HG10016938 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10016938
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 9495366 .. 9501059 (+)
RNA-Seq ExpressionHG10016938
SyntenyHG10016938
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCCATGGTATGTTTGAATTTTTTTTTCATCCATTAATTAGGGGTGGATTGGGGATTTTTTTTTTTTTTTTTTTAATGGATAACCTCAATTTTTTGTGGTCGTGTGGGTTATAGATTTTAAAAATGATGAAGGTAGGACCGAACTTTTTCTAAAAATAATATTATTTTAATAAATAATGACAAAAATAGGGTTGGATTAGCAAAATCGTGACCACGTCCACTGGACCAGATCCACCAGTTACCCAGCCAAGTGTCAAAGGGTCCAAGTGGGTCAGCAAAATCATGTCATGTGAGCAAAATGAGTATAGTTGTGGTAGGGTTGACCAAGACATGTAAGTAAAATCGTAGATCCAGTCCATGGTTTGAGTGCCATGTGGGCTAATTTTATAAAATCGTGGACGTGTCAACGATTTTCTCACCTATTTTTTAAAATACTTATACCTCTACCCTATTTTTGTCATTATTTATTAAAGTAACATTATTTTTTTAAAAAAATCATGTATTAGAAGCATATTAATTATCTATATTGTCTCTCATTATTTTAGAGAGTGTGAAATTAAGGTCACCCGTATAATAGGACTCTTCCTCCATCTCTCGTGTTTGCGATCCTCGTCCCTCTCTTACTCTCGTGTTTAACTTATCCAATATATCAGTATTCTCATATCGTTAGTGCTCTAACTCTCTTCATATTCACTACTTTGAAACTTCATTAATACATTGTACGAGGAAAAGTATAGATAATTAACATGTTAGTGTGGTCTGATAATGGTAGAGGGTCATCCTTCATTATTGTAAAAATTGGGACAAACAAATGTTAACCATATGAAATTTAGGTCATCCTTCAAAAAAAAAAACTAGAGATTAAATTACTATTTTATCCATTGTTATTTTCTTTACAATAAATGCATATAGGGATAAAGATTTATTTGGCCGACTCTATTTTAGCTTTGTTGATAGGGTTTAAGAAGTCTTAATTTGATTGTGAGCTATATTGCAAAAATAAATAAACAAGTAAATAAAATACATCTTAATTTACCATTTGTTATAAAAATATATCTACCATTAGTTGAAATATTATTTTAGCCCGAGCGGTTTAGCCCACCAACTTCTTAAGTTAGTATTAAACAACAATTTAAATAGTAAAATTATTGAATTTTACATATTTATCGAGAAAATTCATTTTTCACTATTTCTCTATTTTACACGTTTATTATTAAATGATATAAGATTAAATTTTCTTTTAATATATATATATATATATATAAAAGATTGAATTTGCCTCCACCAATAAGTTTAAGCTTTTAAGTTCATCGGTGATTCAAAATGGTATCAAAATAGGTTGGTTTAGGAAGTCTTGTGTTCAAATCCCTGCATTGTTGTCATTCAATTTTACGGGTGTGGTGTGGTTCATTGTTCAACTATTCCAAATTTCAAAATTTTCCAACATTCTTATGAATTTCTATAAAAAAAAAAATAGGACAATTTGTTAAAGAAAGAAAAAAAAAGTTTAGGAGTATTTTTATGTATTGTTGAACTTTAAAAAATAATATAAAAATAGTAATTTAACCTCAAAATTTTTATTTTTTAACCCTTAAATGATTTTATTGACTTTTTCATTGAATTGGTCTCCTTGCAAATGTAGCCTTATTCATAGCTTTAAATAAATGTATATTAAATCTTCGTTTATTTTGTGGTAAAGGGTCATTTGTTTTGAATTTTAAATTTTCATTCAATACTTAGTTAATGTAATGTGAGACCATTTCATACGTGTTATGATACTTATTATATAACTTTATGTCTAATAACATTAGTCAAATTAAATTTTAATTTTAGAAAAAATTGCAAGAATTGCAAAATACACCCCTAAAGTATGGTAGTAGTTGCACTTATACCCTTAAACTTTTAATTTTAAAAATTGAGCCCTCAAACTTAAATGAGTGTTAAAATTAGGTCAAATTGATCATCAAACTTACATAATTATATAAATTGTAATATTTGTATAAGTTTGAGGGTTCAATTTTTAATATTTGTGGGTTCGATTTTAACTTTTGTAAAAGTTCAGGGGCCCAATTTTTACAATTGAAACTTTGAGGGTGTAATTACAACTATCACCATACTTCATGGGTGATTTTTGCAATTTAATTTTCACATTTGGCATACTTTAGAATTATTTAGAATTAAGGTTGTCTAAAAAAATGAATAAATAAATAAAATAAGAATTAAAGTATTACACGTTTTTTGTTTTTAAAAAATTACAAGTGAGGTTATGAATTCGACTAACTTGAACATAGCTCAATTAGTTAAGATGTATGTTCTAGATCAACCAGAGATTCGAATCTCCACTCCCACGTAACGATGACCTTAATAGAAAAATTAGAAATTTTGTGATGGTAAAGTTTGAGGAAAATAATGAAACATTCTTAAAAAGAAGTATTGTTTTTACTATTTAGATTCATGTTTAGCTTTTATCCAATGAGGTTTTTGTTTCTCTTCACAAACTTTCAAATTTTTAATTTTAATCCTTCCATTGTTTTCTTTTATCATTTTAGTCCATTCAAAATTTCAAATTATCTCTATTAATGAAATTTTGTGTTTAATCAAGTGCAAATTAGTATAAATGGTCTATTATAGGAATTCTAGATGATCGAGTTAATAGATAGACAAAGCATTAACGAGTTAGTTGTACAAAATGTTAGCATAATGCATATACGCATACTTTATCGTAGTAGGTAAGTGAATTCTTAAGATATTGAAATAATTAATGTGAATGTGGATTAATTGTCCAAGATTTGCACTAGGAATTGTGTTATTTGTGAGTAGAGTCGAACTATATCATTGTCAATTTGAGCGTAGCTTAACTGGTTAAAGTATATTCTCGACCAAGAGTCCGAAGTTTGAATTCTCACATCCACATATGTTATTGTACTAAAAAAAAAAATCAAAGTATATCATATTAAGATTTGGTAGGTTCCTTAACCAAGAAGATGAAAAGTTGACCTTGGAAGGTTTCTTCATGATGTTTAGTTGAGCTAAAATTGTTTTAACTGATATGATTAGAATGTCAATCTGATCATGTTAAATATATTTTTTTACTAAAAAAAATTAGATGTTTGAATCTCTATTCCTACGAGATTTGTTTTAAGAGATAGAAGAGATGGGTAACAACTATACGATCACTTATACATCACTCTTTGGTAGTATATGTGCAAATGTGGTCGTATAGATCAAAATAATTTAGTCCACCTAATTTATTATATTGTCTAAGGGTCATGTATCATCTCAAGTTGATTGTAAATGACCATATATTTTAAAAGATTCTTGAAGTTTGATAATCTTTAGTATATTTAATATTTAGGCTAACTTTTAGAGAAGGTTGAATATACCAAAAATTTATTAGATACAAAATTAAACCTAAGAGATTTTTAGTAAAACAAAATTTTCTTTTTTAGAAAACTATGTGATACGAAGATGAAAGTGTTTAGAGGGTCAATTAGAGAAACATTGTGGTTTTGAAAAAAAATATGGTTTAAAAATTATTTAGGAAAATAAGGTAGTTTTTTTTTTCTTTTTCATTTTTTGTCTTTTAGTAAAAGTCTTCTTGAAAATTGGAATGCGTCTTTTCTTTACAATTATTGTGATTTCTTTTTTTTTTTTTTTTTACAAATTCGTTTCCTTTATTTTTTTTAAAAAAAATATAATACCACTATTTTTTTTATAATTATTATCTTATTTTATCCTATGCTTTTTTTTTATTATTTTTTTAGCAAAATTTAATTTAATTAAGAAATATTACGGATTTAATCATTTTATTTGTAAAATAATAATCTATTATGTATATATATATATATATATATATAAAGAAATGATGCATTTCTTAAAAAGAAATGATGCATTCCAATTTTCAAGAAAACTCTTTAAAAAAAACTACTTTTTTTCCTAAATAATTTTAAAACCTTGATTCTCTAATTACCCCATGTTTAGAAGTTAAACATATAATTTAACCTAAAAATCGTATCAAATTTTTATGACCAATAAATAATATGGAATAGGTTTATTGCTCCAACTCATAATATGATTAATCTGGTATGGGCTACATGAACTCCTAGTAGTATACCGGATAATTATCGGGCATTCCTGACCCACCAAGTGAAACTCCAAGTGAAACTAATGGTTTCTTGGTTAAACGTTAGACTTGATGTCTTCTATCTTTAGTATATATATATATATAATTTTGGTTGAATATATTTAATCATCGCTAACCATCGAAGAAGTCTTTTTCGATATGTTTTTACCTTGAATTTATTAAAATTTCTTAAACAAGTCAACCATTAAAAAAATTATTAAAATCAGTTAATGCTGATTTTTTATTAGGTTATTTGTTTTGTTAATATATTTAGACGCGTTGACAATCTTTTTGTAAAAGAATTATTTTGCTTATTCAAATTAGATTGATTACAAATCATAGCTGAATTTCAAATATATTTCTAATAAAAAAAATAATTTTAGAAATATTGAATTGAACCAAAATTCTGAAATTTGAAATTTACAGAATATAATATAAAGCCGTTTCACCCACTTCATGCCATTGATCGTACATCAGAATAAAACAATTTAAAAAGAAAAAAGAAAAAAAAATGTAAATTCAAAATTTCAAAACCAAATCCCGTGTCATGGTGGGACCCATTTGCCGCCACGCTCCACTAACCGTAACAAATCGCATAGCGTACAATAAAATCTCTTCTCAAATTACGGTTTTTGGAAAAAGAAATTTTCAATTTTCAATTTCAAACAGTATAAAAAATTACACAAAAATATCAAATCAAAAGCACATGAATGATGAATTTCAACAATGAATTAAAAACAAAAAAATTGAATCCATAAGATTTCAGTAAGAACAGATATGAATGTAGAATTAATAATCACAGCAGATCAATCCAGAAAGGAAAAAGCAAAGAAGTAGGAAATTCAGATCTAACGATTACAAATCATAGCTGCACTTGGTGGTTTCGAACACACCATTTGAAGAAGTACCATTGGATCTCAAAGGAACCTTCAATGGACATCTTAGCTTCGGTTTATAGTGTCCAAATTTCACTAAACCGAACTTGAATCTGATCCGCAAGTTAAGTTTCACATCGATACTGAAAATCCCCGAGCTCTTCTGAGAATTATAAGTCGATATTCCATCCGTACCTAAAAGAATTATGTTCTGTCCAACGAACGAAGGACTGAGTAAACTGGTGTTCTTGTGCCCCTGGTAAAACTGGCTCAAATTCACCGTACTGAACCGCTGATCTTCGTAGAAGGCGCTAACCTCAATAACGTCGTAGTAGATCCCGATCCTCCGATTTGGATTTCTAGCGGTGATATTCAGAGCGAGATTGTAATGGAGGTTGTTATTGTTAGGCGTAGTGAAATTGAACTGCGTGAGAGAGGCATCGGTTGCGTGGAATTGAAGGAGATTTGGACGGAAGATGAGCCACAAGAGGAAGGCAGCAATGCCGAGGACGATGACGACGGTGATGATGATTTGACAGATGAGGTTGAGGATACAGCCGCAGCAGCAGTTGCAGAGGCAGCCGAGACAGCCGCAGCCGCCGTCGCCGCGGCCAGGGCGGTGGTAGGACTTGGAGGAGGGAGGAATGGAAGGGCCGTAGTAAGCTCCGTTGAGATTGGATGCCATTGTTGA

mRNA sequence

ATGGATGCCATGGGTTGGATTAGCAAAATCGTGACCACGTCCACTGGACCAGATCCACCAGTTACCCAGCCAAGTGTCAAAGGGTCCAAGTGGGTCAGCAAAATCATGTCATGTGAGCAAAATGAGTATAGTTGTGGTAGGGTTGACCAAGACATCGGTGATATTCAGAGCGAGATTGTAATGGAGGTTGTTATTGTTAGGCGTAGTGAAATTGAACTGCGTGAGAGAGGCATCGGTTGCGTGGAATTGAAGGAGATTTGGACGGAAGATGAGCCACAAGAGGAAGGCAGCAATGCCGAGGACGATGACGACGGTGATGATGATTTGACAGATGAGGTTGAGGATACAGCCGCAGCAGCAGTTGCAGAGGCAGCCGAGACAGCCGCAGCCGCCGTCGCCGCGGCCAGGGCGGTGGTAGGACTTGGAGGAGGGAGGAATGGAAGGGCCGTAGTAAGCTCCGTTGAGATTGGATGCCATTGTTGA

Coding sequence (CDS)

ATGGATGCCATGGGTTGGATTAGCAAAATCGTGACCACGTCCACTGGACCAGATCCACCAGTTACCCAGCCAAGTGTCAAAGGGTCCAAGTGGGTCAGCAAAATCATGTCATGTGAGCAAAATGAGTATAGTTGTGGTAGGGTTGACCAAGACATCGGTGATATTCAGAGCGAGATTGTAATGGAGGTTGTTATTGTTAGGCGTAGTGAAATTGAACTGCGTGAGAGAGGCATCGGTTGCGTGGAATTGAAGGAGATTTGGACGGAAGATGAGCCACAAGAGGAAGGCAGCAATGCCGAGGACGATGACGACGGTGATGATGATTTGACAGATGAGGTTGAGGATACAGCCGCAGCAGCAGTTGCAGAGGCAGCCGAGACAGCCGCAGCCGCCGTCGCCGCGGCCAGGGCGGTGGTAGGACTTGGAGGAGGGAGGAATGGAAGGGCCGTAGTAAGCTCCGTTGAGATTGGATGCCATTGTTGA

Protein sequence

MDAMGWISKIVTTSTGPDPPVTQPSVKGSKWVSKIMSCEQNEYSCGRVDQDIGDIQSEIVMEVVIVRRSEIELRERGIGCVELKEIWTEDEPQEEGSNAEDDDDGDDDLTDEVEDTAAAAVAEAAETAAAAVAAARAVVGLGGGRNGRAVVSSVEIGCHC
Homology
[Close]
BLAST of HG10016938 vs. NCBI nr
Match: KCW49000.1 (hypothetical protein EUGRSUZ_K02613 [Eucalyptus grandis])

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-05
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 0 

Query: 53  GDIQSEIVMEVVIVRRSEIELRERGIGCVELKEIWTEDEPQEEGSNAEDDDDGDDDLTDE 112
           G+++ E+V E   V   E+EL E  +G VEL E+  EDEP++EG   + D  G+D++ DE
Sbjct: 14  GEVELEVVAEG--VGGGEVELGELRVGDVELDEVGAEDEPEDEGEETDGDHHGEDEVEDE 73

Query: 113 VEDTAAAAVAEAAETAAAAVAAARAVVGLGGGRNGRAVVSSVEIG 158
           +E+ AA A       A AA AAA AVVG+  G +G AVV +VE+G
Sbjct: 74  LEEAAATA-------ADAAPAAAGAVVGVLLGGHGGAVVGAVEVG 109

[Close]
BLAST of HG10016938 vs. NCBI nr
Match: KAA8516802.1 (hypothetical protein F0562_017088 [Nyssa sinensis])

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-04
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 0 

Query: 53  GDIQSEIVMEVVIVRRSEIELRERGIGCVELKEIWTEDEPQEEGSNAEDDDDGDDDLTDE 112
           G ++ E+V+E V     E+EL E  +G ++L  +  EDEP++E  NA D DDGDDDL +E
Sbjct: 54  GHVEGEVVVEGV-GGGGEVELSEGSVGDMKLHLVGAEDEPEDEDGNAYDGDDGDDDLEEE 113

Query: 113 VEDTAAAAVAEAAETAAAAVAAARAVVGLGGGRNGRAVVSSVE 156
           VEDTA  A      TAA A  AA AVVG  G +    +V+ ++
Sbjct: 114 VEDTATEAA-----TAAIAAIAAGAVVGFPGIQRSSVLVTLIK 150

[Close]
BLAST of HG10016938 vs. ExPASy TrEMBL
Match: A0A059A6N3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02613 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 0 

Query: 53  GDIQSEIVMEVVIVRRSEIELRERGIGCVELKEIWTEDEPQEEGSNAEDDDDGDDDLTDE 112
           G+++ E+V E   V   E+EL E  +G VEL E+  EDEP++EG   + D  G+D++ DE
Sbjct: 14  GEVELEVVAEG--VGGGEVELGELRVGDVELDEVGAEDEPEDEGEETDGDHHGEDEVEDE 73

Query: 113 VEDTAAAAVAEAAETAAAAVAAARAVVGLGGGRNGRAVVSSVEIG 158
           +E+ AA A       A AA AAA AVVG+  G +G AVV +VE+G
Sbjct: 74  LEEAAATA-------ADAAPAAAGAVVGVLLGGHGGAVVGAVEVG 109

[Close]
BLAST of HG10016938 vs. ExPASy TrEMBL
Match: A0A5J4ZGS4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017088 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 0 

Query: 53  GDIQSEIVMEVVIVRRSEIELRERGIGCVELKEIWTEDEPQEEGSNAEDDDDGDDDLTDE 112
           G ++ E+V+E V     E+EL E  +G ++L  +  EDEP++E  NA D DDGDDDL +E
Sbjct: 54  GHVEGEVVVEGV-GGGGEVELSEGSVGDMKLHLVGAEDEPEDEDGNAYDGDDGDDDLEEE 113

Query: 113 VEDTAAAAVAEAAETAAAAVAAARAVVGLGGGRNGRAVVSSVE 156
           VEDTA  A      TAA A  AA AVVG  G +    +V+ ++
Sbjct: 114 VEDTATEAA-----TAAIAAIAAGAVVGFPGIQRSSVLVTLIK 150

The following BLAST results are available for this feature:
BLAST of HG10016938 vs. NCBI nr
Match NameE-valueIdentityDescription
KCW49000.17.8e-0544.76hypothetical protein EUGRSUZ_K02613 [Eucalyptus grandis][more]
KAA8516802.13.9e-0443.69hypothetical protein F0562_017088 [Nyssa sinensis][more]
BLAST of HG10016938 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10016938 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A059A6N33.8e-0544.76Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02613 PE=4 SV... [more]
A0A5J4ZGS41.9e-0443.69Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017088 PE=4 SV=1[more]
BLAST of HG10016938 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10016938.1HG10016938.1mRNA