HG10017182 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017182
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionATP synthase subunit a, chloroplastic
LocationChr03: 11749823 .. 11750143 (-)
RNA-Seq ExpressionHG10017182
SyntenyHG10017182
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATTCTATTATGTTCTATCAACACACAAAAGGGGTTATACGATATATCTGGTGTGGAAGTCGGCCAACATTTGTATTGGCAAATAGGAGGTTTCCAAGTACATGCCCAAGTACTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCAGCCATTATAGCTGTTCGTAATCCACAAACCATTCCTACTGACGGTCAGAATTTCTTCAAATATGTCCTTGAATTCATTCGAGACGTGAGCAAAACTCAGATTGGCGAAGAATATGGTCCATGGGCACTTAGAATATTGCTTACCCTTGAGGTGGAAGAATGA

mRNA sequence

ATGAATATTCTATTATGTTCTATCAACACACAAAAGGGGTTATACGATATATCTGGTGTGGAAGTCGGCCAACATTTGTATTGGCAAATAGGAGGTTTCCAAGTACATGCCCAAGTACTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCAGCCATTATAGCTGTTCGTAATCCACAAACCATTCCTACTGACGGTCAGAATTTCTTCAAATATGTCCTTGAATTCATTCGAGACGTGAGCAAAACTCAGATTGGCGAAGAATATGGTCCATGGGCACTTAGAATATTGCTTACCCTTGAGGTGGAAGAATGA

Coding sequence (CDS)

ATGAATATTCTATTATGTTCTATCAACACACAAAAGGGGTTATACGATATATCTGGTGTGGAAGTCGGCCAACATTTGTATTGGCAAATAGGAGGTTTCCAAGTACATGCCCAAGTACTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCAGCCATTATAGCTGTTCGTAATCCACAAACCATTCCTACTGACGGTCAGAATTTCTTCAAATATGTCCTTGAATTCATTCGAGACGTGAGCAAAACTCAGATTGGCGAAGAATATGGTCCATGGGCACTTAGAATATTGCTTACCCTTGAGGTGGAAGAATGA

Protein sequence

MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRNPQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPWALRILLTLEVEE
Homology
BLAST of HG10017182 vs. NCBI nr
Match: AHM88818.1 (ATP synthase CF0 subunit IV [Lagenaria siceraria])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. NCBI nr
Match: YP_009752654.1 (CF0 subunit IV [Ampelosycios humblotii] >QIT05135.1 CF0 subunit IV [Ampelosycios humblotii])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. NCBI nr
Match: AHM91176.1 (ATP synthase CF0 subunit IV [Lagenaria siceraria])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. NCBI nr
Match: YP_009751726.1 (CF0 subunit IV [Herpetospermum pedunculosum] >QIT04459.1 CF0 subunit IV [Herpetospermum pedunculosum] >QJR52944.1 ATP synthase CF0 subunit IV [Herpetospermum pedunculosum])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. NCBI nr
Match: AHM91116.1 (ATP synthase CF0 subunit IV [Lagenaria siceraria])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy Swiss-Prot
Match: Q4VZP5 (ATP synthase subunit a, chloroplastic OS=Cucumis sativus OX=3659 GN=atpI PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 7.9e-49
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy Swiss-Prot
Match: Q09X29 (ATP synthase subunit a, chloroplastic OS=Morus indica OX=248361 GN=atpI PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.6e-47
Identity = 88/94 (93.62%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MN+LLCSINT KGLYDISGVEVGQHLYW+IGGFQVHAQVLITSWVVIAILLGS+IIAVRN
Sbjct: 1  MNVLLCSINTLKGLYDISGVEVGQHLYWKIGGFQVHAQVLITSWVVIAILLGSSIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVS+TQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSRTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy Swiss-Prot
Match: Q0G9N1 (ATP synthase subunit a, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=atpI PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-45
Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MN+L CSINT KGLYDISGVEVGQH YWQIGGFQVHAQVLITSWVVIAILLGSA IAVRN
Sbjct: 1  MNVLPCSINTLKGLYDISGVEVGQHFYWQIGGFQVHAQVLITSWVVIAILLGSATIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRD+SKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDLSKTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy Swiss-Prot
Match: Q09G58 (ATP synthase subunit a, chloroplastic OS=Platanus occidentalis OX=4403 GN=atpI PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-45
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MN+L CSINT KGLYDISGVEVGQH YWQIGGFQVHAQVLITSWVVIAILLGSA +AVRN
Sbjct: 1  MNVLPCSINTLKGLYDISGVEVGQHFYWQIGGFQVHAQVLITSWVVIAILLGSATVAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRD+SKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDLSKTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy Swiss-Prot
Match: Q4FGF5 (ATP synthase subunit a, chloroplastic OS=Ranunculus macranthus OX=334596 GN=atpI PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-45
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MN+L CS+NT KGLYDISGVEVGQH YWQIGGFQVHAQVLITSW VIAILLGSAIIAVRN
Sbjct: 1  MNVLPCSVNTLKGLYDISGVEVGQHFYWQIGGFQVHAQVLITSWFVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRD+SKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDLSKTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy TrEMBL
Match: A0A218KG29 (ATP synthase subunit a, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpI PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy TrEMBL
Match: G3ETX3 (ATP synthase subunit a, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=atpI PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy TrEMBL
Match: A0A1X9Q128 (ATP synthase subunit a, chloroplastic OS=Cucumis sativus OX=3659 GN=atpI PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy TrEMBL
Match: A0A1S4ETZ3 (ATP synthase subunit a, chloroplastic OS=Cucumis melo OX=3656 GN=atpI PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. ExPASy TrEMBL
Match: A0A249RZA4 (ATP synthase subunit a, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=atpI PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60
          MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN
Sbjct: 1  MNILLCSINTQKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAVRN 60

Query: 61 PQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          PQTIPTDGQNFF+YVLEFIRDVSKTQIGEEYGPW
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDVSKTQIGEEYGPW 94

BLAST of HG10017182 vs. TAIR 10
Match: ATCG00150.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 177.2 bits (448), Expect = 7.1e-45
Identity = 83/96 (86.46%), Postives = 92/96 (95.83%), Query Frame = 0

Query: 1  MNILLCSINT--QKGLYDISGVEVGQHLYWQIGGFQVHAQVLITSWVVIAILLGSAIIAV 60
          MN+L CSINT  ++GLY+ISGVEVGQH YWQIGGFQVHAQVLITSWVVIAILLGSA++A+
Sbjct: 1  MNVLSCSINTLIKEGLYEISGVEVGQHFYWQIGGFQVHAQVLITSWVVIAILLGSAVLAI 60

Query: 61 RNPQTIPTDGQNFFKYVLEFIRDVSKTQIGEEYGPW 95
          RNPQTIPTDGQNFF++VLEFIRDVSKTQIGEEYGPW
Sbjct: 61 RNPQTIPTDGQNFFEFVLEFIRDVSKTQIGEEYGPW 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AHM88818.16.0e-4698.94ATP synthase CF0 subunit IV [Lagenaria siceraria][more]
YP_009752654.16.0e-4698.94CF0 subunit IV [Ampelosycios humblotii] >QIT05135.1 CF0 subunit IV [Ampelosycios... [more]
AHM91176.16.0e-4698.94ATP synthase CF0 subunit IV [Lagenaria siceraria][more]
YP_009751726.16.0e-4698.94CF0 subunit IV [Herpetospermum pedunculosum] >QIT04459.1 CF0 subunit IV [Herpeto... [more]
AHM91116.16.0e-4698.94ATP synthase CF0 subunit IV [Lagenaria siceraria][more]
Match NameE-valueIdentityDescription
Q4VZP57.9e-4998.94ATP synthase subunit a, chloroplastic OS=Cucumis sativus OX=3659 GN=atpI PE=3 SV... [more]
Q09X299.6e-4793.62ATP synthase subunit a, chloroplastic OS=Morus indica OX=248361 GN=atpI PE=3 SV=... [more]
Q0G9N11.1e-4592.55ATP synthase subunit a, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=atpI... [more]
Q09G581.4e-4591.49ATP synthase subunit a, chloroplastic OS=Platanus occidentalis OX=4403 GN=atpI P... [more]
Q4FGF51.4e-4591.49ATP synthase subunit a, chloroplastic OS=Ranunculus macranthus OX=334596 GN=atpI... [more]
Match NameE-valueIdentityDescription
A0A218KG292.9e-4698.94ATP synthase subunit a, chloroplastic OS=Cucumis sativus var. hardwickii OX=3192... [more]
G3ETX32.9e-4698.94ATP synthase subunit a, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=a... [more]
A0A1X9Q1282.9e-4698.94ATP synthase subunit a, chloroplastic OS=Cucumis sativus OX=3659 GN=atpI PE=3 SV... [more]
A0A1S4ETZ32.9e-4698.94ATP synthase subunit a, chloroplastic OS=Cucumis melo OX=3656 GN=atpI PE=3 SV=1[more]
A0A249RZA42.9e-4698.94ATP synthase subunit a, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658... [more]
Match NameE-valueIdentityDescription
ATCG00150.17.1e-4586.46ATPase, F0 complex, subunit A protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR045082ATP synthase, F0 complex, subunit A, bacterial/chloroplastPANTHERPTHR42823ATP SYNTHASE SUBUNIT A, CHLOROPLASTICcoord: 12..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017182.1HG10017182.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0015078 proton transmembrane transporter activity