HG10016899 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016899
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	photosystem I reaction center subunit N, chloroplastic
Location	Chr03: 9150839 .. 9152019 (-)
RNA-Seq Expression	HG10016899
Synteny	HG10016899

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCTGACCTGAACTCCAAACTCACTGCCGTCCCGTCTGTTGCGACTCCTGGGGTTGCGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGTAACTATACATAAAAGTTCAAATTGCTTTTATCAAATGCTCTGTTTCCATACTTTGAGTTAGCATAAAATAATAAGAATGTGTTTTGGTTCCTGTTGTTGCTGAATTTCCATAGTATATGAAACAGAAATCTTATGTGGGATTTGTATATGTCAGTGCTTTCACCCATCCACTTAAATTTTTGGGTTAATCCAATTCCTACAATATTATATCCTCTCCGATTAATATTGATTTTCTACATATTTTAAGCCCACAAGTGAGAAAAATTATTAAATGGTATATTATTAAATTTACCTTCATCCATTTATTTAAGTTTTTGAATCAATAGGTGATTTAAGAGTGTCTTAAACTAGAAGTATCTATCAAGTACGCTGACTGTTTGAGTCTTTAAGATTCATGTTGAATGTTATGCTGAAGTTTGAAGCTGAGGACTAATATAGAAATAGAATGTTTCAAAGTATAAGGAAAGGATCAAAAGTAAAGGGACTGAAAACAGGATTTAGATGAAAAATCTTTCATGTTTCTTACCCTGTTATTGCAATTTGCAACAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGGTTTGGACATGGTTTAGTTGTAATCACTATTGGTATTTTTGAATTGTTAACAATATGGGATGAGTTTTTGCTGAGTACTAAGTTAGTTCTCTGTTCTGTTTTTGATGGATGCAGAAAGTTCCATTTATCACTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

mRNA sequence

ATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCTGACCTGAACTCCAAACTCACTGCCGTCCCGTCTGTTGCGACTCCTGGGGTTGCGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCACTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Coding sequence (CDS)

ATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCTGACCTGAACTCCAAACTCACTGCCGTCCCGTCTGTTGCGACTCCTGGGGTTGCGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCACTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Protein sequence

MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW

Homology

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BLAST of HG10016899 vs. NCBI nr
Match: XP_008441057.1 (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo] >KAA0025524.1 photosystem I reaction center subunit N [Cucumis melo var. makuwa] >TYK25680.1 photosystem I reaction center subunit N [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-87
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAVPSVA+PGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. NCBI nr
Match: XP_038883748.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 331.3 bits (848), Expect = 5.1e-87
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAVPSVA+PGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. NCBI nr
Match: XP_004148659.1 (photosystem I reaction center subunit N, chloroplastic [Cucumis sativus] >KGN48348.1 hypothetical protein Csa_003761 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 2.1e-85
Identity = 164/171 (95.91%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVA+PGV GYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. NCBI nr
Match: XP_022950888.1 (photosystem I reaction center subunit N, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADL+SK+ A PSVA+PGV GYKLPAIRAQQARVPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALLYLGATLFAAAAAASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           V+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. NCBI nr
Match: KAG6604288.1 (Photosystem I reaction center subunit N, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADL+SK+ A PSVA+PGV GYKLPAIRAQQARVPEAKN+G
Sbjct: 732 MATMNSSVLACNYAISGAGSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 791

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALLYLGATLFAAAAAASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 792 RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 851

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           V+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 852 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 902

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BLAST of HG10016899 vs. ExPASy Swiss-Prot
Match: P49107 (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAN PE=1 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 3.7e-56
Identity = 114/173 (65.90%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYK-LPAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+  V S    G      +P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A+++L ATLF+ AA   ++SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           +TV+FG+CKFPENFTGCQDLAKQKKVPFI++D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

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BLAST of HG10016899 vs. ExPASy Swiss-Prot
Match: P31093 (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAN PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.5e-45
Identity = 97/143 (67.83%), Postives = 107/143 (74.83%), Query Frame = 0


Query: 29  AVPSVATPGVAGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGV 88
           AVP  A+P  A            RV  A  + RR+ALL L A    AA AAS  SA A V
Sbjct: 16  AVPQSASPAAA-----------KRVQVAPAKDRRSALLGLAAVF--AATAASAGSARASV 75

Query: 89  IEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFIT 148
            ++YLEKSK NKELNDKKR ATSGANFARAYTV+FG+CKFP NFTGCQDLAKQKKVPFIT
Sbjct: 76  FDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFIT 135

Query: 149 DDLELECEGKDKYKCGSNVFWKW 172
           DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 136 DDLEIECEGKEKFKCGSNVFWKW 145

[Close]

BLAST of HG10016899 vs. ExPASy Swiss-Prot
Match: O65107 (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX=4577 GN=PSAN PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.4e-41
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 80  SNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLA 139
           +  SA A + ++YLEKSKANKELNDKKRLATSGANFARAYTVEFG+C+FP NFTGCQDLA
Sbjct: 21  TTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLA 80

Query: 140 KQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           KQKKVPFI+DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 81  KQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

[Close]

BLAST of HG10016899 vs. ExPASy Swiss-Prot
Match: Q9SBN5 (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067 GN=PSAN PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-25
Identity = 71/132 (53.79%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 45  AIRAQQARVPEAK-----------NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYL 104
           A+RAQ A+V  A+           +   R  LL LG  L AAA A    +ANAGV+ED L
Sbjct: 4   AMRAQCAKVQAARPARATTVVCRASAQSRRELLGLGVLLGAAALA---PAANAGVVEDLL 63

Query: 105 EKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLEL 164
            KS ANK LN+KKRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I +DL++
Sbjct: 64  AKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKI 123

Query: 165 ECEGKDKYKCGS 166
           ECEGKD   CGS
Sbjct: 124 ECEGKDAKSCGS 132

[Close]

BLAST of HG10016899 vs. ExPASy TrEMBL
Match: A0A5D3DQX9 (Photosystem I reaction center subunit N OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00100 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.5e-88
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAVPSVA+PGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. ExPASy TrEMBL
Match: A0A1S3B240 (photosystem I reaction center subunit N, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485284 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.5e-88
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAVPSVA+PGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. ExPASy TrEMBL
Match: A0A0A0KFM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483300 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.0e-85
Identity = 164/171 (95.91%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVA+PGV GYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. ExPASy TrEMBL
Match: A0A6J1GG47 (photosystem I reaction center subunit N, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453849 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.4e-84
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADL+SK+ A PSVA+PGV GYKLPAIRAQQARVPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALLYLGATLFAAAAAASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           V+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. ExPASy TrEMBL
Match: A0A6J1BT08 (photosystem I reaction center subunit N, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005283 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.7e-83
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+A P VA+PGVAGYKLPAIRAQQARVPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNS+ANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDL LECEGKDK+KCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. TAIR 10
Match: AT5G64040.1 (photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) )

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-57
Identity = 114/173 (65.90%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYK-LPAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+  V S    G      +P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A+++L ATLF+ AA   ++SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           +TV+FG+CKFPENFTGCQDLAKQKKVPFI++D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of HG10016899 vs. TAIR 10
Match: AT5G64040.2 (photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) )

HSP 1 Score: 158.3 bits (399), Expect = 5.5e-39
Identity = 89/144 (61.81%), Postives = 112/144 (77.78%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYK-LPAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+  V S    G      +P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A+++L ATLF+ AA   ++SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQK 143
           +TV+FG+CKFPENFTGCQDLAKQK
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQK 142

The following BLAST results are available for this feature:

BLAST of HG10016899 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441057.1	1.7e-87	98.83	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]...	[more]
XP_038883748.1	5.1e-87	98.25	photosystem I reaction center subunit N, chloroplastic isoform X1 [Benincasa his...	[more]
XP_004148659.1	2.1e-85	95.91	photosystem I reaction center subunit N, chloroplastic [Cucumis sativus] >KGN483...	[more]
XP_022950888.1	1.5e-83	93.57	photosystem I reaction center subunit N, chloroplastic-like [Cucurbita moschata]	[more]
KAG6604288.1	1.5e-83	93.57	Photosystem I reaction center subunit N, chloroplastic, partial [Cucurbita argyr...	[more]

BLAST of HG10016899 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49107	3.7e-56	65.90	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana O...	[more]
P31093	6.5e-45	67.83	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=451...	[more]
O65107	4.4e-41	82.61	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX...	[more]
Q9SBN5	2.0e-25	53.79	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067...	[more]

BLAST of HG10016899 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DQX9	8.5e-88	98.83	Photosystem I reaction center subunit N OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3B240	8.5e-88	98.83	photosystem I reaction center subunit N, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
A0A0A0KFM1	1.0e-85	95.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483300 PE=3 SV=1	[more]
A0A6J1GG47	7.4e-84	93.57	photosystem I reaction center subunit N, chloroplastic-like OS=Cucurbita moschat...	[more]
A0A6J1BT08	1.7e-83	93.57	photosystem I reaction center subunit N, chloroplastic isoform X1 OS=Momordica c...	[more]

BLAST of HG10016899 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64040.1	2.6e-57	65.90	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, puta...	[more]
AT5G64040.2	5.5e-39	61.81	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, puta...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044907	Photosystem I reaction centre subunit N superfamily	GENE3D	4.10.1190.10		coord: 87..171 e-value: 1.7E-52 score: 177.7
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 44..171 e-value: 4.0E-66 score: 221.2
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PANTHER	PTHR36814	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 1..171
None	No IPR available	PANTHER	PTHR36814:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016899.1	HG10016899.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0030093	chloroplast photosystem I
cellular_component	GO:0009522	photosystem I