HG10016869 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10016869
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 8870761 .. 8874565 (+)
RNA-Seq ExpressionHG10016869
SyntenyHG10016869
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATCACGACGGTTGAGTCTATGTCACATTTGAGATACACATCACCAACAAGAAACCACAAAGAGTGCAAGATAAAGGAATATTTATGCACATGGCAGAATGTCATAAATAAGACTGGTGACTCCCAAATTGAGCATTATATATTTGGAGTATGGTATTTAATTTAGCATATAAATGGGGTTGGTGTGTGATTTTGTATATGTCCTCTCTTAACAAACACAACATGTGAACTCTATCATCCAAATTCTCCCTTTTTAGTACAATTTATGTTTTGCTTTTCACCCTCAGCTTCCATTTCCATTCCTCTCATGTCTTCCATTTTTGCATTCATTCTTTCATTCTTTCTATGATGTGATGTGTTGGATTCAAATTCTACATTAAAACTTTAAGGATGAGAGTGAGACCATTTTTAGAAATTTAATTTTTTTTTTTTTTTTTTTTTGAAATTTTCTTGGTAGTGTTTGGTTAGACTAATCAAAAGTAGTTTTTGAAAATTTTAAGTACATAAAAAGTAAAAGTTGTACAACTATGAACGTTGAAGGCAAGATCTGGACATGATTCCTATGTCTGACCTTTATTATGCCTCAATGATGAATTTATATTTTAGGAGAAGAGATGACTTGCAAGAGAATAAAATATGCACACCGATATGGTAATAAACTTTTCTTGAGTGGAGCTATAATTATGTATTTATAAGAAGGTAAACTTAAGATTTCATGTGATTCTCTTTTGGAGTAAGCTCAAGAAAAAGGGATTACACTCAATTAGAGAAGGCTTGGGTCGACGATCTACAAAAAAAATAAAAAATAAAAAATAAAAAAAAAAATAAAAAAAAATAGGCCCTGTGAGAGAATAGGTTGTCTTAGGTCGTTCACCCTTGTTACTTTTTTTCTTTGGATCCTAGTTAGGTCCTAGATTGGATTTTTAGATTCAAAGTTCTCATCAGCTCAAATACTTGTTTTTGATATTTAGCACAACTTGAGAAATGGAAACAATTTGCCAAATAGTTTAAATTCAATCACACCCTGGCTCCTGCTGGACCCTTAATTAAAAGAAAAACAGCCACTTATACAAAAAAAAGGTTTGCAATAATTGATTAAATCCAAAAAGTGGTTGTTCCACTTCCAACCAAGTTTATATTTACTTTAACATCATCTTAATATTATTAATTACCAATCTCCTTTTCCCAAATTATTGATCTGACAAATCTTTTCATCCTTCTCCATAGTTTACAACCACCAATAAATTAAATTCTTACCAACCAAAATAATAATTTATTACAAGGCAGACCAAAATTTATTCTTCCACTAAATTAAACATTTCTTTTTACAACCACAAATATTATTCAAACAAGCTTATCCATTAATCATCACTACATTCATAGTCTTATTGAATCATTGTTGTTTAATTTAACAATTCTCTTTTACAACCACAAGTATTCAAACAACCTTACCCCATTAAACATCTCATCCATCACTAGTAGTACATTCATAAATTATAATGTAATTGAATAGTTGTTGTTTATATGGTTGAAAATCAAAATTATATTAGGGTTTAAATCTGATTTAAACTTTAAATCTTTTAATATATTCTATTTTGATATGGTTTTGTATCTAATCTTTAAATAATGACTCTTTTAATTAACACTTGAACTTTTAGAATGTCTATTTAAAGTCTCAAAATTATTAAAGAGTAATGACTTTGTGTCCTAATATGTACGACTACCTATAATATTTATTTCAAGCAAACCTATATGCAACAAGACAAAATTCAAGAAAGAACTTTGATTCAAGTTATATATTTTTTTAAAAAAATGTATATAATAACATTGAGGTCCAATTTGGTAATCATTTGGTTTTTTGTTTCAATTTTTGAAAATTAAGTATATTAATATCTCTTCCATTTCTAAATTTCTTGCTTTGTTGTCTATTTTTTTTATCAATATTTTCAAAAACCATGTCAAGCTTTGAAAACTAAAAATAGTAATTTTTAGCCCGAAACTAACTTCATTTTTTGTTTTTGGTTTTTGAAAATGAAGTCTATTTTCTGACACTTTCTTACAATTGTTTGCCTCATTCTTAAGTACAAGAGTTGAATTCTTAGCCAAATTCAAAAAACAAAAACAAGTTTTTAAAAATTTTCTTTTTTCGTTTTCAAAACTTCGCTTGATTTTTGAAAATATGGGTAAAAAGTAGACAACAAATCAAGAAATTTAGAGGTGGTAGGGGTAATATTTGTAGACTAAATTTTCAAGAACTATAAATAAAAAACCAAATGGTTACCAAACGGGACCTTAAGAACTTGTTTTTATTTTTGAAATTTAGTTAAAAATTCGACTTTGTTACTTAAGAAATACGTAAAACATTGTACGAAATTAAGAGGAAATAGACTTAATTTTCAAAAACAAAAAACAAAATAGTTACCAATCGAGACTTAAAATTTTACGTGGTTTTGATTTTTCTAATTTATCTAGCCAAAATTTTCAAAATTTATATACTTATAAAAGCTAGAATATTAACATTTACCCCTTCCAATGAAATTTTTTGTCCTCGCCCTATCATCTACAAGGACTTGAAAATTAAGAAACTGTAAATAATAATAGAATAAACCTAAATTAAGCTTATAAACTAAATGGGTTATTTCAAAATCTAAGAACCAAAATAATAGTAATCTTAAAAATTGAGAGTTTCGAAGCTAAACATTCTAAAAGTTATAACCAAAACCTTTTTATTTGATCAGAGGGATGGGAAAAAAGAGAGTGGAAAATGAAAGATATTTACATTTGAATAAGTAGTACACTAAATCTTAGCTTAAGTAAGCTTTACCTGTAATCCTAATTAATTAAAAAAAAAAAAAAAAAAAAGTTGCTTACTTGTAAGCAAAAGCAAAAGCAGCCAAAATGCTCCATCAATCACAAAAAAAAGGCCCAACCCCAAGGCCCCACAGCCCCACTTCCCACTTCAATCTCATCTACTAATACTTTCCCTATAGTTGCTTATCAAACCTTCCCGTTCCACCGGAGCAATAACAACATTCACACCCACCTCCTCCGGCGGCGGTGGGTCAACAGAGGAAGAAGTCCCCTCCGCCGCCGCCGTCGTCAGGGGAGCCTCCTGGGCGCAGCCGGCGGTGATCTTATGGCAAGTGTCAGTGAGGCAATTACGGCACTTGGGGCAAGAAGTGTGGGAGCTCAGCCACTTATCGATGCAATGAACATGGAATCCATGAAAGCACTTAGGCAATACACGAACCCGATCCCCTGCTTCGAATTCCAACAAACAAATTACGCACTCCCCATCGATTCCCCTCAATTTATTCCCCTCTTTTGAGTATTCCACTGTTGGGAATTTCTTTAAGACATTTCGTCGAACACCTTTCGGATTTACCACTAAGGCCCCACCACCACGCCCCCCTGACACGGTGGCTAGCAAAGTGGAGCACCGCATAGCGCATTTTAGGATGGCGTTGAGACCCAGAGAGCAAATCAGAGCGCAGAGGAGAACTGAAAGGACCATTACTACGTTCATGTCGAAGCTCCCGAACCCAGGACGGGGCTGCGCTAGCTCCGGTGGACTGGCGGCCGCCGTGGCGGAGGGAAGGAGGAGCCTCCTTGAATTGGAGATAGACATGTGGAATGTGGAGGAGAATGTTGAAAAATCAAAGATTGGGAGTTTTGGAATTGTAATTAATTTTGTTCTTTGTGAGAATATTGGGGGAATTTATATAGCAAAAGCGAAATTAGTGGATTGTGGGGATTGGGAGAAGAAGAAAGCTGACGTGTCCTTTTTTATATATAAATAA

mRNA sequence

ATGAGAATCACGACGGTTGAGTCTATGTCACATTTGAGATACACATCACCAACAAGAAACCACAAAGAGTGCAAGATAAAGGAATATTTATGCACATGGCAGAATGTCATAAATAAGACTGGTGACTCCCAAATTGAGCATTATATATTTGGAACATTTCGTCGAACACCTTTCGGATTTACCACTAAGGCCCCACCACCACGCCCCCCTGACACGGTGGCTAGCAAAGTGGAGCACCGCATAGCGCATTTTAGGATGGCGTTGAGACCCAGAGAGCAAATCAGAGCGCAGAGGAGAACTGAAAGGACCATTACTACGTTCATGTCGAAGCTCCCGAACCCAGGACGGGGCTGCGCTAGCTCCGGTGGACTGGCGGCCGCCGTGGCGGAGGGAAGGAGGAGCCTCCTTGAATTGGAGATAGACATGTGGAATGTGGAGGAGAATGTTGAAAAATCAAAGATTGGGAGTTTTGGAATTGTAATTAATTTTGTTCTTTGTGAGAATATTGGGGGAATTTATATAGCAAAAGCGAAATTAGTGGATTGTGGGGATTGGGAGAAGAAGAAAGCTGACGTGTCCTTTTTTATATATAAATAA

Coding sequence (CDS)

ATGAGAATCACGACGGTTGAGTCTATGTCACATTTGAGATACACATCACCAACAAGAAACCACAAAGAGTGCAAGATAAAGGAATATTTATGCACATGGCAGAATGTCATAAATAAGACTGGTGACTCCCAAATTGAGCATTATATATTTGGAACATTTCGTCGAACACCTTTCGGATTTACCACTAAGGCCCCACCACCACGCCCCCCTGACACGGTGGCTAGCAAAGTGGAGCACCGCATAGCGCATTTTAGGATGGCGTTGAGACCCAGAGAGCAAATCAGAGCGCAGAGGAGAACTGAAAGGACCATTACTACGTTCATGTCGAAGCTCCCGAACCCAGGACGGGGCTGCGCTAGCTCCGGTGGACTGGCGGCCGCCGTGGCGGAGGGAAGGAGGAGCCTCCTTGAATTGGAGATAGACATGTGGAATGTGGAGGAGAATGTTGAAAAATCAAAGATTGGGAGTTTTGGAATTGTAATTAATTTTGTTCTTTGTGAGAATATTGGGGGAATTTATATAGCAAAAGCGAAATTAGTGGATTGTGGGGATTGGGAGAAGAAGAAAGCTGACGTGTCCTTTTTTATATATAAATAA

Protein sequence

MRITTVESMSHLRYTSPTRNHKECKIKEYLCTWQNVINKTGDSQIEHYIFGTFRRTPFGFTTKAPPPRPPDTVASKVEHRIAHFRMALRPREQIRAQRRTERTITTFMSKLPNPGRGCASSGGLAAAVAEGRRSLLELEIDMWNVEENVEKSKIGSFGIVINFVLCENIGGIYIAKAKLVDCGDWEKKKADVSFFIYK
Homology
[Close]
BLAST of HG10016869 vs. NCBI nr
Match: KYP69407.1 (hypothetical protein KK1_008596, partial [Cajanus cajan])

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-04
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 0 

Query: 75  SKVEHRIAHFRMALRPREQIRAQRRTERTITTFMSKLPNPG-----RGCASSGGLAAAVA 134
           +K+EH  AH  M LRP E IRAQRRTERTITTF SK P+P            GG A  ++
Sbjct: 1   TKLEHLRAHLMMELRPSEHIRAQRRTERTITTFASKFPSPRYVSVVESWLLVGGFADWLS 60

Query: 135 -EGRRSLLELEIDMWNVEENVEKSKIGSFGIVI 162
            E R +LLE     WN   + E  ++ +   ++
Sbjct: 61  GEWRSNLLE----CWNSWTSGEVKEVAAIEFIL 89

[Close]
BLAST of HG10016869 vs. ExPASy TrEMBL
Match: A0A151TQU4 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008596 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 0 

Query: 75  SKVEHRIAHFRMALRPREQIRAQRRTERTITTFMSKLPNPG-----RGCASSGGLAAAVA 134
           +K+EH  AH  M LRP E IRAQRRTERTITTF SK P+P            GG A  ++
Sbjct: 1   TKLEHLRAHLMMELRPSEHIRAQRRTERTITTFASKFPSPRYVSVVESWLLVGGFADWLS 60

Query: 135 -EGRRSLLELEIDMWNVEENVEKSKIGSFGIVI 162
            E R +LLE     WN   + E  ++ +   ++
Sbjct: 61  GEWRSNLLE----CWNSWTSGEVKEVAAIEFIL 89

The following BLAST results are available for this feature:
BLAST of HG10016869 vs. NCBI nr
Match NameE-valueIdentityDescription
KYP69407.12.1e-0441.94hypothetical protein KK1_008596, partial [Cajanus cajan][more]
BLAST of HG10016869 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10016869 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A151TQU41.0e-0441.94Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008596 PE=4 S... [more]
BLAST of HG10016869 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10016869.1HG10016869.1mRNA