HG10017455 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017455
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Methyltransferase-related protein, putative
Location	Chr03: 14447029 .. 14447322 (+)
RNA-Seq Expression	HG10017455
Synteny	HG10017455

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTGTCGCCGGATACATCGCATGGAGATCCGCTTCTTCTTCTTCTTCCTCCTCCGACATCTTTCAGGCGACTGAAGCTTCCGATAAATCGCCACCGGAAAACGAGAATCGAAGCGTAACGGAGGACGGATTTGGAGTGAAGAGGACGATTCAGAAGGGATTCTGGACTTTCGTCGACATGGCGAGCGGAAGATTCCTGTGGAGGAATTTGAGAGCTTCGATTCTCAACAAAAACAATCAGGTTAAGGAAGATTGA

mRNA sequence

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTGTCGCCGGATACATCGCATGGAGATCCGCTTCTTCTTCTTCTTCCTCCTCCGACATCTTTCAGGCGACTGAAGCTTCCGATAAATCGCCACCGGAAAACGAGAATCGAAGCGTAACGGAGGACGGATTTGGAGTGAAGAGGACGATTCAGAAGGGATTCTGGACTTTCGTCGACATGGCGAGCGGAAGATTCCTGTGGAGGAATTTGAGAGCTTCGATTCTCAACAAAAACAATCAGGTTAAGGAAGATTGA

Coding sequence (CDS)

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTGTCGCCGGATACATCGCATGGAGATCCGCTTCTTCTTCTTCTTCCTCCTCCGACATCTTTCAGGCGACTGAAGCTTCCGATAAATCGCCACCGGAAAACGAGAATCGAAGCGTAACGGAGGACGGATTTGGAGTGAAGAGGACGATTCAGAAGGGATTCTGGACTTTCGTCGACATGGCGAGCGGAAGATTCCTGTGGAGGAATTTGAGAGCTTCGATTCTCAACAAAAACAATCAGGTTAAGGAAGATTGA

Protein sequence

MCPLRFILVFLSAIVAGYIAWRSASSSSSSSDIFQATEASDKSPPENENRSVTEDGFGVKRTIQKGFWTFVDMASGRFLWRNLRASILNKNNQVKED

Homology

[Close]

BLAST of HG10017455 vs. NCBI nr
Match: XP_038882347.1 (uncharacterized protein LOC120073608 [Benincasa hispida])

HSP 1 Score: 165.2 bits (417), Expect = 2.7e-37
Identity = 88/103 (85.44%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MCPLRFILVFLSAIVAGYIAWRSA------SSSSSSSDIFQATEASDKSPPENENRSVTE 60
           MCPLRFILVFLSAI+AGY AWRSA      SSSSSSSDIFQATE SDKSP E ENRSVTE
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSDIFQATEDSDKSPAETENRSVTE 60

Query: 61  DGFGVKRTIQKGFWTFVDMASGRFLWRNLRASILNKNNQVKED 98
           DGFG+KRTIQ GFWTFVDMASGRFLWRNL ASILNKN QVKED
Sbjct: 61  DGFGLKRTIQNGFWTFVDMASGRFLWRNLNASILNKNKQVKED 103

[Close]

BLAST of HG10017455 vs. NCBI nr
Match: XP_008441985.1 (PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo] >KAA0060106.1 uncharacterized protein E6C27_scaffold39G00250 [Cucumis melo var. makuwa] >TYK08421.1 uncharacterized protein E5676_scaffold654G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.1e-33
Identity = 80/103 (77.67%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MCPLRFILVFLSAIVAGYIAWRSA---------SSSSSSSDIFQATEASDKSPPENENRS 60
           MCPLRFILVFLSAI+AGY AWRSA         SSSSSSSDIFQATEA DKS P+NENRS
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  VTEDGFGVKRTIQKGFWTFVDMASGRFLWRNLRASILNKNNQV 95
           V EDGFGVKR ++ GFWTFVDMASGRFLWRN+  SILNKN QV
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 103

[Close]

BLAST of HG10017455 vs. NCBI nr
Match: KAE8649374.1 (hypothetical protein Csa_021566 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-30
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MCPLRFILVFLSAIVAGYIAWRSASSSSSSSDIFQATEASDKSPPENENRSVTEDGFGVK 60
          MCPLRFIL+FLSAI+AGY AWRSASSSSSSSDIFQATEASDKS PENENRS TED  GV 
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQATEASDKSAPENENRSGTEDRLGVN 60

Query: 61 RTIQKGFWTFVDMASGRFLWRNL 84
          R ++KGFWTFVDMASGRFLWRNL
Sbjct: 61 RMVEKGFWTFVDMASGRFLWRNL 83

[Close]

BLAST of HG10017455 vs. NCBI nr
Match: KAG6595503.1 (hypothetical protein SDJN03_12056, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027489.1 hypothetical protein SDJN02_11502, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-27
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MCPLRFILVFLSAIVAGYIAWRSA---SSSSSSSDIFQATEASDKSPPENENRSVTEDGF 60
          MCPLRFILVFLSAI+AGY+AWRSA   SSSSSSSD+F A E S+KSP E+ENR V EDGF
Sbjct: 1  MCPLRFILVFLSAILAGYVAWRSASSSSSSSSSSDLFPAVE-SEKSPLESENRRVEEDGF 60

Query: 61 GVKRTIQKGFWTFVDMASGRFLWRNLRASILNKNN 93
          G+K+ IQKGFW FVDMASGRFLWRNL +S L+K++
Sbjct: 61 GLKKMIQKGFWIFVDMASGRFLWRNLHSSALDKDH 94

[Close]

BLAST of HG10017455 vs. NCBI nr
Match: XP_022156242.1 (uncharacterized protein LOC111023174 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-19
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 1  MCPLRFILVFLSAIVAGYIAWRSASSSS-SSSDIFQATEASDKSPPENENRSVTEDGFGV 60
          MCPLRFILVFLSA++AGY+AWRSASSSS SSSD+     AS+KSPP +E R       GV
Sbjct: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDV-----ASEKSPPSDEKR-------GV 60

Query: 61 KRTIQKGFWTFVDMASGRFLWRNLRAS 87
            TIQ GFW FVDMASGR+LWRNL  S
Sbjct: 61 GTTIQNGFWIFVDMASGRYLWRNLNGS 75

[Close]

BLAST of HG10017455 vs. ExPASy TrEMBL
Match: A0A0A0KWN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.6e-37
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MCPLRFILVFLSAIVAGYIAWRSASSSSSSSDIFQATEASDKSPPENENRSVTEDGFGVK 60
          MCPLRFIL+FLSAI+AGY AWRSASSSSSSSDIFQATEASDKS PENENRS TED  GV 
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQATEASDKSAPENENRSGTEDRLGVN 60

Query: 61 RTIQKGFWTFVDMASGRFLWRNLRASILNKNNQVKED 98
          R ++KGFWTFVDMASGRFLWRNL  SILNKN QVKED
Sbjct: 61 RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKED 97

[Close]

BLAST of HG10017455 vs. ExPASy TrEMBL
Match: A0A5A7V0V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00360 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 80/103 (77.67%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MCPLRFILVFLSAIVAGYIAWRSA---------SSSSSSSDIFQATEASDKSPPENENRS 60
           MCPLRFILVFLSAI+AGY AWRSA         SSSSSSSDIFQATEA DKS P+NENRS
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  VTEDGFGVKRTIQKGFWTFVDMASGRFLWRNLRASILNKNNQV 95
           V EDGFGVKR ++ GFWTFVDMASGRFLWRN+  SILNKN QV
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 103

[Close]

BLAST of HG10017455 vs. ExPASy TrEMBL
Match: A0A1S3B5E4 (uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 80/103 (77.67%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MCPLRFILVFLSAIVAGYIAWRSA---------SSSSSSSDIFQATEASDKSPPENENRS 60
           MCPLRFILVFLSAI+AGY AWRSA         SSSSSSSDIFQATEA DKS P+NENRS
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  VTEDGFGVKRTIQKGFWTFVDMASGRFLWRNLRASILNKNNQV 95
           V EDGFGVKR ++ GFWTFVDMASGRFLWRN+  SILNKN QV
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 103

[Close]

BLAST of HG10017455 vs. ExPASy TrEMBL
Match: A0A6J1DRJ4 (uncharacterized protein LOC111023174 OS=Momordica charantia OX=3673 GN=LOC111023174 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.7e-19
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 1  MCPLRFILVFLSAIVAGYIAWRSASSSS-SSSDIFQATEASDKSPPENENRSVTEDGFGV 60
          MCPLRFILVFLSA++AGY+AWRSASSSS SSSD+     AS+KSPP +E R       GV
Sbjct: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDV-----ASEKSPPSDEKR-------GV 60

Query: 61 KRTIQKGFWTFVDMASGRFLWRNLRAS 87
            TIQ GFW FVDMASGR+LWRNL  S
Sbjct: 61 GTTIQNGFWIFVDMASGRYLWRNLNGS 75

[Close]

BLAST of HG10017455 vs. ExPASy TrEMBL
Match: A0A1S2XJS9 (uncharacterized protein LOC101509787 OS=Cicer arietinum OX=3827 GN=LOC101509787 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1  MCPLRFILVFLSAIVAGYIAWRSASSSSSSSDIFQATEASDKSPPENENRSVTEDGFGVK 60
          MCPLRFILVF SA++AGY AWR+ +SS          E       E+E  S  ++ F  K
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVNSSPK-------IELVSDDSVEDEKSSFKKENFDFK 60

Query: 61 RTIQKGFWTFVDMASGRFLWRNLRASILNKNNQVK 96
          + IQ GFW FVDMASGR+LWRNLR +  NK+ ++K
Sbjct: 61 KMIQNGFWVFVDMASGRYLWRNLRQT--NKDEELK 86

[Close]

BLAST of HG10017455 vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MCPLRFILVFLSAIVAGYIAWRSASSSSS--SSDIFQATEASDKSPPENENRSVTEDGFG 60
          MCPLRF+LVF SA++AGYIAWR+ +S+    S ++ QA EA +K             G  
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQA-EAKEK------------QGLD 60

Query: 61 VKRTIQKGFWTFVDMASGRFLWRNLR 85
           KR +  G WTFVDMASGR+LWRNL+
Sbjct: 61 FKRKMDNGLWTFVDMASGRYLWRNLK 73

[Close]

BLAST of HG10017455 vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 1  MCPLRFILVFLSAIVAGYIAWRSASSSSSSSDIFQATEASDKSPPE-NENRSVTEDGFGV 60
          MCP+RF+LVF SA++AGY AW++ SSS               SP E NE + +      +
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFD-----------SPDELNEKQEL-----NL 60

Query: 61 KRTIQKGFWTFVDMASGRFLWRNLR 85
          K+ ++ GFW FVDMASGR+LWRNL+
Sbjct: 61 KKKMENGFWVFVDMASGRYLWRNLK 69

[Close]

BLAST of HG10017455 vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein )

HSP 1 Score: 57.4 bits (137), Expect = 7.5e-09
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 1  MCPLRFILVFLSAIVAGYIAWRSASSSSSS--SDIFQATEASDKSPPENENRSVTEDGFG 60
          MCPLR IL+FLSA +AG+   +  +S+S     D F   E +D           +  GF 
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDD---------SVSGFS 60

Query: 61 -VKRTIQKGFWTFVDMASGRFLWRNL 84
           V   ++ GFWT VDMASGR+LW NL
Sbjct: 61 KVGMAMKSGFWTCVDMASGRYLWNNL 77

The following BLAST results are available for this feature:

BLAST of HG10017455 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882347.1	2.7e-37	85.44	uncharacterized protein LOC120073608 [Benincasa hispida]	[more]
XP_008441985.1	3.1e-33	77.67	PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo] >KAA0060106.1 unc...	[more]
KAE8649374.1	2.5e-30	86.75	hypothetical protein Csa_021566 [Cucumis sativus]	[more]
KAG6595503.1	2.0e-27	74.74	hypothetical protein SDJN03_12056, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022156242.1	9.8e-19	67.82	uncharacterized protein LOC111023174 [Momordica charantia]	[more]

BLAST of HG10017455 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017455 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWN3	6.6e-37	85.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1	[more]
A0A5A7V0V1	1.5e-33	77.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B5E4	1.5e-33	77.67	uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=...	[more]
A0A6J1DRJ4	4.7e-19	67.82	uncharacterized protein LOC111023174 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1S2XJS9	2.1e-14	50.53	uncharacterized protein LOC101509787 OS=Cicer arietinum OX=3827 GN=LOC101509787 ...	[more]

BLAST of HG10017455 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14602.1	1.8e-15	51.16	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G18150.1	1.3e-13	47.06	Methyltransferase-related protein	[more]
AT5G58375.1	7.5e-09	43.02	Methyltransferase-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..55
None	No IPR available	PANTHER	PTHR34132	EMB\|CAB87627.1-RELATED	coord: 1..91
None	No IPR available	PANTHER	PTHR34132:SF2	EMB\|CAB87627.1-RELATED	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017455.1	HG10017455.1	mRNA