HG10017037 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017037
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase RZFP34-like
Location	Chr03: 10508029 .. 10508954 (+)
RNA-Seq Expression	HG10017037
Synteny	HG10017037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATGGAGTGCGGAATGGAGGCTTGGATTTCCCCAAATGGCGATAAGTCTTTGATCGATCTCGGATATGGCAGCTTCGGGTAGTTCATCTGTCTTACACAATGTCTAAATTAATTTCGATATGTTTTTTAGGGTTTTTAGTAGCGCTTTGGCGTGGGAGATTTTCTTATTTCTTTGGTTTATAATTTGAAGGTGTTCTCATTATAGAAGGAGGTGTAAGATCAGAGCTCCTTGTTGCAATGAAATTTTTGATTGCAGACATTGTCACAATGAAGCAAAGGTTAGCTTCTGATTGATTGTTATTTTCATGTTTATAAATGTTTTTGAGAAATTGGATTCATTAAAGATCCCCATTGATGTTCTTTCTGCAGAATTCATTAGATGTGGATCCTCTCTTACGCCACGACATTCCTCGCCATGATATGGAAAAAGTAAGTTCCCTTTCAGTTTTCTTTATAGCTACATTCTCTGAATTATCATTTGTATGTCAAGCATCAATTAAGCTTCATGTTTCACTTTTTCATGAATATTTCTTCTGAATTCATGTTTCTCTTGGTTTTTTCTTATTCAGATTAGTTTCAAGTTTAATTTTGTTAGGATCTTAAAAACATTTAGGAGGAGATTAAAGAACAAAGAAATAGAGAGTAACTAGAAAGACCTTCAAATTTTCTAGAATATGAATTCTAATTCATGAGTTCTTGTTTTGAATCCCTCTATAGGTCATCTGTTCCTTGTGTGGCACGGAACAAGACGTTAGTCCTTTCCTTCAAAGCCTCCTTCACCTAAAATATGGGGAAAGAGAATTAAATATCATTTGTTACTTCTTTTAGGTGCGACAACATTGTATTCAATGTGGAGTTTGTATGGGGAAGTACTTTTGTGCAAAGTGCAAGTTCTTCGATGACGATGTAGGCTTCTATTGA

mRNA sequence

ATGACGATGGAGTGCGGAATGGAGGCTTGGATTTCCCCAAATGGCGATAAGTCTTTGATCGATCTCGGATATGGCAGCTTCGGGTGTTCTCATTATAGAAGGAGGTGTAAGATCAGAGCTCCTTGTTGCAATGAAATTTTTGATTGCAGACATTGTCACAATGAAGCAAAGAATTCATTAGATGTGGATCCTCTCTTACGCCACGACATTCCTCGCCATGATATGGAAAAAGTGCGACAACATTGTATTCAATGTGGAGTTTGTATGGGGAAGTACTTTTGTGCAAAGTGCAAGTTCTTCGATGACGATGTAGGCTTCTATTGA

Coding sequence (CDS)

ATGACGATGGAGTGCGGAATGGAGGCTTGGATTTCCCCAAATGGCGATAAGTCTTTGATCGATCTCGGATATGGCAGCTTCGGGTGTTCTCATTATAGAAGGAGGTGTAAGATCAGAGCTCCTTGTTGCAATGAAATTTTTGATTGCAGACATTGTCACAATGAAGCAAAGAATTCATTAGATGTGGATCCTCTCTTACGCCACGACATTCCTCGCCATGATATGGAAAAAGTGCGACAACATTGTATTCAATGTGGAGTTTGTATGGGGAAGTACTTTTGTGCAAAGTGCAAGTTCTTCGATGACGATGTAGGCTTCTATTGA

Protein sequence

MTMECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPRHDMEKVRQHCIQCGVCMGKYFCAKCKFFDDDVGFY

Homology

[Close]

BLAST of HG10017037 vs. NCBI nr
Match: XP_038882721.1 (E3 ubiquitin-protein ligase RZFP34-like [Benincasa hispida] >XP_038882722.1 E3 ubiquitin-protein ligase RZFP34-like [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 100/115 (86.96%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTMECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60
           M  ECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIF CRHCHNEAKNSL
Sbjct: 1   MMTECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFYCRHCHNEAKNSL 60

Query: 61  DVDPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
           DVDPLLRHDIPRHDMEK           VRQHCIQCGVCMG+YFCAKCKFFDDDV
Sbjct: 61  DVDPLLRHDIPRHDMEKVICSLCGTEQDVRQHCIQCGVCMGRYFCAKCKFFDDDV 115

[Close]

BLAST of HG10017037 vs. NCBI nr
Match: TYK07331.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.3e-53
Identity = 99/115 (86.09%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MTMECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60
           M MEC MEAWISPNGD S IDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL
Sbjct: 1   MMMECEMEAWISPNGDMSSIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60

Query: 61  DVDPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
           DVDPLLRHDIPRHDMEK           VRQ+CIQCGVCMGKYFCAKCKFFDDDV
Sbjct: 61  DVDPLLRHDIPRHDMEKVICSLCGTEQDVRQYCIQCGVCMGKYFCAKCKFFDDDV 115

[Close]

BLAST of HG10017037 vs. NCBI nr
Match: KAA0063794.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 5.1e-53
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 3   MECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDV 62
           MEC MEAWISPNGD S IDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDV
Sbjct: 2   MECEMEAWISPNGDMSSIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDV 61

Query: 63  DPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
           DPLLRHDIPRHDMEK           VRQ+CIQCGVCMGKYFCAKCKFFDDDV
Sbjct: 62  DPLLRHDIPRHDMEKVICSLCGTEQDVRQYCIQCGVCMGKYFCAKCKFFDDDV 114

[Close]

BLAST of HG10017037 vs. NCBI nr
Match: XP_004143281.1 (E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucumis sativus] >XP_011657675.1 E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucumis sativus] >KGN48202.1 hypothetical protein Csa_003793 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.1e-52
Identity = 98/115 (85.22%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MTMECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60
           M MEC MEAWISPNGD S IDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL
Sbjct: 1   MMMECEMEAWISPNGDMSSIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60

Query: 61  DVDPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
           DVDPLLRHDIPR DMEK           VRQ+CIQCGVCMGKYFCAKCKFFDDDV
Sbjct: 61  DVDPLLRHDIPRQDMEKVICSLCGTEQDVRQYCIQCGVCMGKYFCAKCKFFDDDV 115

[Close]

BLAST of HG10017037 vs. NCBI nr
Match: XP_008462499.1 (PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo] >XP_008462500.1 PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 7.4e-52
Identity = 97/115 (84.35%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MTMECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60
           M MEC MEAWISPNGD S IDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL
Sbjct: 1   MMMECEMEAWISPNGDMSSIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60

Query: 61  DVDPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
            VDPLLRHDIPRHDMEK           VRQ+CIQC VCMGKYFCAKCKFFDDDV
Sbjct: 61  GVDPLLRHDIPRHDMEKVICSLCGTEQDVRQYCIQCEVCMGKYFCAKCKFFDDDV 115

[Close]

BLAST of HG10017037 vs. ExPASy Swiss-Prot
Match: Q9FFB6 (E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-34
Identity = 61/98 (62.24%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 18  SLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPRHDMEK 77
           +L+++G G +GCSHYRRRCKIRAPCC+EIFDCRHCHNEAK+SL ++   RH++PRH++ K
Sbjct: 16  NLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHELPRHEVSK 75

Query: 78  -----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
                      V+Q+C  CGVCMGKYFC+KCKFFDDD+
Sbjct: 76  VICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDL 113

[Close]

BLAST of HG10017037 vs. ExPASy Swiss-Prot
Match: Q5JL96 (Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.0e-33
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 16  DKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPRHDM 75
           D   ++ G   +GC+HYRRRC+IRAPCCNEIFDCRHCHNE KNS+ +D + RH++PRH++
Sbjct: 48  DYEKLEEGIMQYGCAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEV 107

Query: 76  -----------EKVRQHCIQCGVCMGKYFCAKCKFFDDDV 105
                      ++VRQ CI CGVCMGKYFC  CK FDDDV
Sbjct: 108 QQVICSLCGTEQEVRQVCISCGVCMGKYFCEVCKLFDDDV 147

[Close]

BLAST of HG10017037 vs. ExPASy Swiss-Prot
Match: Q10LI1 (E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.0e-24
Identity = 51/100 (51.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 16  DKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPRHDM 75
           D S    G   FGC HYRRRC+IRAPCCN++F CRHCHNE+           H++ RH +
Sbjct: 5   DASRHGFGRMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNESTKD-------GHELDRHAV 64

Query: 76  EK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
           E            V Q C  CGVCMG+YFC+ CKFFDDDV
Sbjct: 65  ESVICLVCDTEQPVAQVCYNCGVCMGEYFCSACKFFDDDV 97

[Close]

BLAST of HG10017037 vs. ExPASy Swiss-Prot
Match: Q8VZK0 (E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 7   MEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLL 66
           MEA  SPN     +  G   FGC HY+RRC+IRAPCCNE+FDCRHCHNE+ ++L  +   
Sbjct: 1   MEA--SPN---DRLHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLR-NIYD 60

Query: 67  RHDIPRHDMEKV-----------RQHCIQCGVCMGKYFCAKCKFFDDD 104
           RHD+ R D+++V            Q C  CGV MG+YFC+ C F+DDD
Sbjct: 61  RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDD 102

[Close]

BLAST of HG10017037 vs. ExPASy Swiss-Prot
Match: O14099 (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC2F3.16 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-14
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 16  DKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPR--H 75
           +K+  D      GCSHY R CK++   C+E + CRHCHN+A + +   P + + +     
Sbjct: 129 EKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICS 188

Query: 76  DMEKVRQHCIQCGVCMGKYFCAKCKFFDDD 104
            ++   Q+C  C  CMG+Y+C KCK +DDD
Sbjct: 189 KVQPAAQYCKYCKNCMGRYYCNKCKLWDDD 218

[Close]

BLAST of HG10017037 vs. ExPASy TrEMBL
Match: A0A5D3C611 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00460 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.5e-54
Identity = 99/115 (86.09%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MTMECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60
           M MEC MEAWISPNGD S IDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL
Sbjct: 1   MMMECEMEAWISPNGDMSSIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60

Query: 61  DVDPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
           DVDPLLRHDIPRHDMEK           VRQ+CIQCGVCMGKYFCAKCKFFDDDV
Sbjct: 61  DVDPLLRHDIPRHDMEKVICSLCGTEQDVRQYCIQCGVCMGKYFCAKCKFFDDDV 115

[Close]

BLAST of HG10017037 vs. ExPASy TrEMBL
Match: A0A5A7V9A0 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00080 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.5e-53
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 3   MECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDV 62
           MEC MEAWISPNGD S IDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDV
Sbjct: 2   MECEMEAWISPNGDMSSIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDV 61

Query: 63  DPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
           DPLLRHDIPRHDMEK           VRQ+CIQCGVCMGKYFCAKCKFFDDDV
Sbjct: 62  DPLLRHDIPRHDMEKVICSLCGTEQDVRQYCIQCGVCMGKYFCAKCKFFDDDV 114

[Close]

BLAST of HG10017037 vs. ExPASy TrEMBL
Match: A0A0A0KIG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G448100 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.5e-53
Identity = 98/115 (85.22%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MTMECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60
           M MEC MEAWISPNGD S IDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL
Sbjct: 1   MMMECEMEAWISPNGDMSSIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60

Query: 61  DVDPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
           DVDPLLRHDIPR DMEK           VRQ+CIQCGVCMGKYFCAKCKFFDDDV
Sbjct: 61  DVDPLLRHDIPRQDMEKVICSLCGTEQDVRQYCIQCGVCMGKYFCAKCKFFDDDV 115

[Close]

BLAST of HG10017037 vs. ExPASy TrEMBL
Match: A0A1S3CHL2 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103500836 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.6e-52
Identity = 97/115 (84.35%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MTMECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60
           M MEC MEAWISPNGD S IDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL
Sbjct: 1   MMMECEMEAWISPNGDMSSIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60

Query: 61  DVDPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
            VDPLLRHDIPRHDMEK           VRQ+CIQC VCMGKYFCAKCKFFDDDV
Sbjct: 61  GVDPLLRHDIPRHDMEKVICSLCGTEQDVRQYCIQCEVCMGKYFCAKCKFFDDDV 115

[Close]

BLAST of HG10017037 vs. ExPASy TrEMBL
Match: A0A6J1HG84 (E3 ubiquitin-protein ligase RZFP34-like OS=Cucurbita moschata OX=3662 GN=LOC111463216 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.1e-52
Identity = 95/115 (82.61%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MTMECGMEAWISPNGDKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60
           M +E GMEAWIS NG+KSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL
Sbjct: 1   MIVESGMEAWISTNGEKSLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSL 60

Query: 61  DVDPLLRHDIPRHDMEK-----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
           DVDP LRHDIPRHD+EK           V+QHCIQCGVCMGKYFC+KCKFFDDDV
Sbjct: 61  DVDPRLRHDIPRHDIEKVICSLCDTEQDVQQHCIQCGVCMGKYFCSKCKFFDDDV 115

[Close]

BLAST of HG10017037 vs. TAIR 10
Match: AT5G22920.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-35
Identity = 61/98 (62.24%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 18  SLIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPRHDMEK 77
           +L+++G G +GCSHYRRRCKIRAPCC+EIFDCRHCHNEAK+SL ++   RH++PRH++ K
Sbjct: 16  NLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHELPRHEVSK 75

Query: 78  -----------VRQHCIQCGVCMGKYFCAKCKFFDDDV 105
                      V+Q+C  CGVCMGKYFC+KCKFFDDD+
Sbjct: 76  VICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDL 113

[Close]

BLAST of HG10017037 vs. TAIR 10
Match: AT5G25560.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-30
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 19  LIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPRHDME-- 78
           ++D G   +GC HYRRRC IRAPCCNEIF C HCH EAKN+++VD   RHDIPRH +E  
Sbjct: 53  VLDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQV 112

Query: 79  ---------KVRQHCIQCGVCMGKYFCAKCKFFDDD 104
                    +V Q CI CGVCMGKYFC  CK +DDD
Sbjct: 113 ICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDD 148

[Close]

BLAST of HG10017037 vs. TAIR 10
Match: AT5G25560.2 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-30
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 19  LIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPRHDME-- 78
           ++D G   +GC HYRRRC IRAPCCNEIF C HCH EAKN+++VD   RHDIPRH +E  
Sbjct: 53  VLDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQV 112

Query: 79  ---------KVRQHCIQCGVCMGKYFCAKCKFFDDD 104
                    +V Q CI CGVCMGKYFC  CK +DDD
Sbjct: 113 ICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDD 148

[Close]

BLAST of HG10017037 vs. TAIR 10
Match: AT5G25560.3 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 125.6 bits (314), Expect = 2.5e-29
Identity = 57/106 (53.77%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 19  LIDLGYGSFGCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPRHDME-- 78
           ++D G   +GC HYRRRC IRAPCCNEIF C HCH EAKN+++VD   RHDIPRH +E  
Sbjct: 53  VLDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQL 112

Query: 79  -------------------KVRQHCIQCGVCMGKYFCAKCKFFDDD 104
                              +V Q CI CGVCMGKYFC  CK +DDD
Sbjct: 113 TRPLSSSSQVICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDD 158

[Close]

BLAST of HG10017037 vs. TAIR 10
Match: AT5G25560.4 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-26
Identity = 52/87 (59.77%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 28  GCSHYRRRCKIRAPCCNEIFDCRHCHNEAKNSLDVDPLLRHDIPRHDME----------- 87
           G   Y RRC IRAPCCNEIF C HCH EAKN+++VD   RHDIPRH +E           
Sbjct: 57  GLMEYGRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVICLLCGTEQ 116

Query: 88  KVRQHCIQCGVCMGKYFCAKCKFFDDD 104
           +V Q CI CGVCMGKYFC  CK +DDD
Sbjct: 117 EVGQICIHCGVCMGKYFCKVCKLYDDD 143

The following BLAST results are available for this feature:

BLAST of HG10017037 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882721.1	1.6e-54	86.96	E3 ubiquitin-protein ligase RZFP34-like [Benincasa hispida] >XP_038882722.1 E3 u...	[more]
TYK07331.1	1.3e-53	86.09	E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa]	[more]
KAA0063794.1	5.1e-53	86.73	E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa]	[more]
XP_004143281.1	1.1e-52	85.22	E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucumis sativus] >XP_011657675.1 ...	[more]
XP_008462499.1	7.4e-52	84.35	PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo] >XP_008462500.1...	[more]

BLAST of HG10017037 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFB6	1.5e-34	62.24	E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=...	[more]
Q5JL96	8.0e-33	59.00	Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q10LI1	4.0e-24	51.00	E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SR...	[more]
Q8VZK0	1.3e-22	50.00	E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 ...	[more]
O14099	8.3e-14	37.78	Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of HG10017037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C611	6.5e-54	86.09	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7V9A0	2.5e-53	86.73	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KIG3	5.5e-53	85.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G448100 PE=4 SV=1	[more]
A0A1S3CHL2	3.6e-52	84.35	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103500836 P...	[more]
A0A6J1HG84	6.1e-52	82.61	E3 ubiquitin-protein ligase RZFP34-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of HG10017037 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22920.1	1.0e-35	62.24	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G25560.1	1.7e-30	59.38	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G25560.2	1.7e-30	59.38	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G25560.3	2.5e-29	53.77	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G25560.4	3.3e-26	59.77	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008913	Zinc finger, CHY-type	PFAM	PF05495	zf-CHY	coord: 29..99 e-value: 2.0E-13 score: 50.7
IPR008913	Zinc finger, CHY-type	PROSITE	PS51266	ZF_CHY	coord: 22..106 score: 16.693382
None	No IPR available	PANTHER	PTHR21319:SF54	E3 UBIQUITIN-PROTEIN LIGASE RZFP34	coord: 3..104
None	No IPR available	PANTHER	PTHR21319	RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	coord: 3..104
IPR017921	Zinc finger, CTCHY-type	PROSITE	PS51270	ZF_CTCHY	coord: 89..107 score: 10.136885
IPR037274	Zinc finger, CHY-type superfamily	SUPERFAMILY	161219	CHY zinc finger-like	coord: 26..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017037.1	HG10017037.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding