HG10017243 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017243
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Glutathione S-transferase-like protein
Location	Chr03: 12219837 .. 12220019 (-)
RNA-Seq Expression	HG10017243
Synteny	HG10017243

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGCTTTGGGTGTTCAAATACTTACCACTCACTTGCAACACCTTCCAAGGCTAAGTCAATGGTGCCATCACTTTCTTCAACATCCCATTGTCAAACACAATCTGCCCCCCAAAACTCAACTCCTTTCTTTCTTTAACTCACAGTTTGGACCCAATAATAATCTTCCTTCCAAATGA

mRNA sequence

ATGGAAGAAGCTTTGGGTGTTCAAATACTTACCACTCACTTGCAACACCTTCCAAGGCTAAGTCAATGGTGCCATCACTTTCTTCAACATCCCATTGTCAAACACAATCTGCCCCCCAAAACTCAACTCCTTTCTTTCTTTAACTCACAGTTTGGACCCAATAATAATCTTCCTTCCAAATGA

Coding sequence (CDS)

ATGGAAGAAGCTTTGGGTGTTCAAATACTTACCACTCACTTGCAACACCTTCCAAGGCTAAGTCAATGGTGCCATCACTTTCTTCAACATCCCATTGTCAAACACAATCTGCCCCCCAAAACTCAACTCCTTTCTTTCTTTAACTCACAGTTTGGACCCAATAATAATCTTCCTTCCAAATGA

Protein sequence

MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPNNNLPSK

Homology

[Close]

BLAST of HG10017243 vs. NCBI nr
Match: XP_038883271.1 (probable glutathione S-transferase [Benincasa hispida])

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 50/60 (83.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPNNNLPSK 60
           MEEAL VQILTT LQ LPRL+QWCHHFLQHPIVK  LPPKTQLL+FF SQFG  NNLPSK
Sbjct: 164 MEEALDVQILTTELQKLPRLTQWCHHFLQHPIVKQTLPPKTQLLAFFKSQFG-TNNLPSK 222

[Close]

BLAST of HG10017243 vs. NCBI nr
Match: XP_004147908.1 (probable glutathione S-transferase [Cucumis sativus] >KGN54327.1 hypothetical protein Csa_017868 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPNN 56
           M+EA GVQILT+ LQ+LPRL+QWCHHFLQHPIVKHNLPPKTQLL+ F SQF   N
Sbjct: 168 MDEAFGVQILTSELQNLPRLTQWCHHFLQHPIVKHNLPPKTQLLALFKSQFVDTN 222

[Close]

BLAST of HG10017243 vs. NCBI nr
Match: XP_008448743.1 (PREDICTED: probable glutathione S-transferase [Cucumis melo] >KAA0045103.1 putative glutathione S-transferase [Cucumis melo var. makuwa] >TYJ96225.1 putative glutathione S-transferase [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1   MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPNN 56
           M+EA GV+ILTT LQ+LP L+QWCH FLQHPIV+HNLPPKTQLL+FF  QF   N
Sbjct: 169 MDEAFGVRILTTELQNLPSLTQWCHRFLQHPIVEHNLPPKTQLLAFFKLQFVDKN 223

[Close]

BLAST of HG10017243 vs. NCBI nr
Match: KAG6595359.1 (Glutathione S-transferase U8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1   MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFG 53
           MEEALG ++LT+ LQ LPRL QWCH FL+H +VK  L PKT+LL F ++QFG
Sbjct: 167 MEEALGEEVLTSQLQQLPRLRQWCHDFLEHSVVKQTLSPKTELLEFMSTQFG 218

[Close]

BLAST of HG10017243 vs. NCBI nr
Match: XP_022151557.1 (glutathione S-transferase U8-like [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1   MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPN 55
           MEEALG  +LT+ LQ LP L +WCH F++H +VK  LPPK  LL+FF+SQFG N
Sbjct: 167 MEEALGFDVLTSELQKLPNLRRWCHEFVEHSLVKQTLPPKPDLLAFFSSQFGTN 220

[Close]

BLAST of HG10017243 vs. ExPASy TrEMBL
Match: A0A0A0L160 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G304240 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.0e-17
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPNN 56
           M+EA GVQILT+ LQ+LPRL+QWCHHFLQHPIVKHNLPPKTQLL+ F SQF   N
Sbjct: 168 MDEAFGVQILTSELQNLPRLTQWCHHFLQHPIVKHNLPPKTQLLALFKSQFVDTN 222

[Close]

BLAST of HG10017243 vs. ExPASy TrEMBL
Match: A0A5A7TNK4 (Putative glutathione S-transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00130 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.8e-15
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1   MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPNN 56
           M+EA GV+ILTT LQ+LP L+QWCH FLQHPIV+HNLPPKTQLL+FF  QF   N
Sbjct: 169 MDEAFGVRILTTELQNLPSLTQWCHRFLQHPIVEHNLPPKTQLLAFFKLQFVDKN 223

[Close]

BLAST of HG10017243 vs. ExPASy TrEMBL
Match: A0A1S3BLA7 (probable glutathione S-transferase OS=Cucumis melo OX=3656 GN=LOC103490813 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.8e-15
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1   MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPNN 56
           M+EA GV+ILTT LQ+LP L+QWCH FLQHPIV+HNLPPKTQLL+FF  QF   N
Sbjct: 169 MDEAFGVRILTTELQNLPSLTQWCHRFLQHPIVEHNLPPKTQLLAFFKLQFVDKN 223

[Close]

BLAST of HG10017243 vs. ExPASy TrEMBL
Match: A0A6J1DDU3 (glutathione S-transferase U8-like OS=Momordica charantia OX=3673 GN=LOC111019471 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1   MEEALGVQILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPN 55
           MEEALG  +LT+ LQ LP L +WCH F++H +VK  LPPK  LL+FF+SQFG N
Sbjct: 167 MEEALGFDVLTSELQKLPNLRRWCHEFVEHSLVKQTLPPKPDLLAFFSSQFGTN 220

[Close]

BLAST of HG10017243 vs. ExPASy TrEMBL
Match: A0A0A0KXD5 (GST_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G303140 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1   MEEALGVQ-ILTTHLQHLPRLSQWCHHFLQHPIVKHNLPPKTQLLSFFNSQFGPN 55
           +EE+LG+  +L+T ++ LP   +WC+ F +H IVK   PPK  LL+FF SQFG N
Sbjct: 83  IEESLGLDGLLSTEMERLPNQRRWCNEFEEHAIVKVIPPPKQDLLAFFISQFGTN 137

The following BLAST results are available for this feature:

BLAST of HG10017243 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883271.1	1.8e-18	83.33	probable glutathione S-transferase [Benincasa hispida]	[more]
XP_004147908.1	1.6e-16	78.18	probable glutathione S-transferase [Cucumis sativus] >KGN54327.1 hypothetical pr...	[more]
XP_008448743.1	2.0e-14	72.73	PREDICTED: probable glutathione S-transferase [Cucumis melo] >KAA0045103.1 putat...	[more]
KAG6595359.1	7.9e-11	63.46	Glutathione S-transferase U8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022151557.1	7.9e-11	61.11	glutathione S-transferase U8-like [Momordica charantia]	[more]

BLAST of HG10017243 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017243 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L160	8.0e-17	78.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G304240 PE=3 SV=1	[more]
A0A5A7TNK4	9.8e-15	72.73	Putative glutathione S-transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BLA7	9.8e-15	72.73	probable glutathione S-transferase OS=Cucumis melo OX=3656 GN=LOC103490813 PE=3 ...	[more]
A0A6J1DDU3	3.8e-11	61.11	glutathione S-transferase U8-like OS=Momordica charantia OX=3673 GN=LOC111019471...	[more]
A0A0A0KXD5	7.0e-05	49.09	GST_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G303140 PE=4 ...	[more]

BLAST of HG10017243 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1050.10		coord: 1..54 e-value: 3.0E-8 score: 35.7
IPR036282	Glutathione S-transferase, C-terminal domain superfamily	SUPERFAMILY	47616	GST C-terminal domain-like	coord: 12..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017243.1	HG10017243.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006749	glutathione metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004364	glutathione transferase activity