HG10017387 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017387
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit alpha
Location	Chr03: 13933029 .. 13934507 (-)
RNA-Seq Expression	HG10017387
Synteny	HG10017387

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAAAAATAAACATTGAAGAGAAATTTCAAGAGAAATAAATAATTCAATGATTTGATCAAAAAATATTACTATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCTACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCTGTTCGAAATGCGAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAACAATAAGCAGAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCTAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGTCTCAAAAGGTCCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATAAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTCCATAA

mRNA sequence

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGGGGCTACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCTGTTCGAAATGCGAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAACAATAAGCAGAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCTAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGTCTCAAAAGGTCCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATAAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTCCATAA

Coding sequence (CDS)

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGGGGCTACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCTGTTCGAAATGCGAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAACAATAAGCAGAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCTAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGTCTCAAAAGGTCCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATAAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTCCATAA

Protein sequence

MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFP

Homology

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BLAST of HG10017387 vs. NCBI nr
Match: PRQ15682.1 (putative DNA-directed RNA polymerase [Rosa chinensis])

HSP 1 Score: 691.0 bits (1782), Expect = 6.0e-195
Identity = 361/465 (77.63%), Postives = 382/465 (82.15%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP+IGSRRN RI SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKIGSRRNRRIGSRKNARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGA------ 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSG       
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 --------------------------------------------------------TIGI 180
                                                                   TIGI
Sbjct: 121 DVTPMPHNGCRPPKKRRKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGI 180

Query: 181 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 240
           AMR+ALLGEIEGTCITRA+SEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+AS
Sbjct: 181 AMRRALLGEIEGTCITRARSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNAS 240

Query: 241 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD 300
           ICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPINLCI+L+IERNRGYRI+TPNNFQD
Sbjct: 241 ICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIQLQIERNRGYRIKTPNNFQD 300

Query: 301 ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI 360
            SYPIDA+FMPVRNANHSIHSYVNGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFI
Sbjct: 301 GSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFI 360

Query: 361 PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYN 404
           PFLHAEE  ENFH +NN+ KVTLPLFTFH+K A  RK K EI LKYIFIDQSELPPR+YN
Sbjct: 361 PFLHAEE--ENFHFENNQHKVTLPLFTFHDKFANPRKSKTEITLKYIFIDQSELPPRVYN 420

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BLAST of HG10017387 vs. NCBI nr
Match: KAF4397623.1 (hypothetical protein G4B88_027363 [Cannabis sativa])

HSP 1 Score: 673.7 bits (1737), Expect = 9.9e-190
Identity = 355/465 (76.34%), Postives = 377/465 (81.08%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPR GSR+N    SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKAIPRSGSRKNRHTGSRKNARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGA------ 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQ+AEVMIKGPGLGRDAALRAIRRSG       
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQQAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 --------------------------------------------------------TIGI 180
                                                                   TIGI
Sbjct: 121 DVTPMPHNGCRPPKKRQKVIVSTRPLQWKCVESRADSKRLYYGRFILAPLMRGQADTIGI 180

Query: 181 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 240
            MR+ALLGEIEGTCITRAKS+KIPHEYS +VGIQESVHEILMNLKEIVLRSNLYGTR+AS
Sbjct: 181 VMRRALLGEIEGTCITRAKSDKIPHEYSNLVGIQESVHEILMNLKEIVLRSNLYGTREAS 240

Query: 241 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD 300
           ICVKGPG VTAQDIILP SVEIVDNTQHIANLTEPINLCIEL+IERNRGYRI+TPNNFQ+
Sbjct: 241 ICVKGPGYVTAQDIILPSSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQN 300

Query: 301 ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI 360
            SYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL I
Sbjct: 301 GSYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLLI 360

Query: 361 PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYN 404
           PFLHAEE  ENFHL+NN+ K TLPLF FH ++AK RK KKEIALKYIFIDQSELPPR+YN
Sbjct: 361 PFLHAEE--ENFHLENNQHKGTLPLFDFHGRVAKPRKTKKEIALKYIFIDQSELPPRVYN 420

[Close]

BLAST of HG10017387 vs. NCBI nr
Match: TXG68058.1 (hypothetical protein EZV62_009333 [Acer yangbiense])

HSP 1 Score: 667.9 bits (1722), Expect = 5.4e-188
Identity = 348/431 (80.74%), Postives = 367/431 (85.15%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPR GSRR GR+ SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKSIPRSGSRRTGRVGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGA------ 120
           F+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSG       
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFWK 120

Query: 121 ---------------------------TIGIAMRKALLGEIEGTCITRAKSEKIPHEYST 180
                                      TIGIAMR+ALLGEIEGTCITRAKSEKIPHEYST
Sbjct: 121 CVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYST 180

Query: 181 IVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI 240
           IVGIQESVHEILMNLKEIVLRSNLYGTRDA ICVKGPG VTAQDI+LPPSVEIVDNTQHI
Sbjct: 181 IVGIQESVHEILMNLKEIVLRSNLYGTRDALICVKGPGYVTAQDILLPPSVEIVDNTQHI 240

Query: 241 ANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQ 300
           ANLTEP + CI L+IERNRGY I+TPNNFQD SYPIDAIFMPVRNANHSIHSY NGNEKQ
Sbjct: 241 ANLTEPTDFCIGLQIERNRGYNIKTPNNFQDGSYPIDAIFMPVRNANHSIHSYGNGNEKQ 300

Query: 301 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFH 360
           EILFLEIWTNG LTPKEALHEASRNLIDLFIPFL + E  EN H +NN+ KV+LP  TFH
Sbjct: 301 EILFLEIWTNGGLTPKEALHEASRNLIDLFIPFLQSAE--ENLHFENNQYKVSLPYLTFH 360

Query: 361 EKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRI 399
           +++AKL+KKKKEIA K IFIDQSEL PRIYNCLK+SNIHTLFDLLNNS ++LMKI+HFRI
Sbjct: 361 DRVAKLKKKKKEIAWKSIFIDQSELSPRIYNCLKKSNIHTLFDLLNNSQEDLMKIEHFRI 420

[Close]

BLAST of HG10017387 vs. NCBI nr
Match: KAF1876904.1 (hypothetical protein Lal_00033201 [Lupinus albus])

HSP 1 Score: 657.9 bits (1696), Expect = 5.6e-185
Identity = 341/405 (84.20%), Postives = 361/405 (89.14%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKP P++GSR+NGRI SRK  R+IPKGVIHVQASFNNTIVTVTDV GRVISWSSAGTCG
Sbjct: 1   MAKPTPKMGSRKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVGGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGA--TIGI 120
           FKGTRRGTPFAAQTAA NAI  V DQGMQRAEVMIKGPGLGRDAALRAIRRSG   TIGI
Sbjct: 61  FKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGQADTIGI 120

Query: 121 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 180
           AMR+ LLGEIEGTCITRAKSEKIPHEYST+VGIQESVHEILMNLKEIVLRSNLYGTRDAS
Sbjct: 121 AMRRVLLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTRDAS 180

Query: 181 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD 240
           I VKGPG VTAQDI+LPPSVEIVDNTQHIANLTEPIN  I L+I RNRGYRI+T   FQD
Sbjct: 181 IFVKGPGYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGLQIARNRGYRIKTLTKFQD 240

Query: 241 ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI 300
            SYPIDA+FM VRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL EASRNLIDLFI
Sbjct: 241 RSYPIDAVFMSVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFI 300

Query: 301 PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYN 360
           PFLHAEEE  NF  +NN+ KV LP FTF +   K RK KKEIALK IFIDQ EL PRIYN
Sbjct: 301 PFLHAEEENLNF--ENNQHKVNLPPFTFDDLFEKRRKNKKEIALKSIFIDQFELSPRIYN 360

Query: 361 CLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF 404
           CLKRSNIHTLFDLLNNS ++LMK++HFR+EDVK ILDILE+EK+F
Sbjct: 361 CLKRSNIHTLFDLLNNSQEDLMKMEHFRVEDVKDILDILEIEKHF 403

[Close]

BLAST of HG10017387 vs. NCBI nr
Match: AES88253.2 (DNA-directed RNA polymerase subunit alpha [Medicago truncatula])

HSP 1 Score: 653.3 bits (1684), Expect = 1.4e-183
Identity = 344/443 (77.65%), Postives = 372/443 (83.97%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IP+IGSR+NGRI SRK  R+IPKGVI+VQASFNNTIVTVTDVRGRVISWSSAG+CG
Sbjct: 1   MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS-------- 120
           FKGTRRGTPFAAQTAA NAIR VVDQGMQRA V+IKGPGLGRDAALRAI RS        
Sbjct: 61  FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSEKVKVSAR 120

Query: 121 ------------------------------GATIGIAMRKALLGEIEGTCITRAKSEKIP 180
                                           TIGIAMR+ LLGEIEGTCITRAKSEKIP
Sbjct: 121 TLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCITRAKSEKIP 180

Query: 181 HEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVD 240
           HEYSTIVGIQES+HEILMNLKEIVL+SNLYGTRDASIC KGPG VTAQDIILPPSVEIVD
Sbjct: 181 HEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVD 240

Query: 241 NTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVN 300
           NTQHIANLTEPINLCIEL+IER RGYRI+T NN QD SY IDA+FMPVRNANHSIHSYVN
Sbjct: 241 NTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVN 300

Query: 301 GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLP 360
           GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE  NF  +NN+ KVTLP
Sbjct: 301 GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNF--ENNQHKVTLP 360

Query: 361 LFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELM 404
           LFTFH++L   KLRK KKEIALK IFIDQ EL PRIYNCLK+SNIHTL +LLN S ++LM
Sbjct: 361 LFTFHDRLLKDKLRKNKKEIALKSIFIDQLELSPRIYNCLKKSNIHTLLELLNKSQEDLM 420

[Close]

BLAST of HG10017387 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 2.4e-162
Identity = 286/303 (94.39%), Postives = 290/303 (95.71%), Query Frame = 0


Query: 101 GRDAALRAIRRSGATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILM 160
           GR      ++  G TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILM
Sbjct: 30  GRFILSPLMKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILM 89

Query: 161 NLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIEL 220
           NLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIEL
Sbjct: 90  NLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIEL 149

Query: 221 KIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSL 280
           KIERNRGY IQTPNNFQDASYP+DAIFMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSL
Sbjct: 150 KIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSL 209

Query: 281 TPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEI 340
           TPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK+KVTLPLFTFHEKLAKLRKKKKEI
Sbjct: 210 TPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKVTLPLFTFHEKLAKLRKKKKEI 269

Query: 341 ALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEME 400
           ALKYIFIDQSELPPRIYNCLKR NIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEME
Sbjct: 270 ALKYIFIDQSELPPRIYNCLKRCNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEME 329

Query: 401 KNF 404
           KNF
Sbjct: 330 KNF 332

[Close]

BLAST of HG10017387 vs. ExPASy Swiss-Prot
Match: Q49KW6 (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoA PE=3 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 1.1e-140
Identity = 251/289 (86.85%), Postives = 267/289 (92.39%), Query Frame = 0


Query: 115 TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT 174
           TIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT
Sbjct: 44  TIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT 103

Query: 175 RDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPN 234
           R+ASICVKGPGCVTAQDIILP SVEIVDNTQ+IANLTEPINLCI L+IERNRGY I+TP 
Sbjct: 104 RNASICVKGPGCVTAQDIILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPK 163

Query: 235 NFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 294
           NFQD SYPIDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 295 DLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP 354
           DLFIPFLHAEE  EN HL+NN+ KVTLP FTFH++LAKLRK KKEIALK IFIDQ ELPP
Sbjct: 224 DLFIPFLHAEE--ENLHLENNQYKVTLPFFTFHDRLAKLRKTKKEIALKSIFIDQFELPP 283

Query: 355 RIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF 404
           R YNCLKR NIHTLFDLLN S ++LMK+++FRIEDVK ILD LE+EK F
Sbjct: 284 RTYNCLKRYNIHTLFDLLNKSQEDLMKMEYFRIEDVKQILDSLEIEKAF 330

[Close]

BLAST of HG10017387 vs. ExPASy Swiss-Prot
Match: Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 1.1e-140
Identity = 250/291 (85.91%), Postives = 271/291 (93.13%), Query Frame = 0


Query: 115 TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT 174
           TIGIAMR+ LLGEIEGTCITR KSEKIPHEYSTI+GI+ESVHEILMNLKEIVLRSNLYGT
Sbjct: 44  TIGIAMRRVLLGEIEGTCITRVKSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGT 103

Query: 175 RDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPN 234
           RDASIC KGPG VTAQDIILPPSVEIVDNTQHIAN+TEP+NLCIELKIERNRGYRI+T  
Sbjct: 104 RDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLK 163

Query: 235 NFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 294
           NFQD SYPIDA FMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223

Query: 295 DLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSEL 354
           DLFIPFLHAEE  +NF+L+NN+ KVTLPLFTFH+ LA  KLRKKKKEIALK IFIDQ EL
Sbjct: 224 DLFIPFLHAEE--DNFNLENNQHKVTLPLFTFHDILAKEKLRKKKKEIALKSIFIDQLEL 283

Query: 355 PPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF 404
           PPRIYNCLKRSNIHTL +LLNNS ++L+KI+HFR+EDVK+ILD LE+EK+F
Sbjct: 284 PPRIYNCLKRSNIHTLLELLNNSQEDLLKIEHFRVEDVKYILDFLEIEKHF 332

[Close]

BLAST of HG10017387 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 2.0e-140
Identity = 252/299 (84.28%), Postives = 269/299 (89.97%), Query Frame = 0


Query: 101 GRDAALRAIRRSGATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILM 160
           GR      +R    TIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILM
Sbjct: 30  GRFLLAPLMRGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILM 89

Query: 161 NLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIEL 220
           NLKEIVLRSNLYGTRDASICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPI LCIEL
Sbjct: 90  NLKEIVLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPITLCIEL 149

Query: 221 KIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSL 280
           +IERNRGYRI+TPNNFQ+ SYPIDA+FMPVRNANHSIHSYVNGNE QEILFLEIWTNGSL
Sbjct: 150 QIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIHSYVNGNENQEILFLEIWTNGSL 209

Query: 281 TPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEI 340
           TPKEALHEASRNLIDLFIPF HAEE     HL+NN+ K TLPLF FH +LAK RK KKEI
Sbjct: 210 TPKEALHEASRNLIDLFIPFFHAEE-----HLENNQHKGTLPLFNFHGRLAKPRKTKKEI 269

Query: 341 ALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEM 400
           ALKYI+IDQSELPPR+YNCLKRSNI+T  +LLNNS +ELMKI+ FRIEDVKHILD+LE+
Sbjct: 270 ALKYIYIDQSELPPRVYNCLKRSNINTFLELLNNSQEELMKIQDFRIEDVKHILDVLEI 323

[Close]

BLAST of HG10017387 vs. ExPASy Swiss-Prot
Match: Q9MTJ3 (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=85636 GN=rpoA PE=3 SV=2)

HSP 1 Score: 486.5 bits (1251), Expect = 2.9e-136
Identity = 245/289 (84.78%), Postives = 261/289 (90.31%), Query Frame = 0


Query: 115 TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT 174
           TIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT
Sbjct: 44  TIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT 103

Query: 175 RDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPN 234
            +ASICVKGPGCVTAQDI+LPPSVEI+DNTQHIA+L EPI+LCI L+IERNRGY I++PN
Sbjct: 104 CNASICVKGPGCVTAQDILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPN 163

Query: 235 NFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 294
           NFQD SYPIDA+FMPVRNANHSIHSY N NEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 295 DLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPP 354
           DLF+PFLHAEE  EN HL  NK  VT PLFTFH+KLAKLRK K EIALK IFIDQ ELPP
Sbjct: 224 DLFLPFLHAEE--ENLHLGKNKYNVTFPLFTFHKKLAKLRKPKNEIALKSIFIDQLELPP 283

Query: 355 RIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF 404
           RIYN LK S IHTL DLLN S ++LMK+KHFRIEDVK ILDILE+EK F
Sbjct: 284 RIYNSLKGSKIHTLSDLLNKSQEDLMKMKHFRIEDVKQILDILEIEKAF 330

[Close]

BLAST of HG10017387 vs. ExPASy TrEMBL
Match: A0A2P6P177 (Multifunctional fusion protein OS=Rosa chinensis OX=74649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 2.9e-195
Identity = 361/465 (77.63%), Postives = 382/465 (82.15%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP+IGSRRN RI SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKIGSRRNRRIGSRKNARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGA------ 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSG       
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 --------------------------------------------------------TIGI 180
                                                                   TIGI
Sbjct: 121 DVTPMPHNGCRPPKKRRKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGI 180

Query: 181 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 240
           AMR+ALLGEIEGTCITRA+SEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+AS
Sbjct: 181 AMRRALLGEIEGTCITRARSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNAS 240

Query: 241 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD 300
           ICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPINLCI+L+IERNRGYRI+TPNNFQD
Sbjct: 241 ICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIQLQIERNRGYRIKTPNNFQD 300

Query: 301 ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI 360
            SYPIDA+FMPVRNANHSIHSYVNGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFI
Sbjct: 301 GSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFI 360

Query: 361 PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYN 404
           PFLHAEE  ENFH +NN+ KVTLPLFTFH+K A  RK K EI LKYIFIDQSELPPR+YN
Sbjct: 361 PFLHAEE--ENFHFENNQHKVTLPLFTFHDKFANPRKSKTEITLKYIFIDQSELPPRVYN 420

[Close]

BLAST of HG10017387 vs. ExPASy TrEMBL
Match: A0A7J6HQR3 (Plastid-encoded RNA polymerase subunit alpha OS=Cannabis sativa OX=3483 GN=G4B88_027363 PE=3 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 4.8e-190
Identity = 355/465 (76.34%), Postives = 377/465 (81.08%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPR GSR+N    SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKAIPRSGSRKNRHTGSRKNARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGA------ 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQ+AEVMIKGPGLGRDAALRAIRRSG       
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQQAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 --------------------------------------------------------TIGI 180
                                                                   TIGI
Sbjct: 121 DVTPMPHNGCRPPKKRQKVIVSTRPLQWKCVESRADSKRLYYGRFILAPLMRGQADTIGI 180

Query: 181 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 240
            MR+ALLGEIEGTCITRAKS+KIPHEYS +VGIQESVHEILMNLKEIVLRSNLYGTR+AS
Sbjct: 181 VMRRALLGEIEGTCITRAKSDKIPHEYSNLVGIQESVHEILMNLKEIVLRSNLYGTREAS 240

Query: 241 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD 300
           ICVKGPG VTAQDIILP SVEIVDNTQHIANLTEPINLCIEL+IERNRGYRI+TPNNFQ+
Sbjct: 241 ICVKGPGYVTAQDIILPSSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQN 300

Query: 301 ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI 360
            SYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL I
Sbjct: 301 GSYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLLI 360

Query: 361 PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYN 404
           PFLHAEE  ENFHL+NN+ K TLPLF FH ++AK RK KKEIALKYIFIDQSELPPR+YN
Sbjct: 361 PFLHAEE--ENFHLENNQHKGTLPLFDFHGRVAKPRKTKKEIALKYIFIDQSELPPRVYN 420

[Close]

BLAST of HG10017387 vs. ExPASy TrEMBL
Match: A0A5C7IG80 (Plastid-encoded RNA polymerase subunit alpha OS=Acer yangbiense OX=1000413 GN=EZV62_009333 PE=3 SV=1)

HSP 1 Score: 667.9 bits (1722), Expect = 2.6e-188
Identity = 348/431 (80.74%), Postives = 367/431 (85.15%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPR GSRR GR+ SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKSIPRSGSRRTGRVGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGA------ 120
           F+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSG       
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFWK 120

Query: 121 ---------------------------TIGIAMRKALLGEIEGTCITRAKSEKIPHEYST 180
                                      TIGIAMR+ALLGEIEGTCITRAKSEKIPHEYST
Sbjct: 121 CVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYST 180

Query: 181 IVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI 240
           IVGIQESVHEILMNLKEIVLRSNLYGTRDA ICVKGPG VTAQDI+LPPSVEIVDNTQHI
Sbjct: 181 IVGIQESVHEILMNLKEIVLRSNLYGTRDALICVKGPGYVTAQDILLPPSVEIVDNTQHI 240

Query: 241 ANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQ 300
           ANLTEP + CI L+IERNRGY I+TPNNFQD SYPIDAIFMPVRNANHSIHSY NGNEKQ
Sbjct: 241 ANLTEPTDFCIGLQIERNRGYNIKTPNNFQDGSYPIDAIFMPVRNANHSIHSYGNGNEKQ 300

Query: 301 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFH 360
           EILFLEIWTNG LTPKEALHEASRNLIDLFIPFL + E  EN H +NN+ KV+LP  TFH
Sbjct: 301 EILFLEIWTNGGLTPKEALHEASRNLIDLFIPFLQSAE--ENLHFENNQYKVSLPYLTFH 360

Query: 361 EKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRI 399
           +++AKL+KKKKEIA K IFIDQSEL PRIYNCLK+SNIHTLFDLLNNS ++LMKI+HFRI
Sbjct: 361 DRVAKLKKKKKEIAWKSIFIDQSELSPRIYNCLKKSNIHTLFDLLNNSQEDLMKIEHFRI 420

[Close]

BLAST of HG10017387 vs. ExPASy TrEMBL
Match: A0A6A5MQ34 (Plastid-encoded RNA polymerase subunit alpha OS=Lupinus albus OX=3870 GN=Lal_00033201 PE=3 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 2.7e-185
Identity = 341/405 (84.20%), Postives = 361/405 (89.14%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKP P++GSR+NGRI SRK  R+IPKGVIHVQASFNNTIVTVTDV GRVISWSSAGTCG
Sbjct: 1   MAKPTPKMGSRKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVGGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGA--TIGI 120
           FKGTRRGTPFAAQTAA NAI  V DQGMQRAEVMIKGPGLGRDAALRAIRRSG   TIGI
Sbjct: 61  FKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGQADTIGI 120

Query: 121 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 180
           AMR+ LLGEIEGTCITRAKSEKIPHEYST+VGIQESVHEILMNLKEIVLRSNLYGTRDAS
Sbjct: 121 AMRRVLLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTRDAS 180

Query: 181 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD 240
           I VKGPG VTAQDI+LPPSVEIVDNTQHIANLTEPIN  I L+I RNRGYRI+T   FQD
Sbjct: 181 IFVKGPGYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGLQIARNRGYRIKTLTKFQD 240

Query: 241 ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI 300
            SYPIDA+FM VRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL EASRNLIDLFI
Sbjct: 241 RSYPIDAVFMSVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFI 300

Query: 301 PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYN 360
           PFLHAEEE  NF  +NN+ KV LP FTF +   K RK KKEIALK IFIDQ EL PRIYN
Sbjct: 301 PFLHAEEENLNF--ENNQHKVNLPPFTFDDLFEKRRKNKKEIALKSIFIDQFELSPRIYN 360

Query: 361 CLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF 404
           CLKRSNIHTLFDLLNNS ++LMK++HFR+EDVK ILDILE+EK+F
Sbjct: 361 CLKRSNIHTLFDLLNNSQEDLMKMEHFRVEDVKDILDILEIEKHF 403

[Close]

BLAST of HG10017387 vs. ExPASy TrEMBL
Match: G7JH57 (Plastid-encoded RNA polymerase subunit alpha OS=Medicago truncatula OX=3880 GN=MTR_4g051380 PE=3 SV=2)

HSP 1 Score: 653.3 bits (1684), Expect = 6.7e-184
Identity = 344/443 (77.65%), Postives = 372/443 (83.97%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IP+IGSR+NGRI SRK  R+IPKGVI+VQASFNNTIVTVTDVRGRVISWSSAG+CG
Sbjct: 1   MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS-------- 120
           FKGTRRGTPFAAQTAA NAIR VVDQGMQRA V+IKGPGLGRDAALRAI RS        
Sbjct: 61  FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSEKVKVSAR 120

Query: 121 ------------------------------GATIGIAMRKALLGEIEGTCITRAKSEKIP 180
                                           TIGIAMR+ LLGEIEGTCITRAKSEKIP
Sbjct: 121 TLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCITRAKSEKIP 180

Query: 181 HEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVD 240
           HEYSTIVGIQES+HEILMNLKEIVL+SNLYGTRDASIC KGPG VTAQDIILPPSVEIVD
Sbjct: 181 HEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVD 240

Query: 241 NTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVN 300
           NTQHIANLTEPINLCIEL+IER RGYRI+T NN QD SY IDA+FMPVRNANHSIHSYVN
Sbjct: 241 NTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVN 300

Query: 301 GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLP 360
           GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE  NF  +NN+ KVTLP
Sbjct: 301 GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNF--ENNQHKVTLP 360

Query: 361 LFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELM 404
           LFTFH++L   KLRK KKEIALK IFIDQ EL PRIYNCLK+SNIHTL +LLN S ++LM
Sbjct: 361 LFTFHDRLLKDKLRKNKKEIALKSIFIDQLELSPRIYNCLKKSNIHTLLELLNKSQEDLM 420

[Close]

BLAST of HG10017387 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 462.2 bits (1188), Expect = 4.2e-130
Identity = 227/286 (79.37%), Postives = 255/286 (89.16%), Query Frame = 0


Query: 115 TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT 174
           TIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGT
Sbjct: 44  TIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGT 103

Query: 175 RDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPN 234
           R+A ICV+GPG +TA+DIILPP+VEI+DNTQHIA LTEPI+LCIELKIERNRGY ++  N
Sbjct: 104 RNALICVQGPGYITARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSN 163

Query: 235 NFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 294
           NF+D SYPIDA+FMPV NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI 223

Query: 295 DLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKK--KEIALKYIFIDQSEL 354
           +LFIPFLH EE  E F+L+NN+ +VTLP F FH +L  LRKKK  KE+A +YIFIDQ EL
Sbjct: 224 NLFIPFLHVEE--ETFYLENNQHQVTLPFFPFHNRLVNLRKKKKTKELAFQYIFIDQLEL 283

Query: 355 PPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILE 399
           PPRIYNCLK+SNIHTL DLLNNS ++L+KI+HF +EDVK ILDILE
Sbjct: 284 PPRIYNCLKKSNIHTLLDLLNNSQEDLIKIEHFHVEDVKKILDILE 327

[Close]

BLAST of HG10017387 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 199.1 bits (505), Expect = 6.6e-51
Identity = 104/113 (92.04%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPI RIGSR+N R  SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPILRIGSRKNTRSGSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSG 114
           F+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGLGRDAALRAIRRSG
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSG 113

[Close]

BLAST of HG10017387 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 51.2 bits (121), Expect = 2.2e-06
Identity = 37/99 (37.37%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQ 87
           GV+HV ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPGLGRDAALRAIRRSGATIG 118
           G+    V +        K PG G  +ALRA+ RSG  IG
Sbjct: 88  GITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIG 126

[Close]

BLAST of HG10017387 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.9e-06
Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQ 87
           GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPGLGRDAALRAIRRSGATIG 118
           G+    V +        K PG G  +ALRA+ RSG  IG
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIG 126

[Close]

BLAST of HG10017387 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.9e-06
Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQ 87
           GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPGLGRDAALRAIRRSGATIG 118
           G+    V +        K PG G  +ALRA+ RSG  IG
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIG 126

The following BLAST results are available for this feature:

BLAST of HG10017387 vs. NCBI nr


Match Name	E-value	Identity	Description
PRQ15682.1	6.0e-195	77.63	putative DNA-directed RNA polymerase [Rosa chinensis]	[more]
KAF4397623.1	9.9e-190	76.34	hypothetical protein G4B88_027363 [Cannabis sativa]	[more]
TXG68058.1	5.4e-188	80.74	hypothetical protein EZV62_009333 [Acer yangbiense]	[more]
KAF1876904.1	5.6e-185	84.20	hypothetical protein Lal_00033201 [Lupinus albus]	[more]
AES88253.2	1.4e-183	77.65	DNA-directed RNA polymerase subunit alpha [Medicago truncatula]	[more]

BLAST of HG10017387 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK3	2.4e-162	94.39	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
Q49KW6	1.1e-140	86.85	DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus...	[more]
Q2PMQ3	1.1e-140	85.91	DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV...	[more]
Q09WY5	2.0e-140	84.28	DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3...	[more]
Q9MTJ3	2.9e-136	84.78	DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=8...	[more]

BLAST of HG10017387 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P6P177	2.9e-195	77.63	Multifunctional fusion protein OS=Rosa chinensis OX=74649 GN=rps11 PE=3 SV=1	[more]
A0A7J6HQR3	4.8e-190	76.34	Plastid-encoded RNA polymerase subunit alpha OS=Cannabis sativa OX=3483 GN=G4B88...	[more]
A0A5C7IG80	2.6e-188	80.74	Plastid-encoded RNA polymerase subunit alpha OS=Acer yangbiense OX=1000413 GN=EZ...	[more]
A0A6A5MQ34	2.7e-185	84.20	Plastid-encoded RNA polymerase subunit alpha OS=Lupinus albus OX=3870 GN=Lal_000...	[more]
G7JH57	6.7e-184	77.65	Plastid-encoded RNA polymerase subunit alpha OS=Medicago truncatula OX=3880 GN=M...	[more]

BLAST of HG10017387 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00740.1	4.2e-130	79.37	RNA polymerase subunit alpha	[more]
ATCG00750.1	6.6e-51	92.04	ribosomal protein S11	[more]
AT3G52580.1	2.2e-06	37.37	Ribosomal protein S11 family protein	[more]
AT2G36160.1	2.9e-06	36.36	Ribosomal protein S11 family protein	[more]
AT3G11510.1	2.9e-06	36.36	Ribosomal protein S11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 107..303 e-value: 5.4E-14 score: 62.5
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 109..296 e-value: 3.3E-10 score: 40.7
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 130..247 e-value: 2.7E-35 score: 122.9
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 130..248
IPR011773	DNA-directed RNA polymerase, alpha subunit	TIGRFAM	TIGR02027	TIGR02027	coord: 113..398 e-value: 1.2E-76 score: 255.7
IPR011773	DNA-directed RNA polymerase, alpha subunit	PANTHER	PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 89..402
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 28..118 e-value: 1.1E-35 score: 122.4
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 11..140 score: 23.232132
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 10..122 e-value: 9.4E-33 score: 115.2
None	No IPR available	GENE3D	1.10.150.20		coord: 339..402 e-value: 1.3E-12 score: 49.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	CDD	cd06928	RNAP_alpha_NTD	coord: 113..300 e-value: 8.39267E-88 score: 263.561
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 24..117
None	No IPR available	SUPERFAMILY	47789	C-terminal domain of RNA polymerase alpha subunit	coord: 341..398
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 137..229 e-value: 7.8E-16 score: 58.4
IPR011260	RNA polymerase, alpha subunit, C-terminal	PFAM	PF03118	RNA_pol_A_CTD	coord: 336..398 e-value: 2.6E-13 score: 49.5
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 111..302

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017387.1	HG10017387.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome