HG10017401 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017401
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	Chr03: 13994540 .. 13994848 (+)
RNA-Seq Expression	HG10017401
Synteny	HG10017401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGGAATTTTCCTTGGGAGTATCGGGAAGGAATTGGAATGTAATAATATCGATTCATACAGATACAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAAGGAAAAAAACGAAGATTTCACATAG

mRNA sequence

TCATATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGGAATTTTCCTTGGGAGTATCGGGAAGGAATTGGAATGTAATAATATCGATTCATACAGATACAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAAGGAAAAAAACGAAGATTTCACATAG

Coding sequence (CDS)

TCATATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGGAATTTTCCTTGGGAGTATCGGGAAGGAATTGGAATGTAATAATATCGATTCATACAGATACAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAAGGAAAAAAACGAAGATTTCACATAG

Protein sequence

SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSLLIQTLYPRDRDREKEKNEDFT

Homology

[Close]

BLAST of HG10017401 vs. NCBI nr
Match: PPR83387.1 (hypothetical protein GOBAR_AA37329 [Gossypium barbadense])

HSP 1 Score: 147.1 bits (370), Expect = 8.1e-32
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
           S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG
Sbjct: 292 SDHIDIPSTQHRSSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 351

Query: 61  SIGKELECNNIDSYRYRKGSL 82
            I KELECNNIDSYR ++ S+
Sbjct: 352 GISKELECNNIDSYRRKRFSI 372

[Close]

BLAST of HG10017401 vs. NCBI nr
Match: TYI03364.1 (hypothetical protein ES332_A11G333500v1 [Gossypium tomentosum])

HSP 1 Score: 141.7 bits (356), Expect = 3.4e-30
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1   SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
           S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG
Sbjct: 33  SDHIDIPSTQHRSSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFRIQFGIFLG 92

Query: 61  SIGKELECNNIDSYRYRKGSL 82
            I KELECNNIDSYR ++ S+
Sbjct: 93  GISKELECNNIDSYRRKRFSI 113

[Close]

BLAST of HG10017401 vs. NCBI nr
Match: KAG4109387.1 (hypothetical protein ERO13_1Z050202v2, partial [Gossypium hirsutum])

HSP 1 Score: 140.2 bits (352), Expect = 9.9e-30
Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
          S HIDIPSTQHRSSKGSRR TKAR P SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG
Sbjct: 10 SDHIDIPSTQHRSSKGSRRLTKARNPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFGIFLG 69

Query: 61 SIGKELECNNIDSYRYRKGSL 82
           I KELECNNIDSYR ++ S+
Sbjct: 70 GISKELECNNIDSYRRKRFSI 90

[Close]

BLAST of HG10017401 vs. NCBI nr
Match: TYJ12281.1 (hypothetical protein E1A91_A11G338200v1, partial [Gossypium mustelinum])

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-29
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1   SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
           S +IDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG
Sbjct: 22  SDYIDIPSTQHRSSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFGIFLG 81

Query: 61  SIGKELECNNIDSYRYRKGSL 82
            I KELECNNIDSYR ++ S+
Sbjct: 82  GISKELECNNIDSYRRKRFSI 102

[Close]

BLAST of HG10017401 vs. NCBI nr
Match: TYG79516.1 (hypothetical protein ES288_D02G144500v1, partial [Gossypium darwinii])

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1   SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
           S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQF IFLG
Sbjct: 24  SDHIDIPSTQHRSSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFRIFLG 83

Query: 61  SIGKELECNNIDSYRYRKGSL 82
            I KELECNNIDSYR ++ S+
Sbjct: 84  GISKELECNNIDSYRRKRFSI 104

[Close]

BLAST of HG10017401 vs. ExPASy TrEMBL
Match: A0A2P5VX61 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37329 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.9e-32
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
           S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG
Sbjct: 292 SDHIDIPSTQHRSSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 351

Query: 61  SIGKELECNNIDSYRYRKGSL 82
            I KELECNNIDSYR ++ S+
Sbjct: 352 GISKELECNNIDSYRRKRFSI 372

[Close]

BLAST of HG10017401 vs. ExPASy TrEMBL
Match: A0A5D2NJX8 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G333500v1 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1   SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
           S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG
Sbjct: 33  SDHIDIPSTQHRSSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFRIQFGIFLG 92

Query: 61  SIGKELECNNIDSYRYRKGSL 82
            I KELECNNIDSYR ++ S+
Sbjct: 93  GISKELECNNIDSYRRKRFSI 113

[Close]

BLAST of HG10017401 vs. ExPASy TrEMBL
Match: A0A5D2XHD7 (Uncharacterized protein (Fragment) OS=Gossypium mustelinum OX=34275 GN=E1A91_A11G338200v1 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.3e-30
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1   SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
           S +IDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG
Sbjct: 22  SDYIDIPSTQHRSSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFGIFLG 81

Query: 61  SIGKELECNNIDSYRYRKGSL 82
            I KELECNNIDSYR ++ S+
Sbjct: 82  GISKELECNNIDSYRRKRFSI 102

[Close]

BLAST of HG10017401 vs. ExPASy TrEMBL
Match: A0A5D2DGW6 (Uncharacterized protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_D02G144500v1 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1   SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
           S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQF IFLG
Sbjct: 24  SDHIDIPSTQHRSSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFRIFLG 83

Query: 61  SIGKELECNNIDSYRYRKGSL 82
            I KELECNNIDSYR ++ S+
Sbjct: 84  GISKELECNNIDSYRRKRFSI 104

[Close]

BLAST of HG10017401 vs. ExPASy TrEMBL
Match: A0A5D2P344 (Uncharacterized protein (Fragment) OS=Gossypium tomentosum OX=34277 GN=ES332_A09G124500v1 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.1e-29
Identity = 68/81 (83.95%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1   SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG 60
           S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFL 
Sbjct: 22  SDHIDIPSTQHRSSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFGIFLE 81

Query: 61  SIGKELECNNIDSYRYRKGSL 82
            I KE ECNNIDSYR ++ S+
Sbjct: 82  GISKEFECNNIDSYRRKRFSI 102

The following BLAST results are available for this feature:

BLAST of HG10017401 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR83387.1	8.1e-32	87.65	hypothetical protein GOBAR_AA37329 [Gossypium barbadense]	[more]
TYI03364.1	3.4e-30	86.42	hypothetical protein ES332_A11G333500v1 [Gossypium tomentosum]	[more]
KAG4109387.1	9.9e-30	85.19	hypothetical protein ERO13_1Z050202v2, partial [Gossypium hirsutum]	[more]
TYJ12281.1	1.3e-29	85.19	hypothetical protein E1A91_A11G338200v1, partial [Gossypium mustelinum]	[more]
TYG79516.1	2.2e-29	85.19	hypothetical protein ES288_D02G144500v1, partial [Gossypium darwinii]	[more]

BLAST of HG10017401 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5VX61	3.9e-32	87.65	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37329 PE=4 SV...	[more]
A0A5D2NJX8	1.6e-30	86.42	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G333500v1 P...	[more]
A0A5D2XHD7	6.3e-30	85.19	Uncharacterized protein (Fragment) OS=Gossypium mustelinum OX=34275 GN=E1A91_A11...	[more]
A0A5D2DGW6	1.1e-29	85.19	Uncharacterized protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_D02G1...	[more]
A0A5D2P344	3.1e-29	83.95	Uncharacterized protein (Fragment) OS=Gossypium tomentosum OX=34277 GN=ES332_A09...	[more]

BLAST of HG10017401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017401.1	HG10017401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome