HG10017538 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017538
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein 5, chloroplastic
Location	Chr03: 15390300 .. 15391803 (-)
RNA-Seq Expression	HG10017538
Synteny	HG10017538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCTCTTTTCTCCGTCGCCGACGCCGTCGCCATCGCCGTCATGTTTTCCAGCGACTTCTGCCGCCTTGAGTAAGTCTCTCTTTTTGAACATTCCTTTCCGCGCCTCTGTTCGACGGGATCGAATGAATGTTTTTGTCTAATTTTGTATCTTCATTTCTCTTTCTACTTCATTGTTTGCTGTATGATTTATTCAAATGGGCAATTTCATTTCCTCGAACTGGAGAAAAACTATTTGTTGTGCTTGAAAGAATTTCCTCGCAGTCATTTGTTTGTCAGGCATTTTGTCAACAGTTGGTATCTGTATGTTGAGACTGTCGATTTTAAGCTTCTCATTTGATGTGCACTGGATCTCACTTGCCTGAATGTGTTTTGAGTTCTGTATCTAGTGTGTTATATGCTGACTTTTCTTTTACTTGTGCATCATCCTCAATTTGATATGTAGTTTACAAGTTTCCTAGTCTTGAAATACAGTTGAATTTCATCGAAGAGATATTGTTGTGAGTGAATTTCATACTTTCTATATGTTGAATATTAATTTGATTCATGAAATATCAAATAAGAGAAATTAACATTATAAGGATCCCTAGTACCCCACGGTGTGATTAATAACATATTAAAAAAATGAACTCAATCAAAAGCCCTTGGAATAAATTACAGTGTATTTAATCTTTGGTTATATTACAAGCTTTTTAAGGTCTCTAAACGAGCTATTTAATCTTGGATTATATTAATAAGGAAGTAATACAAGCTTGTTGGCGAAACTTTTAAACTTGTGTCTACTAACTAATGGTCCATTAATTTTTAAGTGTCTAATGAGTCTCTAAACTTTTAATATTGTGTATGGTAGATCTCCGAGCTTTAAACAATATCTAGTAGATCTTTAAAATATTAATCTTACACTATCAACTTACATCTCGTATATCTGTTTTAGGATCTATTAGACACTTTTAAAATTAAGAGATCTACTGGACACAATTCTAAAAGCTTAGAGACCAAATATATATATATCTTGGCTTTAATTTGAATGATTATTTCCTTGCATTTTATGTATCTCAGCCCAATTTCCACTTCTTTATTGTGGTCTCCATTTCAGGTTCTATGTTGCTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAATACAGTGTCGTTAGTTGTCAAAGCTGTGTCTGAGATTGATGGTACGGGAGAAACTGACAGTAGTGAATCGCAGCCGCCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAGCAGAAGGCGAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

mRNA sequence

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCTCTTTTCTCCGTCGCCGACGCCGTCGCCATCGCCGTCATGTTTTCCAGCGACTTCTGCCGCCTTGAGTTCTATGTTGCTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAATACAGTGTCGTTAGTTGTCAAAGCTGTGTCTGAGATTGATGGTACGGGAGAAACTGACAGTAGTGAATCGCAGCCGCCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAGCAGAAGGCGAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Coding sequence (CDS)

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCTCTTTTCTCCGTCGCCGACGCCGTCGCCATCGCCGTCATGTTTTCCAGCGACTTCTGCCGCCTTGAGTTCTATGTTGCTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAATACAGTGTCGTTAGTTGTCAAAGCTGTGTCTGAGATTGATGGTACGGGAGAAACTGACAGTAGTGAATCGCAGCCGCCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAGCAGAAGGCGAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Protein sequence

MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Homology

[Close]

BLAST of HG10017538 vs. NCBI nr
Match: XP_022949869.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 5.4e-67
Identity = 143/159 (89.94%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLS SLHS  FSPSP+PSPSPSCFPA  AAL+SMLLMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENTVS +VKA SEID TGETDS+E +PPAEAKKEDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of HG10017538 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 3.5e-66
Identity = 142/159 (89.31%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLS SLHS  FSPSP+PSPSPSCFP   AAL+SMLLMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENTVS  VKA SEID TGETDS+E +P AEAKKEDVPVDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of HG10017538 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 9.6e-64
Identity = 141/158 (89.24%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 2   AFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLR 61
           +FLLCSNPLSTSLHSF F  SP PSPSPSCFPATSAA S MLLMKP GFQPKHFNGVRL 
Sbjct: 3   SFLLCSNPLSTSLHSFPF--SPPPSPSPSCFPATSAAPSPMLLMKPIGFQPKHFNGVRLG 62

Query: 62  NPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA 121
            PSFVEN  SL+VKA SEID  G+TDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 63  KPSFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA 122

Query: 122 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 158

[Close]

BLAST of HG10017538 vs. NCBI nr
Match: KAG7013851.1 (50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.5 bits (641), Expect = 4.8e-63
Identity = 140/159 (88.05%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLS SLHS  FSPS  PSPSPSCFPA  A L+SMLLMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPS--PSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENTVS +VKA SEID TGETDS+E +P AEAKKEDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of HG10017538 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 140/159 (88.05%), Postives = 146/159 (91.82%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLSTSL+S  FSPS  PSPSPSCFP TSAA SS+LLM+P GFQPK FNGVRL
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPS--PSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRL 60

Query: 61  RNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQK 120
           RN SFVENT SL+VKA SEIDGTGETDS+E QPPAEAKKEDVPVDKLPLESKLQERLEQK
Sbjct: 61  RNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
            RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 TRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of HG10017538 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 79/160 (49.38%), Postives = 91/160 (56.88%), Query Frame = 0


Query: 4   LLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNP 63
           LLC N L  SL S   S S     SPS         S +L +KP   + K  N V L   
Sbjct: 3   LLCFNSL-PSLSSLSSSSSSRLLQSPS-------FASPVLSLKPNAVESK--NRVSLSAY 62

Query: 64  SFVENTVSLVVK-AVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQER---LEQ 123
           S   +   +VVK A S +DG  E +S E      A    VPVDKLPLESK  +    LE 
Sbjct: 63  SLNSSHGRIVVKAAASGVDG-AEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLEL 122

Query: 124 KARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 RLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of HG10017538 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-13
Identity = 65/158 (41.14%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 4   LLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNP 63
           LLC N  +T+  +   S  P P+ +P         +S + +  PT        G R+  P
Sbjct: 3   LLCFNSFTTTPVTSSSSLFPHPTANP---------ISRVRIGLPTNC----LKGFRILTP 62

Query: 64  SFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKED--VPVDKLPLESKLQERLEQKA 123
              +   + +   ++      +++ ++    +E+KKE   V VDKLPLESKL+ER E+  
Sbjct: 63  IVQKPRKNSIF--IASAAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERML 122

Query: 124 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Sbjct: 123 KMKLAKKIRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV 145

[Close]

BLAST of HG10017538 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 6.1e-13
Identity = 65/149 (43.62%), Postives = 86/149 (57.72%), Query Frame = 0


Query: 18  LFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVS----LV 77
           L SP  + S  P   P TS A+SS      + F  K  N      PSF +  V+    + 
Sbjct: 3   LLSPLLSLSSVP---PITSIAVSS------SSFPIKLQNVSVALLPSFGQRLVAHGPVIA 62

Query: 78  VK---AVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIR 137
            K    V+ +    E  + E    ++ ++ ++ V  LPLESKLQ +LEQK +MK+AKKIR
Sbjct: 63  QKRGTVVAMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIR 122

Query: 138 LRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           LRR RL++KR LRK+G WPPSKMKKLKNV
Sbjct: 123 LRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of HG10017538 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.6e-67
Identity = 143/159 (89.94%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLS SLHS  FSPSP+PSPSPSCFPA  AAL+SMLLMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENTVS +VKA SEID TGETDS+E +PPAEAKKEDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of HG10017538 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.1e-63
Identity = 140/159 (88.05%), Postives = 146/159 (91.82%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLSTSL+S  FSPS  PSPSPSCFP TSAA SS+LLM+P GFQPK FNGVRL
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPS--PSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRL 60

Query: 61  RNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQK 120
           RN SFVENT SL+VKA SEIDGTGETDS+E QPPAEAKKEDVPVDKLPLESKLQERLEQK
Sbjct: 61  RNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
            RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 TRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of HG10017538 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 138/159 (86.79%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLS SLHS   SPS  PSPSPSCFP   +AL+SM LMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTLSPS--PSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQK 120
           RNPSFVENTVS +VKA SEID TGETDS+E +P AEAKKEDVPVDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           ARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of HG10017538 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57
Identity = 133/158 (84.18%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 2   AFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLR 61
           +FLL SNPLSTS H        + SPSPSCFP TSA  SSMLLMKP GFQPKHFNGVRLR
Sbjct: 3   SFLLSSNPLSTSFHF-------STSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 62

Query: 62  NPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA 121
           N SFVENT SLVVKA SE D TGETDSS+ QP AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 63  NHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122

Query: 122 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of HG10017538 vs. ExPASy TrEMBL
Match: A0A1S3C2X0 (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.3e-54
Identity = 128/158 (81.01%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 2   AFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLR 61
           +FLLCSNPLSTS H     P         CFP TSA  SSMLLMKP GFQPK FNGVRLR
Sbjct: 3   SFLLCSNPLSTSFHFSTLHP---------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLR 62

Query: 62  NPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA 121
           N  FVENT SLVVKA SE D TGE DSSE QP AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 63  NHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122

Query: 122 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of HG10017538 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15
Identity = 79/160 (49.38%), Postives = 91/160 (56.88%), Query Frame = 0


Query: 4   LLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNP 63
           LLC N L  SL S   S S     SPS         S +L +KP   + K  N V L   
Sbjct: 3   LLCFNSL-PSLSSLSSSSSSRLLQSPS-------FASPVLSLKPNAVESK--NRVSLSAY 62

Query: 64  SFVENTVSLVVK-AVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLESKLQER---LEQ 123
           S   +   +VVK A S +DG  E +S E      A    VPVDKLPLESK  +    LE 
Sbjct: 63  SLNSSHGRIVVKAAASGVDG-AEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLEL 122

Query: 124 KARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 160
           + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 RLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:

BLAST of HG10017538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949869.1	5.4e-67	89.94	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]	[more]
XP_023543496.1	3.5e-66	89.31	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038881132.1	9.6e-64	89.24	50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r...	[more]
KAG7013851.1	4.8e-63	88.05	50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022154476.1	1.1e-62	88.05	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]

BLAST of HG10017538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LER7	1.9e-14	49.38	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ...	[more]
P11891	2.1e-13	41.14	50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV...	[more]
P27684	6.1e-13	43.62	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]

BLAST of HG10017538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GE62	2.6e-67	89.94	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1DNT9	5.1e-63	88.05	50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1HS41	1.5e-62	86.79	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A0A0L3F4	1.4e-57	84.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
A0A1S3C2X0	3.3e-54	81.01	50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P...	[more]

BLAST of HG10017538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56910.1	1.4e-15	49.38	plastid-specific 50S ribosomal protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..159
None	No IPR available	PANTHER	PTHR34678:SF1	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 1..159
IPR040307	50S ribosomal protein 5, chloroplastic	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 1..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017538.1	HG10017538.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome