HG10017594 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017594
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDUF4283 domain-containing protein
LocationChr03: 16492699 .. 16493284 (-)
RNA-Seq ExpressionHG10017594
SyntenyHG10017594
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATGGATGAGGTAAGTGCTCTAAAAACTCAATTGGTTTTTCTTACTAATGCTTTGTCTAAATTGTCTCAAGGAGGCCAAACTCAAGCAAGTCTGCCTTCTATAGCATCTCTAGCGGCAATGGCAAGTCAAAACGAGCAAGGTGGCTAGAGACGGCCAACTATGTAGATAGAGGACAATTTAGAGGCCAACAACAATATCTCACTCACTACCATCCCAACTTGAGGAATCATGAAATTTTCTCTTATGCTAACAACAAGAATGTGTTGCAAGCACCTCAGGGTTTCAATGGTTTGGGCAATGCAAAGATATCATCTTTGGAGGATTTAATGATTGATTTTGTCAAAGAATCAAGGTCAAGGACTACCACATTAGAGAACTCGGTACAAACAATAGCAAGCACCGTACAAAGTCAAGGTAAGGCAATTCAAAGCTTGGAAGTTCAAATTAGTCAAATTGCCATCTCCATCCACACAATGCAAAAAGAGAAATGTCCAAGTTGCCTGGAAAAAAACCCTAAAGAGGAGTGCAAGGCTATCTCTCCAAAGTGGCAGGGAGTTGAACAAGCATGTGGAGATGGATGA

mRNA sequence

ATGAGATGGATGAGGAGGCCAAACTCAAGCAAGTCTGCCTTCTATAGCATCTCTAGCGGCAATGGCAAGTCAAAACGAGCAAGGTGGCTAGAGACGGCCAACTATGTAGATAGAGGACAATTTAGAGGCCAACAACAATATCTCACTCACTACCATCCCAACTTGAGGAATCATGAAATTTTCTCTTATGCTAACAACAAGAATGTGTTGCAAGCACCTCAGGGTTTCAATGGTTTGGGCAATGCAAAGATATCATCTTTGGAGGATTTAATGATTGATTTTGTCAAAGAATCAAGGTCAAGGACTACCACATTAGAGAACTCGGTACAAACAATAGCAAGCACCGTACAAAGTCAAGGTAAGGCAATTCAAAGCTTGGAAGTTCAAATTAGTCAAATTGCCATCTCCATCCACACAATGCAAAAAGAGAAATGTCCAAGTTGCCTGGAAAAAAACCCTAAAGAGGAGTGCAAGGCTATCTCTCCAAAGTGGCAGGGAGTTGAACAAGCATGTGGAGATGGATGA

Coding sequence (CDS)

ATGAGATGGATGAGGAGGCCAAACTCAAGCAAGTCTGCCTTCTATAGCATCTCTAGCGGCAATGGCAAGTCAAAACGAGCAAGGTGGCTAGAGACGGCCAACTATGTAGATAGAGGACAATTTAGAGGCCAACAACAATATCTCACTCACTACCATCCCAACTTGAGGAATCATGAAATTTTCTCTTATGCTAACAACAAGAATGTGTTGCAAGCACCTCAGGGTTTCAATGGTTTGGGCAATGCAAAGATATCATCTTTGGAGGATTTAATGATTGATTTTGTCAAAGAATCAAGGTCAAGGACTACCACATTAGAGAACTCGGTACAAACAATAGCAAGCACCGTACAAAGTCAAGGTAAGGCAATTCAAAGCTTGGAAGTTCAAATTAGTCAAATTGCCATCTCCATCCACACAATGCAAAAAGAGAAATGTCCAAGTTGCCTGGAAAAAAACCCTAAAGAGGAGTGCAAGGCTATCTCTCCAAAGTGGCAGGGAGTTGAACAAGCATGTGGAGATGGATGA

Protein sequence

MRWMRRPNSSKSAFYSISSGNGKSKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSCLEKNPKEECKAISPKWQGVEQACGDG
Homology
BLAST of HG10017594 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 201.4 bits (511), Expect = 6.2e-48
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 0

Query: 31  ETANYVDRGQFRG--QQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAKISSLE 90
           ETANYVDRG +R    QQ  THYHPNLRNHE FSYANNKNVLQAPQGFNG GNAK SSLE
Sbjct: 330 ETANYVDRGHYRNYQHQQLPTHYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSSLE 389

Query: 91  DLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSC 150
           D+M+DFVKESRSRTTTLENSVQ IASTVQSQGKA+Q+LEVQ+SQ+  S+ TMQK K PSC
Sbjct: 390 DIMLDFVKESRSRTTTLENSVQAIASTVQSQGKALQNLEVQLSQMKTSLQTMQKGKFPSC 449

Query: 151 LEKNPKEECKAIS 162
            E NP+EECKA++
Sbjct: 450 PEINPREECKAVT 462

BLAST of HG10017594 vs. NCBI nr
Match: WP_217833148.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 132.1 bits (331), Expect = 4.6e-27
Identity = 77/121 (63.64%), Postives = 87/121 (71.90%), Query Frame = 0

Query: 41  FRG--QQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLG---NAKISSLEDLMIDFV 100
           +RG   QQ  THYHPNLRNHE FSYANN+NVLQ P G + +G     K S+LEDLMI+F+
Sbjct: 2   YRGHQHQQLPTHYHPNLRNHENFSYANNRNVLQGPPGLSNVGPSHTEKKSNLEDLMIEFI 61

Query: 101 KESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSCLEKNPKE 157
           KESR RTT LE       STVQS GKAI ++EVQISQIA S+ TMQK K  SC E NPKE
Sbjct: 62  KESRGRTTALE-------STVQSHGKAIHNIEVQISQIATSLQTMQKGKFSSCPEINPKE 115

BLAST of HG10017594 vs. NCBI nr
Match: XP_022868533.1 (uncharacterized protein LOC111388104 [Olea europaea var. sylvestris])

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-20
Identity = 64/146 (43.84%), Postives = 90/146 (61.64%), Query Frame = 0

Query: 16  SISSGNGKSKRARWLETANYVDRGQFRGQQQY-LTHYHPNLRNHEIFSYANNKNVLQAPQ 75
           S SS + +++ A   E A YV+R  +  ++ Y   HYHP LRNHE  SY NN+N LQ P 
Sbjct: 222 STSSSHQETEVAN--EQAQYVNRRNYNQRESYQANHYHPGLRNHENLSYGNNRNTLQPPS 281

Query: 76  GFNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIA 135
           GFN   +     LED++  F+ E+RSR    E+ +  I + V + G  +++LEVQISQ+A
Sbjct: 282 GFNTQNSDGKLPLEDILGTFISETRSRFNKDESRLDNIETHVSNMGATMKNLEVQISQLA 341

Query: 136 ISIHTMQKEKCPSCLEKNPKEECKAI 161
            S+ + QK K PS +E NPKE CKA+
Sbjct: 342 TSMKSQQKGKFPSDIEINPKEHCKAV 365

BLAST of HG10017594 vs. NCBI nr
Match: XP_022893883.1 (uncharacterized protein LOC111408348 [Olea europaea var. sylvestris])

HSP 1 Score: 107.8 bits (268), Expect = 9.3e-20
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 0

Query: 24  SKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAK 83
           +++A+++ + NY  RG ++       HYHP LRNHE  SY NN+N LQ P GFN   +  
Sbjct: 94  NEQAQYVNSRNYNQRGSYQA-----NHYHPALRNHENLSYGNNRNTLQPPPGFNTQNSDG 153

Query: 84  ISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKE 143
              LED++  F+ E+RSR    E+ +  I + V + G  +++LEVQI Q+A SI + QK 
Sbjct: 154 KPPLEDILGTFISETRSRFNKDESRLDNIETHVSNMGATMKNLEVQIDQLATSIKSQQKG 213

Query: 144 KCPSCLEKNPKEECKAI 161
           K PS  E NPKE CKA+
Sbjct: 214 KFPSDTEVNPKEHCKAV 225

BLAST of HG10017594 vs. NCBI nr
Match: XP_022883717.1 (uncharacterized protein LOC111400543 [Olea europaea var. sylvestris])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 0

Query: 24  SKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAK 83
           +++A+++ + NY  RG ++       HYHP LRNHE  SY NN+N LQ P GFN   +  
Sbjct: 199 NEQAQYVNSRNYTQRGSYQA-----NHYHPGLRNHENLSYGNNRNTLQPPPGFNTQNSDG 258

Query: 84  ISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKE 143
              LED++  F+ E+RSR    E+ +  I + V + G  +++LEVQI Q+A S+ + QK 
Sbjct: 259 KPPLEDILGTFISETRSRFNKDESRLGKIETHVSNMGATMKNLEVQIGQLATSMKSQQKG 318

Query: 144 KCPSCLEKNPKEECKAI 161
           K PS  E NPKE CKA+
Sbjct: 319 KFPSDTEVNPKEHCKAV 330

BLAST of HG10017594 vs. ExPASy TrEMBL
Match: A0A2P5BPI6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_313500 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.7e-17
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 0

Query: 49  THYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAKISSLEDLMIDFVKESRSRTTTLENS 108
           THY+P LRNHE FSY N +NVLQ P GFN   + K SSLEDL+  F+ E+R +    E  
Sbjct: 7   THYYPGLRNHENFSYGNTRNVLQPPPGFNPPVSEKKSSLEDLLSTFIVETRRKFNKDEAR 66

Query: 109 VQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSCLEKNPKEECKAIS 162
           +  I +   +    ++SLEVQI Q+A SI   Q  K PS  E NPK+ CKAI+
Sbjct: 67  LDNIETHCNNMNATMKSLEVQIGQLANSIKGQQSGKFPSDTETNPKDHCKAIT 119

BLAST of HG10017594 vs. ExPASy TrEMBL
Match: A0A2I4FP56 (uncharacterized protein LOC109000837 OS=Juglans regia OX=51240 GN=LOC109000837 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16
Identity = 56/148 (37.84%), Postives = 83/148 (56.08%), Query Frame = 0

Query: 16  SISSGNGKSKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVL--QAP 75
           +I S     ++ +++   NY  RG          H+HP LRNHE  SY N KNVL  Q P
Sbjct: 154 TIPSNEASQEQVQYINNQNYNYRG-----NPMPNHFHPGLRNHENLSYGNTKNVLQPQPP 213

Query: 76  QGFNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQI 135
            GFN   + K  SLE+ MI FV+E+ ++    ++ +  I +   +   AI+++EVQI Q+
Sbjct: 214 SGFNSQSSKKKMSLENAMISFVEETNAKFKETDSQLDNIETHCSNMRAAIKNIEVQIGQL 273

Query: 136 AISIHTMQKEKCPSCLEKNPKEECKAIS 162
           A +I+  Q+E  PS  E NP E+ KAI+
Sbjct: 274 ATTINAQQRETFPSNTEVNPNEQSKAIT 296

BLAST of HG10017594 vs. ExPASy TrEMBL
Match: A0A6P9DWY0 (uncharacterized protein LOC118344026 OS=Juglans regia OX=51240 GN=LOC118344026 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 0

Query: 16  SISSGNGKSKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQG 75
           ++ S     ++ +++   NY  RG          +YH  LRNHE  SY N KNVLQ   G
Sbjct: 119 TVPSNEASQEQVQYINNRNYNYRG-----NPMPNYYHLGLRNHENLSYKNTKNVLQPHPG 178

Query: 76  FNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAI 135
           F+   + K  SLED M+ FV+E+ +R    ++ +  I +   + G AI+++EVQI Q+A 
Sbjct: 179 FDSQPSEKKISLEDAMVSFVEETNTRFKKTDSRLDNIETHCSNMGAAIKNIEVQIGQLAT 238

Query: 136 SIHTMQKEKCPSCLEKNPKEECKAIS 162
           +I+  Q+   PS  E NP+E+CKAI+
Sbjct: 239 TINAQQRGTFPSNTEVNPREQCKAIT 259

BLAST of HG10017594 vs. ExPASy TrEMBL
Match: A0A2P5A3N0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_372170 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = 0

Query: 49  THYHPNLRNHEIFSYANNKNVLQAPQGFNGLGNAKISSLEDLMIDFVKESRSRTTTLENS 108
           THYH   RNHE FSYANNKNVLQ P G N     K  SLED++  F+ E+R R    E  
Sbjct: 7   THYHLGFRNHENFSYANNKNVLQPPPGLNQPVEEKKPSLEDILSTFIMETRGRFNKDEAL 66

Query: 109 VQTIASTVQSQGKAIQSLEVQISQIAISIHTMQKEKCPSCLEKNPKEECKAIS 162
           +  I +   +    ++SLEVQI ++A SI      K PS  E NPK+ CKAI+
Sbjct: 67  LDNIETHCNNMNATMKSLEVQIGELANSIKGQISRKFPSDTETNPKDHCKAIT 119

BLAST of HG10017594 vs. ExPASy TrEMBL
Match: A0A2P5AMA4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_346970 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 59/146 (40.41%), Postives = 79/146 (54.11%), Query Frame = 0

Query: 16  SISSGNGKSKRARWLETANYVDRGQFRGQQQYLTHYHPNLRNHEIFSYANNKNVLQAPQG 75
           S  +  G  ++  +L   N+  RG         THYHP LRNHE FSYANN+NVLQ P G
Sbjct: 61  SFGNDGGDLEQVNYLNNWNFNYRGN-NMSNNLPTHYHPVLRNHENFSYANNRNVLQPPLG 120

Query: 76  FNGLGNAKISSLEDLMIDFVKESRSRTTTLENSVQTIASTVQSQGKAIQSLEVQISQIAI 135
           FN     K  SL+D++  F+ E++ R    E  +  I +   +    ++SLEVQI Q+A 
Sbjct: 121 FNQPVAEKKPSLKDILSTFIMETKGRFNKDEARIDNIETHCNNINATMKSLEVQIRQLAN 180

Query: 136 SIHTMQKEKCPSCLEKNPKEECKAIS 162
           SI      K PS  E NPK+ CK I+
Sbjct: 181 SIKGQIFRKFPSDTETNPKDHCKTIT 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_217833153.16.2e-4878.20retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
WP_217833148.14.6e-2763.64hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
XP_022868533.14.2e-2043.84uncharacterized protein LOC111388104 [Olea europaea var. sylvestris][more]
XP_022893883.19.3e-2043.07uncharacterized protein LOC111408348 [Olea europaea var. sylvestris][more]
XP_022883717.11.2e-1942.34uncharacterized protein LOC111400543 [Olea europaea var. sylvestris][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5BPI64.7e-1748.67Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_313500 PE=4 SV... [more]
A0A2I4FP568.8e-1637.84uncharacterized protein LOC109000837 OS=Juglans regia OX=51240 GN=LOC109000837 P... [more]
A0A6P9DWY08.8e-1636.99uncharacterized protein LOC118344026 OS=Juglans regia OX=51240 GN=LOC118344026 P... [more]
A0A2P5A3N02.0e-1546.90Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_372170 PE... [more]
A0A2P5AMA42.0e-1540.41Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_346970 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017594.1HG10017594.1mRNA