HG10017277 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017277
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr03: 12567460 .. 12569954 (+)
RNA-Seq Expression	HG10017277
Synteny	HG10017277

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTGCCGCCGCAACCTCCTCCTTCATCGGAACACGCCTCGCCGAATTGCGGCCGAGTTCCGGCCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAAAAGAGTCCGGCGAAGAAATCGCCGTCTTCAAAGACGATACCCGACCGGCCGCTGTGGTTTCCAGGAGCCAAAGCGCCGGAATGGCTGGACGGAAGCTTGGTAGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCGGAGTATTTGCAGTATGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGACATAATCGGGACGAGATTTGAGAGTGCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAGCTGATCCATGGAAGGTGGGCAATGCTGGCCACACTCGGTGCTCTCTCTGTTGAAGGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTGAGTTTTCTTTTTCTTTTTTTCATTTCTATTTACTTTTTTTCCGTTTAAGAAATAATCCATTAAATTACAATTTCAAATAAAATAAAAATAAAAGCTTAGTAAAAATGTAGATAATCAAAATGTCTAGGCAGTTGGAGTTAATAGTAGATATTTCACATTTTTATAACTATATTTGTTTTGTGGAAATATTTTTACATATATTTAAGTATACTTGAATAATTAATTGTGTTTGATGTGTAGGATTTTTATTTGAAAATGCATTAAATTTATCTAATATTCCATAAATTTTTTTTTACGACTATTCATTAATGTATAATTAATTTAATATAATTTGTACTTACATAGCATATTTATTTTTATTAATTTAATTTTTTAAAATTAATATAATTTATTATTTTATTCAACAAAATAATATATATAAATTTAAGATGTTTTTATATAATAAATATTAATTTGAATTTGAATATAACTCATGTTTCAAGAGGGCAACCTAGGATGATTGAGGAGTTCCATATGTCATAGCATCTTACGTTACCGTAAAACAAATCGATACTCACTCATAGAAATTTTAGATTCCAATGAAATAAATAGCTCCTTAAAAAAATTATTCAACTTTTAGAAAATCATTTGCAAAAGGGGCTTAAATGATTAGAGTCTAAATTTTCAATTTTGTGATTAATTATTCTATGAGACATAAATTTCATGTCTAATGTAACTATAAATTTTTAATTTTTTTTTTTGTTTAATAGCTAATTAGAATGTTTAAATATAAATTTTTAATTTTAAAATTTTAAAAATTAAATGGATACAGACGAACTAAGCTTATTATTTAACCTAAATAGTAACATAAATATATACTTTTAACTTTTTGGTTTTTTACCAAACTGTCCTAATGAAAATACAATTCAAATTCAAATACAAAACAAAATGACAATTCAAATACAAAACAAAATGCAACAAGAAAAGTAACCTGTAAAAAACTAAAAGAAATAACATTCCTTTTATGTTATTAAGTGAAAATTTTGTTTCACTATTAGAATTTATAAACTTTAAAGCTTATGTCATTGTTATACAATAATAATTTTGACATTTATTTGTTAATTTTTTTTATAGAATTTCTCATAATAGGATCAAATTGTTAATGTTTTGGAAGAATATGGATGAAATAGTTACTTCCTTGTTTGGGACAAATTGCTACAAATTTGAGAATACAATAACGTAATAATTTCAAATTAAATTTCAATCAAAATCAACTTGCTAAAAGAATATTTGGTTAAATTAGAAAATTAGCTGTTAAACTTTTAAATTTGTGTCTATTTAATTCAAAAACTTTGAAAAATGTCTATCTAACAAGCTCTCGAGCTTTCAATTTTCTGTCCAATAAAACTAAACTTTAAAAATGTGTCTAATAAGTATTTGAATTACCAATTTTATGACTAATAGATCTTCAACTGTTCAACATCTTTTTAAAAGTAAAAATATTAAGAAATCTATCCTAAATATGTCAAAAACTCAGTAAGCACAAAATTAAATGTTCAAGCTCAAGTTCATAAATTGATTAAACGCGTTGTGAAGTTGATAAGACTTTCTAGACACAAACTTGAACGATTAATGATTCGATGAACTAAAAATTTCAGGTAGAATTAGTAGAAGGTTCGTCCTACCTAGGGCAACCACTTCCCTTCTCCATCACCACATTGATATGGATCGAAGTTCTAGTGATTGGATACATTGAGTTCCAAAGGAATGCCGAGCTCGACCCAGAGAAGAGGTTGTACCCAGGAGGCAAGTTTTTCGACCCCTTGGGCTTGGCTGAGGATCCAGAAAAGAAAGCCGTGCTACAATTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTCGGGTTCGCGGTTCAGGCTGCTGTCACTGGCAAAGGCCCACTCAACAACTGGGCTACCCATCTTAGTGACCCTCTCCACACCACTATTATTGACAACTTCTCTTCTTAA

mRNA sequence

ATGGCAACTGCCGCCGCAACCTCCTCCTTCATCGGAACACGCCTCGCCGAATTGCGGCCGAGTTCCGGCCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAAAAGAGTCCGGCGAAGAAATCGCCGTCTTCAAAGACGATACCCGACCGGCCGCTGTGGTTTCCAGGAGCCAAAGCGCCGGAATGGCTGGACGGAAGCTTGGTAGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCGGAGTATTTGCAGTATGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGACATAATCGGGACGAGATTTGAGAGTGCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAGCTGATCCATGGAAGGTGGGCAATGCTGGCCACACTCGGTGCTCTCTCTGTTGAAGGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTAGAATTAGTAGAAGGTTCGTCCTACCTAGGGCAACCACTTCCCTTCTCCATCACCACATTGATATGGATCGAAGTTCTAGTGATTGGATACATTGAGTTCCAAAGGAATGCCGAGCTCGACCCAGAGAAGAGGTTGTACCCAGGAGGCAAGTTTTTCGACCCCTTGGGCTTGGCTGAGGATCCAGAAAAGAAAGCCGTGCTACAATTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTCGGGTTCGCGGTTCAGGCTGCTGTCACTGGCAAAGGCCCACTCAACAACTGGGCTACCCATCTTAGTGACCCTCTCCACACCACTATTATTGACAACTTCTCTTCTTAA

Coding sequence (CDS)

ATGGCAACTGCCGCCGCAACCTCCTCCTTCATCGGAACACGCCTCGCCGAATTGCGGCCGAGTTCCGGCCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAAAAGAGTCCGGCGAAGAAATCGCCGTCTTCAAAGACGATACCCGACCGGCCGCTGTGGTTTCCAGGAGCCAAAGCGCCGGAATGGCTGGACGGAAGCTTGGTAGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCGGAGTATTTGCAGTATGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGACATAATCGGGACGAGATTTGAGAGTGCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAGCTGATCCATGGAAGGTGGGCAATGCTGGCCACACTCGGTGCTCTCTCTGTTGAAGGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTAGAATTAGTAGAAGGTTCGTCCTACCTAGGGCAACCACTTCCCTTCTCCATCACCACATTGATATGGATCGAAGTTCTAGTGATTGGATACATTGAGTTCCAAAGGAATGCCGAGCTCGACCCAGAGAAGAGGTTGTACCCAGGAGGCAAGTTTTTCGACCCCTTGGGCTTGGCTGAGGATCCAGAAAAGAAAGCCGTGCTACAATTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTCGGGTTCGCGGTTCAGGCTGCTGTCACTGGCAAAGGCCCACTCAACAACTGGGCTACCCATCTTAGTGACCCTCTCCACACCACTATTATTGACAACTTCTCTTCTTAA

Protein sequence

MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS

Homology

[Close]

BLAST of HG10017277 vs. NCBI nr
Match: XP_038882769.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 564.3 bits (1453), Expect = 5.9e-157
Identity = 279/284 (98.24%), Postives = 279/284 (98.24%), Query Frame = 0


Query: 1   MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 60
           MATAAATSSFIGTRLAELRP SGRVQARFGFGKKKSP KKSPSSKTI DRPLWFPGAKAP
Sbjct: 1   MATAAATSSFIGTRLAELRPCSGRVQARFGFGKKKSPPKKSPSSKTISDRPLWFPGAKAP 60

Query: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120
           EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ
Sbjct: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120

Query: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 180
           PYTEVFGLQRFRECELIHGRWAMLATLGALSVE LTGVTWQDAGKVELVEGSSYLGQPLP
Sbjct: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLP 180

Query: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240
           FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKK VLQLAEIKH
Sbjct: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKVVLQLAEIKH 240

Query: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of HG10017277 vs. NCBI nr
Match: XP_004147887.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Cucumis sativus] >KGN54365.1 hypothetical protein Csa_017948 [Cucumis sativus])

HSP 1 Score: 561.2 bits (1445), Expect = 5.0e-156
Identity = 277/284 (97.54%), Postives = 279/284 (98.24%), Query Frame = 0


Query: 1   MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 60
           MATAAATSSF+GTRLAE+ PSSGRVQARFGFGKKKSP KKSPSSK I DRPLWFPGAKAP
Sbjct: 1   MATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAP 60

Query: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120
           EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ
Sbjct: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120

Query: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 180
           PYTEVFGLQRFRECELIHGRWAMLATLGALSVE LTGVTWQDAGKVELVEGSSYLGQPLP
Sbjct: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLP 180

Query: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240
           FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH
Sbjct: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240

Query: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of HG10017277 vs. NCBI nr
Match: XP_008449241.1 (PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis melo] >KAA0045037.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa] >TYJ96289.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa])

HSP 1 Score: 560.5 bits (1443), Expect = 8.6e-156
Identity = 277/284 (97.54%), Postives = 279/284 (98.24%), Query Frame = 0


Query: 1   MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 60
           MATAAATSSFIGTRLAE+ PSSGRVQARFGFGKKKSP KKSPSSK I DRPLWFPGAKAP
Sbjct: 1   MATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAP 60

Query: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120
           EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ
Sbjct: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120

Query: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 180
           PYTEVFGLQRFRECELIHGRWAMLATLGALSVE LTGVTWQDAGKVELVEGSSYLGQPLP
Sbjct: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLP 180

Query: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240
           FS+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH
Sbjct: 181 FSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240

Query: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of HG10017277 vs. NCBI nr
Match: XP_022978220.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 559.7 bits (1441), Expect = 1.5e-155
Identity = 272/283 (96.11%), Postives = 281/283 (99.29%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAPE 61
           ATAAATSSFIGTRL ++RPSSGRVQARFGFGKKK+PAKKSPSSKTI DRPLWFPGAKAPE
Sbjct: 4   ATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPE 63

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+A+VKSTPFQP
Sbjct: 64  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTPFQP 123

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           Y+EVFGLQRFRECELIHGRWAMLATLGAL+VEGLTG+TWQDAGKVELVEGSSYLGQPLPF
Sbjct: 124 YSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPF 183

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           S+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 184 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 243

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 244 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of HG10017277 vs. NCBI nr
Match: XP_022950626.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 558.5 bits (1438), Expect = 3.3e-155
Identity = 272/283 (96.11%), Postives = 280/283 (98.94%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAPE 61
           ATAAATSSFIGTRL ++RPSS RVQARFGFGKKK+PAKKSPSSKTI DRPLWFPGAKAPE
Sbjct: 4   ATAAATSSFIGTRLVDVRPSSARVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPE 63

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESA+VKSTPFQP
Sbjct: 64  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESADVKSTPFQP 123

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           Y+EVFGLQRFRECELIHGRWAMLATLGAL+VEGLTG+TWQDAGKVELVEGSSYLGQPLPF
Sbjct: 124 YSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPF 183

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           S+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 184 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 243

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 244 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of HG10017277 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 2.7e-136
Identity = 238/284 (83.80%), Postives = 255/284 (89.79%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLAE-LRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 61
           A AAA SS +GTR+A  + P SGR  A FGFGKKK+  KKS       DRPLW+PGA +P
Sbjct: 6   AAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISP 65

Query: 62  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 121
           +WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E+A+ KSTPFQ
Sbjct: 66  DWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQ 125

Query: 122 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 181
           PY+EVFG+QRFRECELIHGRWAMLATLGALSVE LTGVTWQDAGKVELV+GSSYLGQPLP
Sbjct: 126 PYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLP 185

Query: 182 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 241
           FSI+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DPEK A LQLAEIKH
Sbjct: 186 FSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKH 245

Query: 242 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 246 ARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289

[Close]

BLAST of HG10017277 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 3.1e-132
Identity = 233/284 (82.04%), Postives = 256/284 (90.14%), Query Frame = 0


Query: 2   ATAAATSSFIGTR-LAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 61
           +TAAA SS +GTR ++++  +S R  ARFGFG KK+  KK+ +   I DRPLWFPGAK+P
Sbjct: 5   STAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPGAKSP 64

Query: 62  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 121
           E+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E+ + KSTPFQ
Sbjct: 65  EYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQ 124

Query: 122 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 181
           PY+EVFGLQRFRECELIHGRWAMLATLGA++VE LTGVTWQDAGKVELV+GSSYLGQPLP
Sbjct: 125 PYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLP 184

Query: 182 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 241
           FSI+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DP KKA LQLAEIKH
Sbjct: 185 FSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKH 244

Query: 242 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 245 ARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286

[Close]

BLAST of HG10017277 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 1.1e-113
Identity = 205/270 (75.93%), Postives = 228/270 (84.44%), Query Frame = 0


Query: 3   TAAATSSFIGTRLAELRPSSGRVQARFG--FGKKK--SPAKKSPSSKTIPDRPLWFPGAK 62
           TAAA S   G R+ + RP +GRVQARFG  FGKKK   P KKS   +   DR +WFPGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 63  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTP 122
            PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   ES+E+K TP
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 123 FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQP 182
           FQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVELVEGSSYLGQP
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184

Query: 183 LPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 242
           LPFS+TTLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG +FDPLGLA DPEK   L+LAEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 244

Query: 243 KHARLAMVAFLGFAVQAAVTGKGPLNNWAT 269
           KH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 245 KHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of HG10017277 vs. ExPASy Swiss-Prot
Match: Q93WD2 (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-65
Identity = 132/225 (58.67%), Postives = 157/225 (69.78%), Query Frame = 0


Query: 52  LWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFES 111
           LW P    PEWLDGSL GD GFDP GL KP+E++   +D  DQN AKN  G +       
Sbjct: 52  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSV------E 111

Query: 112 AEVKSTP--------FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDA 171
           A V++TP          PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TGV+W +A
Sbjct: 112 AIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEA 171

Query: 172 GKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGL 231
           GKVEL +G+SY G  LPFSIT LIWIEV+++G  EF RN+E +PEKR YPGG  FDPL L
Sbjct: 172 GKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKL 231

Query: 232 AEDPEKKAV-LQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWA 268
           A + E++A  L+ AEIKHARLAMV+F G+ VQA  TG+G L + A
Sbjct: 232 ASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268

[Close]

BLAST of HG10017277 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.8e-39
Identity = 97/233 (41.63%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 53  WFPGAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDLDSLDQNLAKNVAGDIIGTRFES 112
           W PG   P +LDGS  GD+GFDP GLG+ PA                             
Sbjct: 48  WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA----------------------------- 107

Query: 113 AEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEG 172
                           L+R++E ELIH RWAMLA  G L  E L    W  A +   + G
Sbjct: 108 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 167

Query: 173 --SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPE 232
             ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG  FDPLG ++DP+
Sbjct: 168 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPK 227

Query: 233 KKAVLQLAEIKHARLAMVAFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 281
           K   L++ EIK+ RLA++AF+GF V Q+A  G GPL N ATHL+DP H  I D
Sbjct: 228 KLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235

[Close]

BLAST of HG10017277 vs. ExPASy TrEMBL
Match: A0A0A0KXI3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G308550 PE=3 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 2.4e-156
Identity = 277/284 (97.54%), Postives = 279/284 (98.24%), Query Frame = 0


Query: 1   MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 60
           MATAAATSSF+GTRLAE+ PSSGRVQARFGFGKKKSP KKSPSSK I DRPLWFPGAKAP
Sbjct: 1   MATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAP 60

Query: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120
           EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ
Sbjct: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120

Query: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 180
           PYTEVFGLQRFRECELIHGRWAMLATLGALSVE LTGVTWQDAGKVELVEGSSYLGQPLP
Sbjct: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLP 180

Query: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240
           FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH
Sbjct: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240

Query: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of HG10017277 vs. ExPASy TrEMBL
Match: A0A5D3BBB3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00840 PE=3 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 4.1e-156
Identity = 277/284 (97.54%), Postives = 279/284 (98.24%), Query Frame = 0


Query: 1   MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 60
           MATAAATSSFIGTRLAE+ PSSGRVQARFGFGKKKSP KKSPSSK I DRPLWFPGAKAP
Sbjct: 1   MATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAP 60

Query: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120
           EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ
Sbjct: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120

Query: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 180
           PYTEVFGLQRFRECELIHGRWAMLATLGALSVE LTGVTWQDAGKVELVEGSSYLGQPLP
Sbjct: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLP 180

Query: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240
           FS+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH
Sbjct: 181 FSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240

Query: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of HG10017277 vs. ExPASy TrEMBL
Match: A0A1S3BMH8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491174 PE=3 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 4.1e-156
Identity = 277/284 (97.54%), Postives = 279/284 (98.24%), Query Frame = 0


Query: 1   MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 60
           MATAAATSSFIGTRLAE+ PSSGRVQARFGFGKKKSP KKSPSSK I DRPLWFPGAKAP
Sbjct: 1   MATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAP 60

Query: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120
           EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ
Sbjct: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 120

Query: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 180
           PYTEVFGLQRFRECELIHGRWAMLATLGALSVE LTGVTWQDAGKVELVEGSSYLGQPLP
Sbjct: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLP 180

Query: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240
           FS+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH
Sbjct: 181 FSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240

Query: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of HG10017277 vs. ExPASy TrEMBL
Match: A0A6J1IPG0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478268 PE=3 SV=1)

HSP 1 Score: 559.7 bits (1441), Expect = 7.1e-156
Identity = 272/283 (96.11%), Postives = 281/283 (99.29%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAPE 61
           ATAAATSSFIGTRL ++RPSSGRVQARFGFGKKK+PAKKSPSSKTI DRPLWFPGAKAPE
Sbjct: 4   ATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPE 63

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+A+VKSTPFQP
Sbjct: 64  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTPFQP 123

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           Y+EVFGLQRFRECELIHGRWAMLATLGAL+VEGLTG+TWQDAGKVELVEGSSYLGQPLPF
Sbjct: 124 YSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPF 183

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           S+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 184 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 243

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 244 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of HG10017277 vs. ExPASy TrEMBL
Match: A0A6J1GFC4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111453669 PE=3 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.6e-155
Identity = 272/283 (96.11%), Postives = 280/283 (98.94%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAPE 61
           ATAAATSSFIGTRL ++RPSS RVQARFGFGKKK+PAKKSPSSKTI DRPLWFPGAKAPE
Sbjct: 4   ATAAATSSFIGTRLVDVRPSSARVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPE 63

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESA+VKSTPFQP
Sbjct: 64  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESADVKSTPFQP 123

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           Y+EVFGLQRFRECELIHGRWAMLATLGAL+VEGLTG+TWQDAGKVELVEGSSYLGQPLPF
Sbjct: 124 YSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPF 183

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           S+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 184 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 243

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 244 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of HG10017277 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 486.1 bits (1250), Expect = 1.9e-137
Identity = 238/284 (83.80%), Postives = 255/284 (89.79%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLAE-LRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 61
           A AAA SS +GTR+A  + P SGR  A FGFGKKK+  KKS       DRPLW+PGA +P
Sbjct: 6   AAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISP 65

Query: 62  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 121
           +WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E+A+ KSTPFQ
Sbjct: 66  DWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQ 125

Query: 122 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 181
           PY+EVFG+QRFRECELIHGRWAMLATLGALSVE LTGVTWQDAGKVELV+GSSYLGQPLP
Sbjct: 126 PYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLP 185

Query: 182 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 241
           FSI+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DPEK A LQLAEIKH
Sbjct: 186 FSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKH 245

Query: 242 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 246 ARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289

[Close]

BLAST of HG10017277 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 472.6 bits (1215), Expect = 2.2e-133
Identity = 233/284 (82.04%), Postives = 256/284 (90.14%), Query Frame = 0


Query: 2   ATAAATSSFIGTR-LAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 61
           +TAAA SS +GTR ++++  +S R  ARFGFG KK+  KK+ +   I DRPLWFPGAK+P
Sbjct: 5   STAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPGAKSP 64

Query: 62  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 121
           E+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E+ + KSTPFQ
Sbjct: 65  EYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQ 124

Query: 122 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 181
           PY+EVFGLQRFRECELIHGRWAMLATLGA++VE LTGVTWQDAGKVELV+GSSYLGQPLP
Sbjct: 125 PYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLP 184

Query: 182 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 241
           FSI+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DP KKA LQLAEIKH
Sbjct: 185 FSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKH 244

Query: 242 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285
           ARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 245 ARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286

[Close]

BLAST of HG10017277 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 411.0 bits (1055), Expect = 7.8e-115
Identity = 205/270 (75.93%), Postives = 228/270 (84.44%), Query Frame = 0


Query: 3   TAAATSSFIGTRLAELRPSSGRVQARFG--FGKKK--SPAKKSPSSKTIPDRPLWFPGAK 62
           TAAA S   G R+ + RP +GRVQARFG  FGKKK   P KKS   +   DR +WFPGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 63  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTP 122
            PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   ES+E+K TP
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 123 FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQP 182
           FQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVELVEGSSYLGQP
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184

Query: 183 LPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 242
           LPFS+TTLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG +FDPLGLA DPEK   L+LAEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 244

Query: 243 KHARLAMVAFLGFAVQAAVTGKGPLNNWAT 269
           KH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 245 KHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of HG10017277 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-68
Identity = 129/181 (71.27%), Postives = 151/181 (83.43%), Query Frame = 0


Query: 2   ATAAATSSFIGTR-LAELRPSSGRVQARFGFGKKKSPAKKSPSSKTIPDRPLWFPGAKAP 61
           +TAAA SS +GTR ++++  +S R  ARFGFG KK+  KK+ +   I DRPLWFPGAK+P
Sbjct: 5   STAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPGAKSP 64

Query: 62  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQ 121
           E+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E+ + KSTPFQ
Sbjct: 65  EYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQ 124

Query: 122 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVELVEGSSYLGQPLP 181
           PY+EVFGLQRFRECELIHGRWAMLATLGA++VE LTGVTWQDAGKV  +  SS L   L 
Sbjct: 125 PYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVSPLFFSSLLRLCLA 183

[Close]

BLAST of HG10017277 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-66
Identity = 123/169 (72.78%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 3   TAAATSSFIGTRLAELRPSSGRVQARFG--FGKKK--SPAKKSPSSKTIPDRPLWFPGAK 62
           TAAA S   G R+ + RP +GRVQARFG  FGKKK   P KKS   +   DR +WFPGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 63  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTP 122
            PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   ES+E+K TP
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 123 FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEGLTGVTWQDAGKVE 168
           FQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVE
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173

The following BLAST results are available for this feature:

BLAST of HG10017277 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882769.1	5.9e-157	98.24	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]	[more]
XP_004147887.1	5.0e-156	97.54	chlorophyll a-b binding protein CP29.1, chloroplastic [Cucumis sativus] >KGN5436...	[more]
XP_008449241.1	8.6e-156	97.54	PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis m...	[more]
XP_022978220.1	1.5e-155	96.11	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022950626.1	3.3e-155	96.11	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of HG10017277 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	2.7e-136	83.80	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	3.1e-132	82.04	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	1.1e-113	75.93	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q93WD2	1.1e-65	58.67	Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhc...	[more]
Q01667	6.8e-39	41.63	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of HG10017277 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXI3	2.4e-156	97.54	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5D3BBB3	4.1e-156	97.54	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BMH8	4.1e-156	97.54	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1IPG0	7.1e-156	96.11	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GFC4	1.6e-155	96.11	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of HG10017277 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	1.9e-137	83.80	light harvesting complex photosystem II	[more]
AT3G08940.2	2.2e-133	82.04	light harvesting complex photosystem II	[more]
AT2G40100.1	7.8e-115	75.93	light harvesting complex photosystem II	[more]
AT3G08940.1	1.9e-68	71.27	light harvesting complex photosystem II	[more]
AT2G40100.2	1.4e-66	72.78	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 53..284 e-value: 2.8E-69 score: 235.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..255 e-value: 7.7E-51 score: 172.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..50
None	No IPR available	PANTHER	PTHR21649:SF71	CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC	coord: 2..284
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 45..282
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017277.1	HG10017277.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding