HG10017247 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017247
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 12259616 .. 12260234 (+)
RNA-Seq ExpressionHG10017247
SyntenyHG10017247
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTCTTGGTTTGAATTTCCCGCTATAAACAGAGGAAAATAAATGGGTCTTAACTCGAATAATTTTCAATCTCTTATCCAAAAAAATTGAATCAAGGAAGTTACCTGGGTACGGAATCTGGCCATCTTCAAGAAGCTTGGGAATGGAGAAGAAAAGAAACAAGAAACGGGCGCTGAAAGTAGAGAAACAAAAAACAGGGATACCCAATTCTTGAGCTACATCCATTGGAAAACGAAGAATGACATCTGTAATAACACAAGTGATGGAAGAAGAAGTTTCATTATTGTAGGAGAGGAGAAGTTGTCGGAAGAGGGATTTGGTGACTTGATGCATGGATACAGAGAGCTTTCCGTCGAGAACATTTCGGGGTTGATCCGGAGGGAGGCCGTCGGAAATGGAGTGGAAATGAAGGGAGGGAAGTTGGGGGGAGAGGTGGTGAATGCGGCGGTGGTTGTGGTGGGTGTTGAGGAAGGTGACTTGGAGACCGGCGTTGCAGAGGAGGTGGGCAAGACAGAGGAAGGGTTTGATGTGGCCGTCGGCCGGAAAGGGAAAAAGGAGGACGTGATGATGGGTTTGAGTATGAGAAAGGTCCATGAAAATGGAAGTTTGATCTGA

mRNA sequence

ATGGAGTTCTTGGAAGTTACCTGGGTACGGAATCTGGCCATCTTCAAGAAGCTTGGGAATGGAGAAGAAAAGAAACAAGAAACGGGCGCTGAAAGTAGAGAAACAAAAAACAGGGATACCCAATTCTTGAGCTACATCCATTGGAAAACGAAGAATGACATCTGTAATAACACAAGTGATGGAAGAAGAAGTTTCATTATTGTAGGAGAGGAGAAGTTGTCGGAAGAGGGATTTGGTGACTTGATGCATGGATACAGAGAGCTTTCCGTCGAGAACATTTCGGGGTTGATCCGGAGGGAGGCCGTCGGAAATGGAGTGGAAATGAAGGGAGGGAAGTTGGGGGGAGAGGTGGTGAATGCGGCGGTGGTTGTGGTGGGTGTTGAGGAAGGTGACTTGGAGACCGGCGTTGCAGAGGAGGTGGGCAAGACAGAGGAAGGGTTTGATGTGGCCGTCGGCCGGAAAGGGAAAAAGGAGGACGTGATGATGGGTTTGAGTATGAGAAAGGTCCATGAAAATGGAAGTTTGATCTGA

Coding sequence (CDS)

ATGGAGTTCTTGGAAGTTACCTGGGTACGGAATCTGGCCATCTTCAAGAAGCTTGGGAATGGAGAAGAAAAGAAACAAGAAACGGGCGCTGAAAGTAGAGAAACAAAAAACAGGGATACCCAATTCTTGAGCTACATCCATTGGAAAACGAAGAATGACATCTGTAATAACACAAGTGATGGAAGAAGAAGTTTCATTATTGTAGGAGAGGAGAAGTTGTCGGAAGAGGGATTTGGTGACTTGATGCATGGATACAGAGAGCTTTCCGTCGAGAACATTTCGGGGTTGATCCGGAGGGAGGCCGTCGGAAATGGAGTGGAAATGAAGGGAGGGAAGTTGGGGGGAGAGGTGGTGAATGCGGCGGTGGTTGTGGTGGGTGTTGAGGAAGGTGACTTGGAGACCGGCGTTGCAGAGGAGGTGGGCAAGACAGAGGAAGGGTTTGATGTGGCCGTCGGCCGGAAAGGGAAAAAGGAGGACGTGATGATGGGTTTGAGTATGAGAAAGGTCCATGAAAATGGAAGTTTGATCTGA

Protein sequence

MEFLEVTWVRNLAIFKKLGNGEEKKQETGAESRETKNRDTQFLSYIHWKTKNDICNNTSDGRRSFIIVGEEKLSEEGFGDLMHGYRELSVENISGLIRREAVGNGVEMKGGKLGGEVVNAAVVVVGVEEGDLETGVAEEVGKTEEGFDVAVGRKGKKEDVMMGLSMRKVHENGSLI
Homology
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BLAST of HG10017247 vs. NCBI nr
Match: KAG6603616.1 (17.6 kDa class I heat shock protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.4 bits (503), Expect = 5.3e-47
Identity = 110/151 (72.85%), Postives = 127/151 (84.11%), Query Frame = 0 

Query: 12  LAIFKKLGNGEEKKQETGAESRETKNRDTQFLSYIHWKTKNDICNNTSDG---RRSFIIV 71
           LAIFK+LGN EEK+QETG ESRE+KNRDTQF SYI+ KTK+ ICNNTSDG   RRS IIV
Sbjct: 346 LAIFKELGNPEEKEQETGTESRESKNRDTQFFSYINRKTKHAICNNTSDGWAARRSSIIV 405

Query: 72  GEEKLSEEGFGDLMHGYRELSVENISGLIRREAVGNGVEMKGGKLGG---EVVNAAVVVV 131
           G++KLS++G GDL +G+ EL +ENI+G IRREAV N VE+K GKLGG   EVV+A VVVV
Sbjct: 406 GDQKLSKQGAGDLTNGFIELPIENIAGFIRREAVRNRVEVKRGKLGGEAVEVVDATVVVV 465

Query: 132 GVEEGDLETGVAEEVGKTEEGFDVAVGRKGK 157
           GVEEGD ETGVAEE+G+ EEGFDVA GRKGK
Sbjct: 466 GVEEGDTETGVAEELGEREEGFDVAFGRKGK 496

The following BLAST results are available for this feature:
BLAST of HG10017247 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603616.15.3e-4772.8517.6 kDa class I heat shock protein 3, partial [Cucurbita argyrosperma subsp. so... [more]
BLAST of HG10017247 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10017247 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10017247 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017247.1HG10017247.1mRNA