HG10017309 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017309
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	kinetochore protein SPC24 homolog
Location	Chr03: 12999925 .. 13000385 (+)
RNA-Seq Expression	HG10017309
Synteny	HG10017309

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATTTTGCCTCAAAGTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCACTTGACGTTCAAACCTTGAATCAATGTCTCGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAGTTCAAGGTATATTGTCTTTGTTTCTCTAAAATGGGTTGTATTTATAATCGTTTCGAGGTTCGAAATATTGGGTCTTTTGGGGTTGAGTGAACTATGGGAGTTGATTTCATTTAATTTGTTTAACAAGTTATTAAACGAATCAGATTATGAGAATAAAATTAAGGCATGCCGGCAGAAAACAGAAGAGGCGAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGATAA

mRNA sequence

ATGGGAGATTTTGCCTCAAAGTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCACTTGACGTTCAAACCTTGAATCAATGTCTCGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAGTTCAAGATTATGAGAATAAAATTAAGGCATGCCGGCAGAAAACAGAAGAGGCGAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGATAA

Coding sequence (CDS)

ATGGGAGATTTTGCCTCAAAGTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCACTTGACGTTCAAACCTTGAATCAATGTCTCGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAGTTCAAGATTATGAGAATAAAATTAAGGCATGCCGGCAGAAAACAGAAGAGGCGAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGATAA

Protein sequence

MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR

Homology

[Close]

BLAST of HG10017309 vs. NCBI nr
Match: XP_038883770.1 (kinetochore protein SPC24 homolog [Benincasa hispida])

HSP 1 Score: 184.1 bits (466), Expect = 6.3e-43
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           MGDF S+S+IE FISFADDLV LLKDP DVQ LNQCLEHFKALQSSCDDDFSSVQSLVQD
Sbjct: 1   MGDFVSESNIEAFISFADDLVALLKDPFDVQDLNQCLEHFKALQSSCDDDFSSVQSLVQD 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KIKAC+QKTEEAKANTV DDEM ILEKEL+EEVGKGHLLMEEIR
Sbjct: 61  YEKKIKACQQKTEEAKANTVTDDEMVILEKELDEEVGKGHLLMEEIR 107

[Close]

BLAST of HG10017309 vs. NCBI nr
Match: KAA0037730.1 (uncharacterized protein E6C27_scaffold141G00230 [Cucumis melo var. makuwa] >TYK10931.1 uncharacterized protein E5676_scaffold107G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-41
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           MGDFA+ S+IEE  SFADDLV +LKDP DV  LNQCLEHFK LQSSCDDDF+SVQS V+D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KIKACR+KTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 107

[Close]

BLAST of HG10017309 vs. NCBI nr
Match: XP_008464222.1 (PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-41
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           MGDFA+ S+IEE  SFADDLV +LKDP DV  LNQCLEHFK LQSSCDDDF+SVQS V+D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KIKACR+KTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 107

[Close]

BLAST of HG10017309 vs. NCBI nr
Match: XP_004148609.1 (kinetochore protein SPC24 homolog [Cucumis sativus] >KAE8649568.1 hypothetical protein Csa_017916 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 4.5e-41
Identity = 89/107 (83.18%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           MGDFA+ S+IEE  SFADDLV +LKDP DV+ LNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KIKACR+KTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 107

[Close]

BLAST of HG10017309 vs. NCBI nr
Match: XP_022978290.1 (uncharacterized protein LOC111478320 [Cucurbita maxima])

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 83/107 (77.57%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           M DFA K +IEE +S+ DDLV LL D  DVQTLNQCLEHFK LQSSC DDFS+VQS VQD
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KI+ACRQKTEEAKA+TVADDE++ILEKEL EE+GKG+LLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIR 107

[Close]

BLAST of HG10017309 vs. ExPASy Swiss-Prot
Match: Q67XT3 (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-16
Identity = 43/107 (40.19%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           MG+ +   DIE+ +S+ DDL+ LL        ++Q  E FKAL  +C +DF+ +Q  ++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
            + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +   L +E+R
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELR 107

[Close]

BLAST of HG10017309 vs. ExPASy TrEMBL
Match: A0A5D3CGK0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00110 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.8e-42
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           MGDFA+ S+IEE  SFADDLV +LKDP DV  LNQCLEHFK LQSSCDDDF+SVQS V+D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KIKACR+KTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 107

[Close]

BLAST of HG10017309 vs. ExPASy TrEMBL
Match: A0A1S3CKZ4 (uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.8e-42
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           MGDFA+ S+IEE  SFADDLV +LKDP DV  LNQCLEHFK LQSSCDDDF+SVQS V+D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KIKACR+KTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 107

[Close]

BLAST of HG10017309 vs. ExPASy TrEMBL
Match: A0A0A0L002 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312810 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.2e-41
Identity = 89/107 (83.18%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           MGDFA+ S+IEE  SFADDLV +LKDP DV+ LNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KIKACR+KTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 107

[Close]

BLAST of HG10017309 vs. ExPASy TrEMBL
Match: A0A6J1IPN8 (uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.0e-36
Identity = 83/107 (77.57%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           M DFA K +IEE +S+ DDLV LL D  DVQTLNQCLEHFK LQSSC DDFS+VQS VQD
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KI+ACRQKTEEAKA+TVADDE++ILEKEL EE+GKG+LLMEEIR
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIR 107

[Close]

BLAST of HG10017309 vs. ExPASy TrEMBL
Match: A0A6J1GFS1 (uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC111453528 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 80/107 (74.77%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           M DFA K +IEE +S+ DDLV LL D  DVQTLNQCLEHFK LQSSC DDFS+VQS VQD
Sbjct: 1   MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KI+ACRQKTEEA+ +TV+DDE++ILEKEL EE+GKG+LLMEEIR
Sbjct: 61  YEKKIEACRQKTEEARTSTVSDDEIDILEKELGEELGKGNLLMEEIR 107

[Close]

BLAST of HG10017309 vs. TAIR 10
Match: AT3G08880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-17
Identity = 43/107 (40.19%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQD 60
           MG+ +   DIE+ +S+ DDL+ LL        ++Q  E FKAL  +C +DF+ +Q  ++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
            + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +   L +E+R
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELR 107

[Close]

BLAST of HG10017309 vs. TAIR 10
Match: AT5G01570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 9.4e-13
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 9   DIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKAC 68
           + E  IS+ D+L+ +L D      L Q LE  +A+  SCD+DF  +   +QD + K+  C
Sbjct: 7   NFEMVISWGDELIHVLDDRKGFDVLVQTLEQLRAIPFSCDEDFKEIHESLQDLQKKLDVC 66

Query: 69  RQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           ++KT+EA +    ++E+E L+KEL+EE+     L EE+R
Sbjct: 67  KEKTDEANSEIADEEEIERLQKELDEELELECKLKEELR 105

The following BLAST results are available for this feature:

BLAST of HG10017309 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883770.1	6.3e-43	88.79	kinetochore protein SPC24 homolog [Benincasa hispida]	[more]
KAA0037730.1	2.0e-41	85.05	uncharacterized protein E6C27_scaffold141G00230 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_008464222.1	2.0e-41	85.05	PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo]	[more]
XP_004148609.1	4.5e-41	83.18	kinetochore protein SPC24 homolog [Cucumis sativus] >KAE8649568.1 hypothetical p...	[more]
XP_022978290.1	1.7e-35	77.57	uncharacterized protein LOC111478320 [Cucurbita maxima]	[more]

BLAST of HG10017309 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XT3	4.0e-16	40.19	Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ...	[more]

BLAST of HG10017309 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGK0	9.8e-42	85.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKZ4	9.8e-42	85.05	uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=...	[more]
A0A0A0L002	2.2e-41	83.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312810 PE=4 SV=1	[more]
A0A6J1IPN8	8.0e-36	77.57	uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320...	[more]
A0A6J1GFS1	1.2e-34	74.77	uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]

BLAST of HG10017309 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08880.1	2.8e-17	40.19	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G01570.1	9.4e-13	37.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..98
None	No IPR available	PANTHER	PTHR35730:SF2	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..107
IPR044951	Kinetochore protein SPC24-like	PANTHER	PTHR35730	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017309.1	HG10017309.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051983	regulation of chromosome segregation