HG10017289 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017289
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	High mobility group B protein 1
Location	Chr03: 12674913 .. 12676428 (+)
RNA-Seq Expression	HG10017289
Synteny	HG10017289

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCCAAAGAAGCTTTGAAGCCAGTCGATGATAGGTAGTTTTTTGCCTATTGTTCCACTACATTTCTCTTATGTTATTGATAAAACTTTGGAAATTGCTGGGTTATAATTGTCTGCGATCCATAGTTAGCATCTTTTTTTGGAGTATCAAATTTCCAGCCAGATTTTGAGTTCTATTGATGTCTAATATCCACATACTTGGTGATGTGTATACAGCGTTTACAGGAATTTTCTAGTGACGGATCATAAATATCTCTATTCTTTTCAGAAAGGTTGGGAAGCGAAAGGCTGCCGTCAAAGCTGACAAGGGTATCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCCCCGAGCGCTTTCTTTGTTTTCCTGTTCGTATTTGTTTTCTTATCATTTTGTTTTCAGGCTACAAAAACTCTTTGTTTGATTTCCTTTAGGAAGAAAATTCTCTTATTTGTTTAAATTTTGTATAACAGTGAGGAGTTCAGAAAGGAGTACAAAAGGGACAATCCTAATGTGAAGGCAGTATCTGCAGTATGTTATCTGTGTGATTGTTCTAAAGATTCACAGAACTGGATATGCCAATATCGAGCGAATTTAAATTGTTAACATTTCCTCCACACCTGCAGGTCGGAAAAGCTGGAGGAGAGAGGTGGAAATCCTTGAGTCATGCTGTAAGTATTGTTGTGTATTACATAAAAATGGAAGCAGGCTTAAAATCCTCTAGTCATTTCCTCTTTCCTTCATGTATGTATGATGTTGATGAAGGAAACTCTGTTTCTAAAGGTGTGACATTTGTGTTGATTTCTTGAAACTCTATCTTGTCTTTGGATTAGTGTCAGTTTCAGCAGTCTCACATTCAATTTCAAGTTTCTGCGGTCTCGTAATAATTTGTTTGCCTCTGTATTGATATTTTCTTACAACCAGCGTTGGGCAATATTCCTTATTAACCATTTATACTTTTATTCTCTAACAGTTTTTTATTTGTTGGGTTTTTACTTAATAATAACTTCATGGTTTAAAGGAAAAAGCACCATATGAAGCCAAGGCGGCTAAGAGGAAGGCTGAATACGAAAAGCTTATCAGGGCATATGACAGCAAGAAGGTAGGCATGCTCTGTATTTTGTGTATTGATCAAATTTATAAGACAACATGACCGTGAACTTACACCGTTCTTTTCGGGAATATAGGCTAGCGCAGCAGATGACGAAGAATCAGAGAGATCGAAATCTGAAGTGAACGACGAAGATGAGGCCAGTGAGGAGGTATTTTTTATACATAACAAGGAAATACTTCAATGCTTGTACTTAGAGTTAATTCAGATCCTTTCTGCCGTTTTTCATGCGCATATTTCATTTTATAAGCCTGCTGATTGTTTGAAGTTGAAAGTAACAAAAATTATACTCTTGGGAGTATTGCCCTCGCAGCCCGATTCGAAAACTGCCCACCACCAATAA

mRNA sequence

ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCCAAAGAAGCTTTGAAGCCAGTCGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCGTCAAAGCTGACAAGGGTATCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCCCCGAGCGCTTTCTTTGTTTTCCTTGAGGAGTTCAGAAAGGAGTACAAAAGGGACAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGAGAGAGGTGGAAATCCTTGAGTCATGCTGAAAAAGCACCATATGAAGCCAAGGCGGCTAAGAGGAAGGCTGAATACGAAAAGCTTATCAGGGCATATGACAGCAAGAAGGCTAGCGCAGCAGATGACGAAGAATCAGAGAGATCGAAATCTGAAGTGAACGACGAAGATGAGGCCAGTGAGGAGGTATTTTTTATACATAACAAGGAAATACTTCAATGCTTGTACTTAGAGTTAATTCAGATCCTTTCTGCCGTTTTTCATGCGCATATTTCATTTTATAAGCCTGCTGATTGTTTGAAGTTGAAAGTAACAAAAATTATACTCTTGGGAGTATTGCCCTCGCAGCCCGATTCGAAAACTGCCCACCACCAATAA

Coding sequence (CDS)

ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCCAAAGAAGCTTTGAAGCCAGTCGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCGTCAAAGCTGACAAGGGTATCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCCCCGAGCGCTTTCTTTGTTTTCCTTGAGGAGTTCAGAAAGGAGTACAAAAGGGACAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGAGAGAGGTGGAAATCCTTGAGTCATGCTGAAAAAGCACCATATGAAGCCAAGGCGGCTAAGAGGAAGGCTGAATACGAAAAGCTTATCAGGGCATATGACAGCAAGAAGGCTAGCGCAGCAGATGACGAAGAATCAGAGAGATCGAAATCTGAAGTGAACGACGAAGATGAGGCCAGTGAGGAGGTATTTTTTATACATAACAAGGAAATACTTCAATGCTTGTACTTAGAGTTAATTCAGATCCTTTCTGCCGTTTTTCATGCGCATATTTCATTTTATAAGCCTGCTGATTGTTTGAAGTTGAAAGTAACAAAAATTATACTCTTGGGAGTATTGCCCTCGCAGCCCGATTCGAAAACTGCCCACCACCAATAA

Protein sequence

MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLIRAYDSKKASAADDEESERSKSEVNDEDEASEEVFFIHNKEILQCLYLELIQILSAVFHAHISFYKPADCLKLKVTKIILLGVLPSQPDSKTAHHQ

Homology

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BLAST of HG10017289 vs. NCBI nr
Match: KAA0031875.1 (high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobility group B protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 276.6 bits (706), Expect = 1.9e-70
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA VKADKG KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFRKEYKR+NPNVKAVSAVGKAGGE+WKSLSHAEKAPYEAKAAKRKAEYEKL+
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEVFF 156
           RAYDSKKASAADDEESERSKSEVNDEDEASEEVFF
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEVFF 155

[Close]

BLAST of HG10017289 vs. NCBI nr
Match: XP_011653690.1 (high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility group B protein 1 [Cucumis sativus] >XP_031740703.1 high mobility group B protein 1 [Cucumis sativus] >KGN54377.1 hypothetical protein Csa_017866 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 3.5e-69
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA VKADKGIKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFRKEYKR+NPNVKAVSAVGKAGGE+WKSLSHAEKAPYEAKAAKRKAEYEKL+
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of HG10017289 vs. NCBI nr
Match: XP_008449957.1 (PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDICTED: high mobility group B protein 1 [Cucumis melo])

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-68
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA VKADKG KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFRKEYKR+NPNVKAVSAVGKAGGE+WKSLSHAEKAPYEAKAAKRKAEYEKL+
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of HG10017289 vs. NCBI nr
Match: XP_038883904.1 (high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobility group B protein 1 [Benincasa hispida] >XP_038883906.1 high mobility group B protein 1 [Benincasa hispida])

HSP 1 Score: 269.2 bits (687), Expect = 3.0e-68
Identity = 145/152 (95.39%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKG+ RPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGVNRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFRKEYKR+NPNVKAVSAVGKAGGE+WKSLSHAEKAPYEA+AAKRKAEYEKL+
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEARAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           +AYDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 121 KAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of HG10017289 vs. NCBI nr
Match: XP_022151579.1 (high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobility group B protein 1 [Momordica charantia])

HSP 1 Score: 255.8 bits (652), Expect = 3.4e-64
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAA+KADK  KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFRKE+KRDNP+VKAVSAVGKAGGE+WKSLSHAEKAPYEAKAAK+KAEYEKL+
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKAS   DEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEE 149

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BLAST of HG10017289 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.2e-45
Identity = 105/152 (69.08%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLE+FR  +K++NPNVKAVSAVGKAGG++WKS+S AEKAPYE KAAKRKAEYEK +
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
            AY+      +D  ESE+S+SE+NDEDEAS E
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGE 148

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BLAST of HG10017289 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.7e-30
Identity = 77/129 (59.69%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 24  KVGKRKAAVKADKGIKR---PTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRDNPNV 83
           K GK KA       +K+    TKK  KA KDPNKPKRPPSAFFVF+E+FRK YK  +PN 
Sbjct: 2   KGGKSKAKSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNN 61

Query: 84  KAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLIRAYDSKKAS-AADDEESERS 143
           K+V+ VGKAGG++WK L+ AEKAP+ +KA KRK EYEK ++AY+ K+A+ AA++EES++S
Sbjct: 62  KSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKS 121

Query: 144 KSEVNDEDE 149
           +SEVND+DE
Sbjct: 122 RSEVNDDDE 130

[Close]

BLAST of HG10017289 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-29
Identity = 81/152 (53.29%), Postives = 103/152 (67.76%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K KG S+ +        + K+   K    A KG K+P K   K  KDPNKPKRPPS
Sbjct: 1   MKGGKSKGESKKA--------ETKLAVNKKGAAATKGGKKPAKG--KEPKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVF+ +FR++YK+D+PN K+V+AVGKA GE WKSLS  EKAPY  +A K+K EYE  +
Sbjct: 61  AFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITL 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           +AY+ K     D+E S++SKSEVNDEDE  E+
Sbjct: 121 QAYNKKLEGKDDEEGSDKSKSEVNDEDEDEED 142

[Close]

BLAST of HG10017289 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-29
Identity = 86/154 (55.84%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K K  S+ +   L       V K+ AA KA    ++P  K  KA KDPNKPKRPPS
Sbjct: 1   MKGGKSKTESKRADPKL------AVNKKGAATKA----RKPAGKG-KAAKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVF+EEFRK + +++P  KAVSAVGKA G +WK++S AEKAPY AK+ KRK EYEK +
Sbjct: 61  AFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNM 120

Query: 121 RAYDSKKA---SAADDEESERSKSEVNDEDEASE 152
           RAY+ K+A   +  D+EESE+S SEVNDED+  E
Sbjct: 121 RAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEE 143

[Close]

BLAST of HG10017289 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 88/166 (53.01%), Postives = 109/166 (65.66%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTK-KDLKAKKDPNKPKRPP 60
           MKG+K KG ++                 K AVK+ KG ++P K +  KA KDPNKPKR P
Sbjct: 1   MKGAKSKGAAKAD--------------AKLAVKS-KGAEKPAKGRKGKAGKDPNKPKRAP 60

Query: 61  SAFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKL 120
           SAFFVF+EEFRKE+K  NP  K+V+AVGKA G+RWKSLS ++KAPY AKA K K EY K 
Sbjct: 61  SAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKA 120

Query: 121 IRAYDSKKASAA-----------DDEESERSKSEVNDED--EASEE 153
           I AY+  +++AA           D+EES++SKSEVNDED  E SEE
Sbjct: 121 IAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEGSEE 151

[Close]

BLAST of HG10017289 vs. ExPASy TrEMBL
Match: A0A5A7SRU9 (High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold994G00070 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 9.0e-71
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA VKADKG KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFRKEYKR+NPNVKAVSAVGKAGGE+WKSLSHAEKAPYEAKAAKRKAEYEKL+
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEVFF 156
           RAYDSKKASAADDEESERSKSEVNDEDEASEEVFF
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEVFF 155

[Close]

BLAST of HG10017289 vs. ExPASy TrEMBL
Match: A0A0A0L1B2 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.7e-69
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA VKADKGIKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFRKEYKR+NPNVKAVSAVGKAGGE+WKSLSHAEKAPYEAKAAKRKAEYEKL+
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of HG10017289 vs. ExPASy TrEMBL
Match: A0A1S3BML2 (high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.5e-69
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA VKADKG KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFRKEYKR+NPNVKAVSAVGKAGGE+WKSLSHAEKAPYEAKAAKRKAEYEKL+
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of HG10017289 vs. ExPASy TrEMBL
Match: A0A6J1DBK9 (high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.7e-64
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAA+KADK  KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFRKE+KRDNP+VKAVSAVGKAGGE+WKSLSHAEKAPYEAKAAK+KAEYEKL+
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKAS   DEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEE 149

[Close]

BLAST of HG10017289 vs. ExPASy TrEMBL
Match: A0A6J1ISM4 (high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.4e-63
Identity = 137/152 (90.13%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKG KGKGTSRVSKEALKPVDDRKVGKRKAA+KADKGIKRPTKK+LKA KDPNKPKRPPS
Sbjct: 1   MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLEEFR+EYKR+NPNVKAVSAVGKAGG+RW+SL+H EKAPYEAKAAKRKAEYEKL+
Sbjct: 61  AFFVFLEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKAS ADDEE ERSKSEVN ED+ASEE
Sbjct: 121 RAYDSKKASEADDEELERSKSEVNGEDDASEE 152

[Close]

BLAST of HG10017289 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 185.7 bits (470), Expect = 4.0e-47
Identity = 109/164 (66.46%), Postives = 132/164 (80.49%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLE+FR  +K++NPNVKAVSAVGKAGG++WKS+S AEKAPYE KAAKRKAEYEK +
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEVFF-IHNKEILQ 164
            AY+      +D  ESE+S+SE+NDEDEAS EV   + N+E+L+
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEVTIPLSNEELLE 160

[Close]

BLAST of HG10017289 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 181.8 bits (460), Expect = 5.8e-46
Identity = 105/152 (69.08%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLE+FR  +K++NPNVKAVSAVGKAGG++WKS+S AEKAPYE KAAKRKAEYEK +
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
            AY+      +D  ESE+S+SE+NDEDEAS E
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGE 148

[Close]

BLAST of HG10017289 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 181.8 bits (460), Expect = 5.8e-46
Identity = 105/152 (69.08%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLE+FR  +K++NPNVKAVSAVGKAGG++WKS+S AEKAPYE KAAKRKAEYEK +
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
            AY+      +D  ESE+S+SE+NDEDEAS E
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGE 148

[Close]

BLAST of HG10017289 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 181.8 bits (460), Expect = 5.8e-46
Identity = 105/152 (69.08%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K  KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVFLE+FR  +K++NPNVKAVSAVGKAGG++WKS+S AEKAPYE KAAKRKAEYEK +
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
            AY+      +D  ESE+S+SE+NDEDEAS E
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGE 148

[Close]

BLAST of HG10017289 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-29
Identity = 77/152 (50.66%), Postives = 102/152 (67.11%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60
           MKG+K K  +R SK ++     +  G+ KAA                  KDPNKPKRP S
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAA-----------------KDPNKPKRPAS 60

Query: 61  AFFVFLEEFRKEYKRDNPNVKAVSAVGKAGGERWKSLSHAEKAPYEAKAAKRKAEYEKLI 120
           AFFVF+E+FR+ +K++NP  K+V+ VGKA G++WKSLS +EKAPY AKA KRK EYEK I
Sbjct: 61  AFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNI 120

Query: 121 RAYDSK-KASAADDEESERSKSEVNDEDEASE 152
           +AY+ K +    +DEES++S SEVNDED+A +
Sbjct: 121 KAYNKKLEEGPKEDEESDKSVSEVNDEDDAED 135

The following BLAST results are available for this feature:

BLAST of HG10017289 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031875.1	1.9e-70	96.77	high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobi...	[more]
XP_011653690.1	3.5e-69	97.37	high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility ...	[more]
XP_008449957.1	1.3e-68	96.71	PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDIC...	[more]
XP_038883904.1	3.0e-68	95.39	high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobilit...	[more]
XP_022151579.1	3.4e-64	92.76	high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobil...	[more]

BLAST of HG10017289 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	8.2e-45	69.08	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P40619	9.7e-30	59.69	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P40620	1.3e-29	53.29	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
P26585	1.7e-29	55.84	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P27347	1.1e-28	53.01	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of HG10017289 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRU9	9.0e-71	96.77	High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0L1B2	1.7e-69	97.37	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=...	[more]
A0A1S3BML2	6.5e-69	96.71	high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=...	[more]
A0A6J1DBK9	1.7e-64	92.76	high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 P...	[more]
A0A6J1ISM4	1.4e-63	90.13	high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326...	[more]

BLAST of HG10017289 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.2	4.0e-47	66.46	high mobility group B1	[more]
AT3G51880.1	5.8e-46	69.08	high mobility group B1	[more]
AT3G51880.3	5.8e-46	69.08	high mobility group B1	[more]
AT3G51880.4	5.8e-46	69.08	high mobility group B1	[more]
AT1G20693.1	5.0e-29	50.66	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 54..125 e-value: 6.3E-25 score: 98.8
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 55..123 e-value: 1.2E-22 score: 80.0
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 55..124 score: 19.465244
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 38..140 e-value: 2.4E-25 score: 90.7
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 41..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	PANTHER	PTHR46261:SF1	HIGH MOBILITY GROUP B PROTEIN 1	coord: 1..155
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 55..118 e-value: 1.93305E-18 score: 74.2013
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017289.1	HG10017289.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin