HG10017512 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017512
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionexosome complex component RRP4 homolog
LocationChr03: 15090275 .. 15093536 (+)
RNA-Seq ExpressionHG10017512
SyntenyHG10017512
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGTTTACAGATTCCCTTGAATCATACCCAGAAGATTCGGCTTCAGAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTATATAATTCCTCACTATTTTTATATAATAGATGCCTGGATTGTGTAATTGCCAGGGGATTATATGCATTGAGATATAATTGAAATTTGTGTACAGGGGACATGGGACCCTTGACTTGGATGGAGACGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTGCGTGCCTTACGTGCCAGGTTGTCCATGAAACTTTGCAGTTTGGTTTTTCTTGATGATAGTTTAAAGTTTCCCTTTCTTTGGTCTATTGCTATGATATCTTTTATGATTTATATAATTGTCTGTACTGGTTTTAGATATAAACCGGAGGTTGGTGATATTGTTGTGGGACGTGTTACTGAGGTAAATTCAAATGCTGTTTATTTAGTTTTTTTGGTTTTACATAAATGTAACATAGAGACGTTGGTGGGTAAAACAGACAAGAAAAGCTTATTCGGGAGTCATGGTTATGATGTTGTAAATAGGAAAAATGTGTTAAAATGCCTCCCCCACGCCATTATTTTCATATCATTTGATACGATCTTATTCAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAATCTGCCTGATGGTATTCAGGTATTGGAGTATTCCCTTTTGTTATGAAAATAATGGTGCATACTCTTGCACCAGATGGTGAATTAGCTATGCCTTCCACTGAACTTCATAGAAATTTTACTGCAAAATTGCTGCAACTGATCCTCTCTCTCTCTCTCTCTCACGAGTGGTTGCATTTTTTGTAACCCTGGACTAATTGTATTGTTTTTGTTTCTAGAGGAGGCGAACTGCCATTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGTGAGTTTTATAGCTTTTACTTTCACCTATCAACGTTAGAAAGAATATCTGCTACCAAGTTTCTCACGTGTCATACATATAAGGTTTTCTCCTACATTTTTACAATTTTGAAGAATTAAAAATAATTGAGGTGCGTCCAAGCTAGCCTGGACACAAATAGATGTATATATAAATCTCTCTTACATAGGACGTTATCATGGGTACCATAGAGTTAGAACCAAAAATTTTTAAGTTTTTGTTAGAACCAAAATTTTTTAATTTTTTCCTTCACCATTAGGCCAAAGCATGATGGTTATGAACAATGTCAGTCAACTCACAAGCCCTTTGTAAAATCTATAGTGCATAGGCTCCGACACATTAGATAGATAGATGCATCTTTGGCACCTCGCCTGGTTCTGGCCAGGTGCCTTAGCTCAAGTGCCTTGTTGCTCTTCACCAAGGTCCCAAAATTTTCTTCACATTCTAATGTTGCTGTTGCCTATAGGCGTCTTAACTCAAGTGTCTATTTGTGCCTCTTGCCCTCTAGTGCCATTTTAAAAAAAAATTCATTTACTTTTCTCTCCTTTTACTTTATGCAAGTCAGCAAGTGATGCAATATATATCCATTATTGCTTCTTTTCTCACGTGACTCAGACTCAAGTCAAGTCTTGTGCTTGCACAAAGGCTTGAAGAGATGTACTTTGGCACTTGAGTTTACCGTGCACTATTATAAATAAACACCACTCTCATCAGTTATTGTTCATGCATAATTTTCCATTTAAGAAAAAATAACATCACCACATCTTTTCTCAGGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGGTAAAACAAATCTCTTTCTTAAGCTTCTGGATGTCGATGTAAACAAAATAAGCTTTAGAATCAAAATTTCCTAGTCTCCCACATCTTCACTGGTTTCTTAGGATTCCATAGAAAGATTCTTGATAGCATGTGAATACTGATTTATACACGAATCTTCTGGGGAAATTCTAATGGTTAAAACGAATTGTGGAGATGATTATACAGTTGTTGCACAGGTATAAGGGAGGAAGCCAGGAAGGGATGTCATCAAGGTGAAAAGACGGATGGGTGGAAATATTTATTGATTGTAAAGAGGAGCTAGCCGATGGGTGGGAAGAAGAAATGTAAAACATATTAATAGAAAAGTGAGTGTAGAGAATGCAAAAAAGAAGAGAGAGAGAGGGGGGGGGGGGGATTAACATACCTGGTCCCTATACTTTGAATATGTTTTCAAAATTCATAGTAAAAGTTTTCATACAAGAAAATACAGTGTGTGAATATGTTTTCAAATTTTATAGTAAAAATGCTAATAGATACAAAAAGTGTTCTAAAAAATAATAATAAACTAGCCGTGGGGACTAAATTCAAGATTTATTGTGAGTACAAGGACAAAAATTGGACAACATGAACTAAAATTGAACAAACTTCAAAGTATAAAGACCAAAATGGTATTTTAACAAAAACAAAAAAAAAAAATCCTCTCCAAAACCATGAATGACTATAATATAATAGAACGATAGAAATTATGTCTAATTGTTACATTTTTCTTTTTTACTCAGTATGATAAGTTCAAAATCTTGGAGGGTACCTATATTTGAATATTTCTTTGTCCTATCAACTTTTCTGGCATCATCTCATCTTGTTTCTTCATGACTGTTGTGAATATGATTTGTGCATGTGTATATCCAGCTTGAACGTGGTCAGCTGCTCACAGTTCCACCATATCTAGTAAAGAGACGCAAACAACACTTTCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGCTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATATGATTATAGAGGATCAAGTTAATAAATCTGAGCAGAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGGAAGAAAGAGTATATACTCCATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCGATTCGAGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAACTCATAATGGAGATAGTTAGTCTAAGCATTTCTATGAACATCGATGTGCATGAAATGCTCGGTGCAGAGTTCTGCGTTCTCACGGTGGAAAAAGAGGTCGAACGACGTACTTCGAGTAAGAAGAGGGGGTGA

mRNA sequence

ATGAGAGGTTTACAGATTCCCTTGAATCATACCCAGAAGATTCGGCTTCAGAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGGATGGAGACGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTGCGTGCCTTACGTGCCAGATATAAACCGGAGGTTGGTGATATTGTTGTGGGACGTGTTACTGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAATCTGCCTGATGGTATTCAGAGGAGGCGAACTGCCATTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGCTGCTCACAGTTCCACCATATCTAGTAAAGAGACGCAAACAACACTTTCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGCTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATATGATTATAGAGGATCAAGTTAATAAATCTGAGCAGAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGGAAGAAAGAGTATATACTCCATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCGATTCGAGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAACTCATAATGGAGATAGTTAGTCTAAGCATTTCTATGAACATCGATGTGCATGAAATGCTCGGTGCAGAGTTCTGCGTTCTCACGGTGGAAAAAGAGGTCGAACGACGTACTTCGAGTAAGAAGAGGGGGTGA

Coding sequence (CDS)

ATGAGAGGTTTACAGATTCCCTTGAATCATACCCAGAAGATTCGGCTTCAGAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGGATGGAGACGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTGCGTGCCTTACGTGCCAGATATAAACCGGAGGTTGGTGATATTGTTGTGGGACGTGTTACTGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAATCTGCCTGATGGTATTCAGAGGAGGCGAACTGCCATTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGCTGCTCACAGTTCCACCATATCTAGTAAAGAGACGCAAACAACACTTTCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGCTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATATGATTATAGAGGATCAAGTTAATAAATCTGAGCAGAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGGAAGAAAGAGTATATACTCCATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCGATTCGAGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAACTCATAATGGAGATAGTTAGTCTAAGCATTTCTATGAACATCGATGTGCATGAAATGCTCGGTGCAGAGTTCTGCGTTCTCACGGTGGAAAAAGAGGTCGAACGACGTACTTCGAGTAAGAAGAGGGGGTGA

Protein sequence

MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDVHEMLGAEFCVLTVEKEVERRTSSKKRG
Homology
[Close]
BLAST of HG10017512 vs. NCBI nr
Match: XP_038882865.1 (exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882866.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882867.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882868.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 613.2 bits (1580), Expect = 1.3e-171
Identity = 308/327 (94.19%), Postives = 321/327 (98.17%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MRGLQI LNHTQKIRLQRA+ERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQISLNHTQKIRLQRAQERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+V+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVIATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LLTVP YLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDM+I+DQ+NKSEQKG 
Sbjct: 181 LLTVPSYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMIDDQINKSEQKGP 240

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEGTF NQV++RVYTPLETRQNICRTANAIRVLSILGFI+TVE+IMEIVSLSISMNIDV
Sbjct: 241 KFEGTFENQVQQRVYTPLETRQNICRTANAIRVLSILGFIMTVEVIMEIVSLSISMNIDV 300

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKKRG 328
           HEMLG+EFCVLT EKEVERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRTSSKKRG 327

[Close]
BLAST of HG10017512 vs. NCBI nr
Match: XP_038882864.1 (exosome complex component RRP4 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 613.2 bits (1580), Expect = 1.3e-171
Identity = 308/327 (94.19%), Postives = 321/327 (98.17%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MRGLQI LNHTQKIRLQRA+ERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDL+
Sbjct: 38  MRGLQISLNHTQKIRLQRAQERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 97

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+V+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 98  GEVIATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 157

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 158 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 217

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LLTVP YLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDM+I+DQ+NKSEQKG 
Sbjct: 218 LLTVPSYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMIDDQINKSEQKGP 277

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEGTF NQV++RVYTPLETRQNICRTANAIRVLSILGFI+TVE+IMEIVSLSISMNIDV
Sbjct: 278 KFEGTFENQVQQRVYTPLETRQNICRTANAIRVLSILGFIMTVEVIMEIVSLSISMNIDV 337

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKKRG 328
           HEMLG+EFCVLT EKEVERRTSSKKRG
Sbjct: 338 HEMLGSEFCVLTAEKEVERRTSSKKRG 364

[Close]
BLAST of HG10017512 vs. NCBI nr
Match: KAG6606437.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 599.0 bits (1543), Expect = 2.5e-167
Identity = 297/327 (90.83%), Postives = 316/327 (96.64%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LLTV PYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEG+FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKKRG 328
           HEMLG+EFCVLT EKE ERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of HG10017512 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 597.4 bits (1539), Expect = 7.3e-167
Identity = 297/327 (90.83%), Postives = 315/327 (96.33%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LLTV PYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEG+FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKKRG 328
           HEMLG+EFCVLT EKE ERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of HG10017512 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 597.0 bits (1538), Expect = 9.5e-167
Identity = 296/327 (90.52%), Postives = 314/327 (96.02%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LLTV PYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEG FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSL IS+NIDV
Sbjct: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 300

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKKRG 328
           HEMLG+EFCVLT EKE ERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of HG10017512 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.2e-119
Identity = 216/327 (66.06%), Postives = 269/327 (82.26%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MR LQ+PL+ TQK+R +RA ERL+SLSS ANSDASVIV D+IP+N++D  LKGHGT ++D
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT++DELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 241 SKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNID 300
           S   G      +E+ + PLETRQ ICR  NAIRVLS LGF +T+E+IME V+LS S NID
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGAEFCVLTVEKEVERRTSSKKR 327
           +H+MLG+EF V+  E E ERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]
BLAST of HG10017512 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.8e-47
Identity = 108/257 (42.02%), Postives = 159/257 (61.87%), Query Frame = 0 

Query: 51  LKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD 110
           ++GHGT   DG + A++ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 INYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQAR 170
           I   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+    DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 SQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIE 230
           S KYGKL  G  L VPP LV R K H + L   G+D+IL  NG++W+ +H + +   +  
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQHSSV-- 250

Query: 231 DQVNKSEQKGSKFEGTFGNQVEE-RVYTPLE-TRQNICRTANAIRVL-----SILGFIIT 290
             + + E++ S  E  + N+ +E   YT L  +R +IC    A R L     SI  F  +
Sbjct: 251 -SITRLEEEAS--ESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYES 310

Query: 291 VELIMEIVSLSISMNID 300
             +   +  L++  N+D
Sbjct: 311 SLVFSNLQDLTVPKNMD 321

[Close]
BLAST of HG10017512 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.3e-46
Identity = 106/214 (49.53%), Postives = 140/214 (65.42%), Query Frame = 0 

Query: 13  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVE 72
           ++RL  AR+ L     + +    V+  DTI    + G ++GHGT   +  ++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ V P LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKED 226
           +K HFH L   G  +ILG NGFIW+    + KED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

[Close]
BLAST of HG10017512 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.9e-46
Identity = 107/213 (50.23%), Postives = 140/213 (65.73%), Query Frame = 0 

Query: 13  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVE 72
           ++RL +AR+ L     + +    V+  DTI    + G ++GHGT   +  ++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ V P LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI---GEHVD 222
           +K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

[Close]
BLAST of HG10017512 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 1.9e-45
Identity = 106/214 (49.53%), Postives = 139/214 (64.95%), Query Frame = 0 

Query: 13  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVE 72
           ++RL  AR+ L     +      V+  DTI    + G ++GHGT   +  ++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ V P LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKED 226
           +K HFH L   G  +ILG NGFIWI    + KE+
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKEE 214

[Close]
BLAST of HG10017512 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 3.5e-167
Identity = 297/327 (90.83%), Postives = 315/327 (96.33%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LLTV PYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEG+FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKKRG 328
           HEMLG+EFCVLT EKE ERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of HG10017512 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 594.7 bits (1532), Expect = 2.3e-166
Identity = 295/325 (90.77%), Postives = 314/325 (96.62%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL+
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LLTV PYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEG+FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKK 326
           HEMLG+EFCVLT EKE ERRTSSKK
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]
BLAST of HG10017512 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 593.2 bits (1528), Expect = 6.6e-166
Identity = 299/327 (91.44%), Postives = 313/327 (95.72%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MR LQI LN TQKIRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDL+
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LLTV PYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDP EDM+IEDQVNKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEGTFGNQV+ERVYTPLETRQNICRTANAIRVLS LGFI+TVE+IME VSLS S+NI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKKRG 328
           HEMLG+EFCVLT EKE ERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of HG10017512 vs. ExPASy TrEMBL
Match: A0A6J1HVC7 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467017 PE=4 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 1.3e-161
Identity = 293/327 (89.60%), Postives = 311/327 (95.11%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MR LQI LN TQ+IRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDL+
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+VVATICGVVER+NKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRR+TA DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGK+ERGQ
Sbjct: 121 LSSMNLPDGIQRRQTADDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKVERGQ 180

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LLTV PYLVKRRKQHFHHLEQYGIDLI GCNGFI IGE VDP EDM+IEDQVNKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIRIGERVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEGTFGNQV+ERVYTPLETRQNICRTANAIRVLS LGFI+TVE+IME VSLS+S+NI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSLSLNINV 300

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKKRG 328
           HEMLG+EFCVLT EKE ERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]
BLAST of HG10017512 vs. ExPASy TrEMBL
Match: A0A1S3B5H2 (exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 573.9 bits (1478), Expect = 4.2e-160
Identity = 289/327 (88.38%), Postives = 309/327 (94.50%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MRGLQ+ LNHTQKIRL+RA+ERL+SLSSK NSDASV+VADTIPLNYEDGVLKGHGTLDL+
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+VVA+ICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 LLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGS 240
           LL V PYL+KRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPKED +IED V+K EQK  
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 254

Query: 241 KFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV 300
           KFEGT      + VYTPLETRQNICRTANAIRVLS LGFI+TVE+IMEIV+LSIS+NIDV
Sbjct: 255 KFEGTV-----QEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGAEFCVLTVEKEVERRTSSKKRG 328
           HEMLG+EFCVLT EKEVERR+SSKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]
BLAST of HG10017512 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 431.0 bits (1107), Expect = 8.4e-121
Identity = 216/327 (66.06%), Postives = 269/327 (82.26%), Query Frame = 0 

Query: 1   MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLD 60
           MR LQ+PL+ TQK+R +RA ERL+SLSS ANSDASVIV D+IP+N++D  LKGHGT ++D
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           G+++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT++DELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 241 SKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNID 300
           S   G      +E+ + PLETRQ ICR  NAIRVLS LGF +T+E+IME V+LS S NID
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGAEFCVLTVEKEVERRTSSKKR 327
           +H+MLG+EF V+  E E ERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

The following BLAST results are available for this feature:
BLAST of HG10017512 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882865.11.3e-17194.19exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882... [more]
XP_038882864.11.3e-17194.19exosome complex component RRP4 homolog isoform X1 [Benincasa hispida][more]
KAG6606437.12.5e-16790.83Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub... [more]
XP_022995373.17.3e-16790.83exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom... [more]
XP_023533481.19.5e-16790.52exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348... [more]
BLAST of HG10017512 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZVT71.2e-11966.06Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P... [more]
Q097047.8e-4742.02Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
Q2KID02.3e-4649.53Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1[more]
Q8VBV33.9e-4650.23Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1[more]
Q138681.9e-4549.53Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2[more]
BLAST of HG10017512 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K7S03.5e-16790.83exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909... [more]
A0A6J1EXY12.3e-16690.77exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A6J1HGD96.6e-16691.44exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1HVC71.3e-16189.60exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN... [more]
A0A1S3B5H24.2e-16088.38exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
BLAST of HG10017512 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03360.18.4e-12166.06ribosomal RNA processing 4 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..29
NoneNo IPR availableGENE3D2.40.50.140coord: 88..177
e-value: 9.3E-19
score: 69.2
NoneNo IPR availableGENE3D2.40.50.100coord: 36..87
e-value: 5.8E-17
score: 63.0
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 11..322
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 86..176
e-value: 3.37685E-33
score: 116.11
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 44..82
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 90..169
e-value: 1.4E-4
score: 31.2
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 179..219
e-value: 4.5E-12
score: 46.2
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 11..322
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 179..322
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 85..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017512.1HG10017512.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding