HG10017254 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGCTTTAGAGACGGCCGGAGCGGATTTGGAGAAAGGGTGGCGGCAGACGGCGGCGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGAAGGTGAATTTGGAGAGGGATTGTAGGATTTGCCATTTGGGATTAGAAAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCTCATAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGTGAGTTTCGTTTTCAAATCCCAATCCACCCCCTTTTTTTTAATTTCTTCACTAAATGATTCATTATGATGGTTAGAATCATTTTTGTCATGTTTAAAATCGAGATTTTTTTTTTGTAGGAATGATCTATTCTGAGCCACTAAACGATTACTAACTCGCCTTTCGCAAACAAATGAAATCTAACATTATGCTTACGTCAAAGTGCACTATCGTGTTTTATACGGTATCGCATTAGAGATGTTCATGTCTATCGTAGTCTTAATATAATAGGCATGTCTATCGCGATCTTCATTTTTCTCACACTTTGTTGTGCTTTTATTGCGATAGAGTAGAGAAAAATGAAGGATTGTGATAGATATAACCTCGCCCTTTAGGACTACGATAGACATAGACATCACTAATGCGATGTGATATAAAAGACGATAGTAGTGAATGACTATTTGTATTAAAAAAAAAAAATCTTTAATATCATTATGAAAACTCTTTAATTATTTAGGTTAAGTTGTGATGATATAAAATTGTGTTTAAAAGGGCCAAACTAAATACTAAATTGAGTTTTATTGGGAAGGTGGGTGCTTTAATATAGAAATTTGTTATTAGTTGAGTTTTTAATTTAAACTTTTTTTTTTTAGCAAAGCCTAAGAAAGGTATAAAGGGAAAGTTAATAGAAATAATGCTATCTTAGTGAAAAGGAATAGAATTAAGTGAGTGAAGCATTTTTTAAGAAAAAAATTCCTTGAACTTTGTCTCACTTTACTAACTCTCTACCTTGTATTAATTATTCTCTTGCCTTTTATAAACATTGGAATCCTTTCTTGCTTTATTTTTTTAAAATGTATCTTTAATAATTCTAAATCTTTTAGTTTTAATTTGTGTTGAATTGATAACAAAATAAAAGGCTTTTGTGAATTCAAGATCAAGTCTTCTTGCTTGAAAATACAATTTTGGAGGAGAGTTTTAGTTTTTTTAAGCATGTAAATGATATATAACTTGAATATGGTTGGTTTTTTTGTTAGGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAACTTGAACAAATGGAGCAACCCCATGAGTCAAACAATGGGACGGTATCAATGGCCATGGTTGCAGCGTCGGTGGCTGCCGCTCCTAGCGGTGGCCGGAACTTTTGGCATGTTCATCGAGTCCTCAATTTTCTTCTTGTTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTCCATTTCAATATGCCATCATAA ATGGCAGCTTTAGAGACGGCCGGAGCGGATTTGGAGAAAGGGTGGCGGCAGACGGCGGCGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGAAGGTGAATTTGGAGAGGGATTGTAGGATTTGCCATTTGGGATTAGAAAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCTCATAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAACTTGAACAAATGGAGCAACCCCATGAGTCAAACAATGGGACGGTATCAATGGCCATGGTTGCAGCGTCGGTGGCTGCCGCTCCTAGCGGTGGCCGGAACTTTTGGCATGTTCATCGAGTCCTCAATTTTCTTCTTGTTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTCCATTTCAATATGCCATCATAA ATGGCAGCTTTAGAGACGGCCGGAGCGGATTTGGAGAAAGGGTGGCGGCAGACGGCGGCGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGAAGGTGAATTTGGAGAGGGATTGTAGGATTTGCCATTTGGGATTAGAAAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCTCATAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAACTTGAACAAATGGAGCAACCCCATGAGTCAAACAATGGGACGGTATCAATGGCCATGGTTGCAGCGTCGGTGGCTGCCGCTCCTAGCGGTGGCCGGAACTTTTGGCATGTTCATCGAGTCCTCAATTTTCTTCTTGTTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTCCATTTCAATATGCCATCATAA MAALETAGADLEKGWRQTAAAERGSGVGEVKKVNLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHELEQMEQPHESNNGTVSMAMVAASVAAAPSGGRNFWHVHRVLNFLLVCMVFAFVISWLFHFNMPS Homology
BLAST of HG10017254 vs. NCBI nr
Match: XP_038883458.1 (uncharacterized protein LOC120074413 [Benincasa hispida]) HSP 1 Score: 297.7 bits (761), Expect = 6.0e-77 Identity = 148/167 (88.62%), Postives = 151/167 (90.42%), Query Frame = 0
BLAST of HG10017254 vs. NCBI nr
Match: KAG7027374.1 (hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 251.9 bits (642), Expect = 3.8e-63 Identity = 130/166 (78.31%), Postives = 137/166 (82.53%), Query Frame = 0
BLAST of HG10017254 vs. NCBI nr
Match: KAG6595366.1 (hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62 Identity = 129/166 (77.71%), Postives = 135/166 (81.33%), Query Frame = 0
BLAST of HG10017254 vs. NCBI nr
Match: XP_023517920.1 (uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 247.3 bits (630), Expect = 9.4e-62 Identity = 128/166 (77.11%), Postives = 133/166 (80.12%), Query Frame = 0
BLAST of HG10017254 vs. NCBI nr
Match: XP_022151515.1 (uncharacterized protein LOC111019441, partial [Momordica charantia]) HSP 1 Score: 235.7 bits (600), Expect = 2.8e-58 Identity = 117/167 (70.06%), Postives = 132/167 (79.04%), Query Frame = 0
BLAST of HG10017254 vs. ExPASy TrEMBL
Match: A0A6J1DBE4 (uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019441 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58 Identity = 117/167 (70.06%), Postives = 132/167 (79.04%), Query Frame = 0
BLAST of HG10017254 vs. ExPASy TrEMBL
Match: A0A6A3CP99 (Laccase-8-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002942pilonHSYRG00005 PE=4 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 1.5e-49 Identity = 99/144 (68.75%), Postives = 114/144 (79.17%), Query Frame = 0
BLAST of HG10017254 vs. ExPASy TrEMBL
Match: A0A0B0MSH9 (E3 ubiquitin-protein ligase MARCH2 OS=Gossypium arboreum OX=29729 GN=LOC108455880 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48 Identity = 98/144 (68.06%), Postives = 112/144 (77.78%), Query Frame = 0
BLAST of HG10017254 vs. ExPASy TrEMBL
Match: A0A2P5YEN9 (RING-CH-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G171900v1 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48 Identity = 98/144 (68.06%), Postives = 112/144 (77.78%), Query Frame = 0
BLAST of HG10017254 vs. ExPASy TrEMBL
Match: A0A1U8HUU1 (uncharacterized protein LOC107889748 OS=Gossypium hirsutum OX=3635 GN=LOC107889748 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48 Identity = 98/144 (68.06%), Postives = 112/144 (77.78%), Query Frame = 0
BLAST of HG10017254 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 159.8 bits (403), Expect = 1.8e-39 Identity = 77/131 (58.78%), Postives = 94/131 (71.76%), Query Frame = 0
BLAST of HG10017254 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 140.2 bits (352), Expect = 1.5e-33 Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 0
BLAST of HG10017254 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 131.0 bits (328), Expect = 9.1e-31 Identity = 69/137 (50.36%), Postives = 86/137 (62.77%), Query Frame = 0
BLAST of HG10017254 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 114.8 bits (286), Expect = 6.8e-26 Identity = 68/165 (41.21%), Postives = 82/165 (49.70%), Query Frame = 0
BLAST of HG10017254 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 83.6 bits (205), Expect = 1.7e-16 Identity = 42/82 (51.22%), Postives = 48/82 (58.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|