	kinesin-4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497262 PE=3 SV=1	[more]
A0A1S4E1N3	1.3e-34	81.00	kinesin-4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497262 PE=3 SV=1	[more]
A0A1S4E1N5	2.9e-34	86.52	kinesin-4 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497262 PE=3 SV=1	[more]
A0A5D3DY85	3.8e-34	80.00	Kinesin-4 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258...	[more]

BLAST of HG10017620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10310.1	1.4e-04	45.10	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017620.1	HG10017620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007018	microtubule-based movement
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003774	cytoskeletal motor activity
molecular_function	GO:0008017	microtubule binding