HG10017415 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017415
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit alpha
Location	Chr03: 14090425 .. 14091904 (-)
RNA-Seq Expression	HG10017415
Synteny	HG10017415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAACAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGTGATAGAGAGTCAAAATTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGACGTATAATTTAGAGACTACGAAACAAAGATTCGAATGATTAGGTGAAGTAGTCTTTTCACGTGCAATATTCTTTTTTTGTAGGGATACAATTCGAAATAGAAAATTTCAAGAAACTTATTTCTTCCAATAAGTAGATTCGGAATTAAGGTAAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGGTAATTTGTTCCAATCCGAGACATAAACAAAGACAAGGATAATCTTTATAAAAAAAGGACCCCTAAAGGCCACCCACAATATACACATAAAAATAAATTAAAGGATCCGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTAGATTTATGAGATGGTAAAATATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAAAAATAAACATTGAAGAGAAATTTCAAGAGAAATAAATAATTCAATGATTTGATCAAAAATATTACTATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGA

mRNA sequence

ATGAAAGAACAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGA

Coding sequence (CDS)

ATGAAAGAACAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGA

Protein sequence

MKEQKGLRISEGLITESLTNDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLCQGSWMRNCSRHHLTTFGRNR

Homology

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BLAST of HG10017415 vs. NCBI nr
Match: KAF9825354.1 (hypothetical protein H0E87_005076 [Populus deltoides])

HSP 1 Score: 294.3 bits (752), Expect = 7.9e-76
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDA
Sbjct: 45  DVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDA 104

Query: 81  ALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEY 140
           ALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGE+EGTCITRAKSEKIPHEY
Sbjct: 105 ALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGELEGTCITRAKSEKIPHEY 164

Query: 141 STIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC 176
           STIVGIQESVHEILMNLKEIVLRSNLYGTR+A +C
Sbjct: 165 STIVGIQESVHEILMNLKEIVLRSNLYGTRNALIC 199

[Close]

BLAST of HG10017415 vs. NCBI nr
Match: TXG68058.1 (hypothetical protein EZV62_009333 [Acer yangbiense])

HSP 1 Score: 287.3 bits (734), Expect = 9.6e-74
Identity = 150/169 (88.76%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDA
Sbjct: 45  DVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVTDQGMQRAEVMIKGPGLGRDA 104

Query: 81  ALRAIRRS--------------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGT 140
           ALRAIRRS              DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 105 ALRAIRRSGILLSFWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 164

Query: 141 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC 176
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDA +C
Sbjct: 165 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDALIC 213

[Close]

BLAST of HG10017415 vs. NCBI nr
Match: KAF8376862.1 (hypothetical protein HHK36_031458 [Tetracentron sinense] >KAF8398788.1 hypothetical protein HHK36_014646 [Tetracentron sinense])

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-71
Identity = 147/172 (85.47%), Postives = 151/172 (87.79%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGN IR VVDQGMQRAEVMIKGPGLGRDA
Sbjct: 158 DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNVIRTVVDQGMQRAEVMIKGPGLGRDA 217

Query: 81  ALRAIRRS-----------------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEI 140
           ALRAIRRS                 DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEI
Sbjct: 218 ALRAIRRSGILLSFVRDWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEI 277

Query: 141 EGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC 176
           EGTCITRAKSEKIPHEYSTIVGI+ESV EIL+NLKEIVLRSNLYGT DAS+C
Sbjct: 278 EGTCITRAKSEKIPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGTLDASIC 329

[Close]

BLAST of HG10017415 vs. NCBI nr
Match: XP_027332403.1 (uncharacterized protein LOC113847446 [Abrus precatorius] >XP_027332529.1 uncharacterized protein LOC113847521 [Abrus precatorius] >XP_027332764.1 uncharacterized protein LOC113847686 [Abrus precatorius] >XP_027339175.1 uncharacterized protein LOC113852952 [Abrus precatorius] >XP_027344314.1 uncharacterized protein LOC113856613 [Abrus precatorius] >XP_027345341.1 uncharacterized protein LOC113857538 [Abrus precatorius] >XP_027345910.1 uncharacterized protein LOC113857838 [Abrus precatorius])

HSP 1 Score: 277.3 bits (708), Expect = 9.9e-71
Identity = 148/188 (78.72%), Postives = 152/188 (80.85%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDA
Sbjct: 45  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDA 104

Query: 81  ALRAIRRS---------------------------------DSKRLYYGRFILSPLMKGQ 140
           ALRAIRRS                                 DSKRLYYGRFILSPLMKGQ
Sbjct: 105 ALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRWKCVESRVDSKRLYYGRFILSPLMKGQ 164

Query: 141 ADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLY 176
           ADTIGIA+R+ LLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLY
Sbjct: 165 ADTIGIAVRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLY 224

[Close]

BLAST of HG10017415 vs. NCBI nr
Match: KAD0481659.1 (hypothetical protein E3N88_44197 [Mikania micrantha])

HSP 1 Score: 276.2 bits (705), Expect = 2.2e-70
Identity = 145/170 (85.29%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRV+SWSSAGTCGF+GTRRGTPFAAQTAA NAIRAVVDQGMQRAEVMIKGPGLGRDA
Sbjct: 43  DVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDA 102

Query: 81  ALRAIRRS---------------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEG 140
           ALRAIRRS               DSKRL YGRFILSPLMKGQADTIGIAMR+ALLGEIEG
Sbjct: 103 ALRAIRRSVSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAMRRALLGEIEG 162

Query: 141 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC 176
           TCITRAKSEKI HEYSTI+GIQESVHEILMNLKEIVLRSNLYGT +AS+C
Sbjct: 163 TCITRAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASIC 212

[Close]

BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-42
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 87  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 146
           R+DSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI
Sbjct: 21  RADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 80

Query: 147 QESVHEILMNLKEIVLRSNLYGTRDASLC 176
           QESVHEILMNLKEIVLRSNLYGTRDAS+C
Sbjct: 81  QESVHEILMNLKEIVLRSNLYGTRDASIC 109

[Close]

BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: A1XGS0 (DNA-directed RNA polymerase subunit alpha OS=Ranunculus macranthus OX=334596 GN=rpoA PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-42
Identity = 85/89 (95.51%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 87  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 146
           R+DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGI
Sbjct: 21  RADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIVGI 80

Query: 147 QESVHEILMNLKEIVLRSNLYGTRDASLC 176
           +ESVHEILMNLKEIVLRSNLYGTRDAS+C
Sbjct: 81  EESVHEILMNLKEIVLRSNLYGTRDASIC 109

[Close]

BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-41
Identity = 83/89 (93.26%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 87  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 146
           R+DSKRLYYGRF+L+PLM+GQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGI
Sbjct: 21  RADSKRLYYGRFLLAPLMRGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIVGI 80

Query: 147 QESVHEILMNLKEIVLRSNLYGTRDASLC 176
           QESVHEILMNLKEIVLRSNLYGTRDAS+C
Sbjct: 81  QESVHEILMNLKEIVLRSNLYGTRDASIC 109

[Close]

BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: Q7YJU6 (DNA-directed RNA polymerase subunit alpha OS=Calycanthus floridus var. glaucus OX=212734 GN=rpoA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-41
Identity = 82/89 (92.13%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 87  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 146
           R+DS RLYYGRF+LSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEK+PHEYSTIVGI
Sbjct: 21  RTDSNRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKVPHEYSTIVGI 80

Query: 147 QESVHEILMNLKEIVLRSNLYGTRDASLC 176
           +ESVHEILMNLKEIVL+SNLYGTRDAS+C
Sbjct: 81  EESVHEILMNLKEIVLKSNLYGTRDASIC 109

[Close]

BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: Q3V502 (DNA-directed RNA polymerase subunit alpha OS=Acorus calamus OX=4465 GN=rpoA PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-41
Identity = 82/89 (92.13%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 87  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 146
           R+DSKRLYYGRFILSPL+KGQADTIGIAMR+ALLGEIEGTCITRAKSEK+PHEYSTI GI
Sbjct: 21  RADSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYSTIAGI 80

Query: 147 QESVHEILMNLKEIVLRSNLYGTRDASLC 176
           +ESVHEILMNLKEIVLRSNLYGTRDAS+C
Sbjct: 81  EESVHEILMNLKEIVLRSNLYGTRDASIC 109

[Close]

BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A5C7IG80 (Plastid-encoded RNA polymerase subunit alpha OS=Acer yangbiense OX=1000413 GN=EZV62_009333 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.6e-74
Identity = 150/169 (88.76%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDA
Sbjct: 45  DVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVTDQGMQRAEVMIKGPGLGRDA 104

Query: 81  ALRAIRRS--------------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGT 140
           ALRAIRRS              DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 105 ALRAIRRSGILLSFWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 164

Query: 141 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC 176
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDA +C
Sbjct: 165 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDALIC 213

[Close]

BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A5N6LCR1 (RPOLD domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_44197 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.1e-70
Identity = 145/170 (85.29%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRV+SWSSAGTCGF+GTRRGTPFAAQTAA NAIRAVVDQGMQRAEVMIKGPGLGRDA
Sbjct: 43  DVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDA 102

Query: 81  ALRAIRRS---------------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEG 140
           ALRAIRRS               DSKRL YGRFILSPLMKGQADTIGIAMR+ALLGEIEG
Sbjct: 103 ALRAIRRSVSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAMRRALLGEIEG 162

Query: 141 TCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC 176
           TCITRAKSEKI HEYSTI+GIQESVHEILMNLKEIVLRSNLYGT +AS+C
Sbjct: 163 TCITRAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASIC 212

[Close]

BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A2P6P177 (Multifunctional fusion protein OS=Rosa chinensis OX=74649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.8e-70
Identity = 149/198 (75.25%), Postives = 154/198 (77.78%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDA
Sbjct: 45  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDA 104

Query: 81  ALRAIRRS-------------------------------------------DSKRLYYGR 140
           ALRAIRRS                                           DSKRLYYGR
Sbjct: 105 ALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRKVTVSTRTLQWKCVESRADSKRLYYGR 164

Query: 141 FILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNL 176
           FIL+PLMKGQADTIGIAMR+ALLGEIEGTCITRA+SEKIPHEYSTIVGIQESVHEILMNL
Sbjct: 165 FILAPLMKGQADTIGIAMRRALLGEIEGTCITRARSEKIPHEYSTIVGIQESVHEILMNL 224

[Close]

BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A5N6N9A8 (S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22057 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.1e-70
Identity = 144/172 (83.72%), Postives = 150/172 (87.21%), Query Frame = 0


Query: 19  TNDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGR 78
           T DVRGRV+SWSSAGTCGF+GTRRGTPFAAQTAA NAIRAVVDQGMQRAEVMIKGPGLGR
Sbjct: 187 TRDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGR 246

Query: 79  DAALRAIRRS---------------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEI 138
           DA LRAIRRS               DSKRL YGRFILSPLMKGQADTIGIAMR+ALLGEI
Sbjct: 247 DATLRAIRRSVSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAMRRALLGEI 306

Query: 139 EGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC 176
           EGTCITRAK EKI HEYSTI+GIQESVHEILMNLKEIVLRSNLYGT +AS+C
Sbjct: 307 EGTCITRAKFEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASIC 358

[Close]

BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A7J6HLW7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019803 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.1e-70
Identity = 143/174 (82.18%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRVISWSSAGTCGFKGTRRGTPFAAQT AGNAIR VVDQGMQ+AEVMIKGPGLGRDA
Sbjct: 211 DVRGRVISWSSAGTCGFKGTRRGTPFAAQTVAGNAIRTVVDQGMQQAEVMIKGPGLGRDA 270

Query: 81  ALRAIRRS-------------------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLG 140
           ALRAIRRS                   DSK LYYGRFIL+PLM+GQADTIGI MR+ALLG
Sbjct: 271 ALRAIRRSEKVIVSTRPLQWKCVESRADSKSLYYGRFILAPLMRGQADTIGIVMRRALLG 330

Query: 141 EIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC 176
           EIEGTCITRAKS KIPHEYS IVGIQESVHEILMNLKEIVLRSNLYGTR+AS+C
Sbjct: 331 EIEGTCITRAKSNKIPHEYSNIVGIQESVHEILMNLKEIVLRSNLYGTREASIC 384

[Close]

BLAST of HG10017415 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-39
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 87  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 146
           + DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GI
Sbjct: 21  KRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIAGI 80

Query: 147 QESVHEILMNLKEIVLRSNLYGTRDASLC 176
           QESVHEILMNL EIVLRSNLYGTR+A +C
Sbjct: 81  QESVHEILMNLNEIVLRSNLYGTRNALIC 109

[Close]

BLAST of HG10017415 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 21  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDA 80
           DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGLGRDA
Sbjct: 45  DVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDA 104

Query: 81  ALRAIRRS 89
           ALRAIRRS
Sbjct: 105 ALRAIRRS 112

The following BLAST results are available for this feature:

BLAST of HG10017415 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9825354.1	7.9e-76	95.48	hypothetical protein H0E87_005076 [Populus deltoides]	[more]
TXG68058.1	9.6e-74	88.76	hypothetical protein EZV62_009333 [Acer yangbiense]	[more]
KAF8376862.1	1.5e-71	85.47	hypothetical protein HHK36_031458 [Tetracentron sinense] >KAF8398788.1 hypotheti...	[more]
XP_027332403.1	9.9e-71	78.72	uncharacterized protein LOC113847446 [Abrus precatorius] >XP_027332529.1 unchara...	[more]
KAD0481659.1	2.2e-70	85.29	hypothetical protein E3N88_44197 [Mikania micrantha]	[more]

BLAST of HG10017415 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK3	1.6e-42	96.63	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
A1XGS0	2.6e-42	95.51	DNA-directed RNA polymerase subunit alpha OS=Ranunculus macranthus OX=334596 GN=...	[more]
Q09WY5	1.0e-41	93.26	DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3...	[more]
Q7YJU6	1.7e-41	92.13	DNA-directed RNA polymerase subunit alpha OS=Calycanthus floridus var. glaucus O...	[more]
Q3V502	2.2e-41	92.13	DNA-directed RNA polymerase subunit alpha OS=Acorus calamus OX=4465 GN=rpoA PE=3...	[more]

BLAST of HG10017415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7IG80	4.6e-74	88.76	Plastid-encoded RNA polymerase subunit alpha OS=Acer yangbiense OX=1000413 GN=EZ...	[more]
A0A5N6LCR1	1.1e-70	85.29	RPOLD domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_44197 PE...	[more]
A0A2P6P177	1.8e-70	75.25	Multifunctional fusion protein OS=Rosa chinensis OX=74649 GN=rps11 PE=3 SV=1	[more]
A0A5N6N9A8	3.1e-70	83.72	S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22057 ...	[more]
A0A7J6HLW7	4.1e-70	82.18	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019803 PE=3 SV=1	[more]

BLAST of HG10017415 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00740.1	2.2e-39	87.64	RNA polymerase subunit alpha	[more]
ATCG00750.1	1.1e-30	97.06	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 20..88 e-value: 1.3E-23 score: 83.5
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 2..135 score: 15.186563
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 125..179 e-value: 8.0E-12 score: 47.1
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 125..176
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 14..101 e-value: 3.5E-20 score: 74.2
IPR011773	DNA-directed RNA polymerase, alpha subunit	PANTHER	PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 22..175
None	No IPR available	PANTHER	PTHR32108:SF1	SUBFAMILY NOT NAMED	coord: 22..175
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 20..89
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 89..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017415.1	HG10017415.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006413	translational initiation
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003743	translation initiation factor activity