HG10017203 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017203
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 11910200 .. 11910835 (-)
RNA-Seq Expression	HG10017203
Synteny	HG10017203

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCTTTCCGACGACTACCCTCACGAACTCTCCTCCTTCCTCCACCGCCACCCACTGGCTCACATGATCCGCAACCACCAAGTTCCCTCTCGGACCACCGGATCTGCAACGTCTGCCGTGAATCCATCAACGGCAATTTCTACCGCTGCAAAGACTGCCACTTCCACGTCCACTCATTTTGCACTCATCTCCCCAAAAAGCTCCGCCACGTCATTGACCCCAACCATAAGCTCCGCCTCCACAAGCTCCCCTCTGCCCACTGTTCTATTTGCAAAGCTGATTGTTCTTCTCTCTGGGTTTACGGCTGCACCGTTTGTAACGTCAATATCCATCTCAATTGCCTTCGAAAACCCACCGCCCGCCCCCCTTCCGTTTCACGTCCGACACACCACCATGCACCGCCACCGTGGGCGGCGGGGCCACCCCAATCTCATGTTCATGGACTTGTTCAATTTGCAGACAACAATAATAATAATGGAGGACATGGAATTGCAGGTAATTCCTCGTCATCATCCAGCTTGGGATCGGTGTTTGGGAGTGCAATGTTTTCTCTGGTTCAAAATTTGGCGATTGGGGTTCTCACTAATTTTATTTTCGGTTCAATTGGTTTTTAATAATCCTTTTAATTTCTAA

mRNA sequence

ATGCATCTTTCCGACGACTACCCTCACGAACTCTCCTCCTTCCTCCACCGCCACCCACTGGCTCACATGATCCGCAACCACCAAGTTCCCTCTCGGACCACCGGATCTGCAACGTCTGCCGTGAATCCATCAACGGCAATTTCTACCGCTGCAAAGACTGCCACTTCCACGTCCACTCATTTTGCACTCATCTCCCCAAAAAGCTCCGCCACGTCATTGACCCCAACCATAAGCTCCGCCTCCACAAGCTCCCCTCTGCCCACTGTTCTATTTGCAAAGCTGATTGTTCTTCTCTCTGGGTTTACGGCTGCACCGTTTGTAACGTCAATATCCATCTCAATTGCCTTCGAAAACCCACCGCCCGCCCCCCTTCCGTTTCACGTCCGACACACCACCATGCACCGCCACCGTGGGCGGCGGGGCCACCCCAATCTCATGTTCATGGACTTGTTCAATTTGCAGACAACAATAATAATAATGGAGGACATGGAATTGCAGGTAATTCCTCGTCATCATCCAGCTTGGGATCGGTGTTTGGGAGTGCAATGTTTTCTCTGGTTCAAAATTTGGCGATTGGGGTTCTCACTAATTTTATTTTCGGTTCAATTGGTTTTTAATAATCCTTTTAATTTCTAA

Coding sequence (CDS)

ATGCATCTTTCCGACGACTACCCTCACGAACTCTCCTCCTTCCTCCACCGCCACCCACTGGCTCACATGATCCGCAACCACCAAGTTCCCTCTCGGACCACCGGATCTGCAACGTCTGCCGTGAATCCATCAACGGCAATTTCTACCGCTGCAAAGACTGCCACTTCCACGTCCACTCATTTTGCACTCATCTCCCCAAAAAGCTCCGCCACGTCATTGACCCCAACCATAAGCTCCGCCTCCACAAGCTCCCCTCTGCCCACTGTTCTATTTGCAAAGCTGATTGTTCTTCTCTCTGGGTTTACGGCTGCACCGTTTGTAACGTCAATATCCATCTCAATTGCCTTCGAAAACCCACCGCCCGCCCCCCTTCCGTTTCACGTCCGACACACCACCATGCACCGCCACCGTGGGCGGCGGGGCCACCCCAATCTCATGTTCATGGACTTGTTCAATTTGCAGACAACAATAATAATAATGGAGGACATGGAATTGCAGGTAATTCCTCGTCATCATCCAGCTTGGGATCGGTGTTTGGGAGTGCAATGTTTTCTCTGGTTCAAAATTTGGCGATTGGGGTTCTCACTAATTTTATTTTCGGTTCAATTGGTTTTTAATAATCCTTTTAATTTCTAA

Protein sequence

MHLSDDYPHELSSFLHRHPLAHMIRNHQVPSRTTGSATSAVNPSTAISTAAKTATSTSTHFALISPKSSATSLTPTISSASTSSPLPTVLFAKLIVLLSGFTAAPFVTSISISIAFENPPPAPLPFHVRHTTMHRHRGRRGHPNLMFMDLFNLQTTIIIMEDMELQVIPRHHPAWDRCLGVQCFLWFKIWRLGFSLILFSVQLVFNNPFNF

Homology

[Close]

BLAST of HG10017203 vs. NCBI nr
Match: XP_023545039.1 (uncharacterized protein LOC111804464 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1  MHLSDDYPHELSSFLHRHPLAHMIRNHQVPSRT 34
          MH S DYPHELSSFLHRHPLAHMIRN  VPSRT
Sbjct: 12 MHTSSDYPHELSSFLHRHPLAHMIRNPHVPSRT 44

[Close]

BLAST of HG10017203 vs. NCBI nr
Match: XP_022950007.1 (uncharacterized protein LOC111453231 [Cucurbita moschata] >KAG6603633.1 hypothetical protein SDJN03_04242, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1  MHLSDDYPHELSSFLHRHPLAHMIRNHQVPSRT 34
          MH S DYPHELSSFLHRHPLAHMIRN  VPSRT
Sbjct: 12 MHTSSDYPHELSSFLHRHPLAHMIRNPHVPSRT 44

[Close]

BLAST of HG10017203 vs. NCBI nr
Match: XP_022978279.1 (uncharacterized protein LOC111478313 [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1  MHLSDDYPHELSSFLHRHPLAHMIRNHQVPSRT 34
          MH S DYPHELSSFLHRHPLAHMIRN  VPSRT
Sbjct: 12 MHTSSDYPHELSSFLHRHPLAHMIRNPHVPSRT 44

[Close]

BLAST of HG10017203 vs. NCBI nr
Match: XP_038882330.1 (uncharacterized protein LOC120073579 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 2  HLSDDYPHELSSFLHRHPLAHMIRNHQVPSRT 34
          +LSDDYPHELSSFLHRHPL HMIRN  VPSRT
Sbjct: 19 NLSDDYPHELSSFLHRHPLTHMIRNPLVPSRT 50

[Close]

BLAST of HG10017203 vs. ExPASy TrEMBL
Match: A0A6J1ITN5 (uncharacterized protein LOC111478313 OS=Cucurbita maxima OX=3661 GN=LOC111478313 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1  MHLSDDYPHELSSFLHRHPLAHMIRNHQVPSRT 34
          MH S DYPHELSSFLHRHPLAHMIRN  VPSRT
Sbjct: 12 MHTSSDYPHELSSFLHRHPLAHMIRNPHVPSRT 44

[Close]

BLAST of HG10017203 vs. ExPASy TrEMBL
Match: A0A6J1GDM7 (uncharacterized protein LOC111453231 OS=Cucurbita moschata OX=3662 GN=LOC111453231 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1  MHLSDDYPHELSSFLHRHPLAHMIRNHQVPSRT 34
          MH S DYPHELSSFLHRHPLAHMIRN  VPSRT
Sbjct: 12 MHTSSDYPHELSSFLHRHPLAHMIRNPHVPSRT 44

The following BLAST results are available for this feature:

BLAST of HG10017203 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545039.1	2.4e-06	87.88	uncharacterized protein LOC111804464 [Cucurbita pepo subsp. pepo]	[more]
XP_022950007.1	2.4e-06	87.88	uncharacterized protein LOC111453231 [Cucurbita moschata] >KAG6603633.1 hypothet...	[more]
XP_022978279.1	2.4e-06	87.88	uncharacterized protein LOC111478313 [Cucurbita maxima]	[more]
XP_038882330.1	1.6e-05	87.50	uncharacterized protein LOC120073579 [Benincasa hispida]	[more]

BLAST of HG10017203 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017203 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ITN5	1.2e-06	87.88	uncharacterized protein LOC111478313 OS=Cucurbita maxima OX=3661 GN=LOC111478313...	[more]
A0A6J1GDM7	1.2e-06	87.88	uncharacterized protein LOC111453231 OS=Cucurbita moschata OX=3662 GN=LOC1114532...	[more]

BLAST of HG10017203 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017203.1	HG10017203.1	mRNA