HG10016844 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016844
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 8648788 .. 8649317 (+)
RNA-Seq Expression	HG10016844
Synteny	HG10016844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTGCCCAAATGCATCCATATAAAATGCTCTCAAAACCATGTGCAATTTGCTCTTATTGTGGAAGAAACAGAGCCATCTAAATCAAGAGAGTTTGAGATGGCTATGAATTGCAGATTTCTTGTGATTGTGGCTTTACTTCTGCTCTATTTTGCTTCAACCACAGTTACAGGTAAGGTAAAAAAAACCATCTCACCAATTTCTTGTGGTTGTTGCTGTCTTGGAACAAAATCAAAATTGATTTTCAATAGTAATTTTCCAACTCTAGAGTCTTGAACAAATAATGATGATTTGTATGACGTAGTTTCGGAACAACTTTGTTTATAAGCACTTGAAAAGTCATTTCAAACGGGTCTTAAATTAGTTGTTTTGCAGGAAGAAGCACGAGAGTAGTGTTAACGAAGGAAGGACAAGAAAAACCAAAAGATCTTATAGTGCACAAAAATAAGGAGAAGATGCAAAGCAGTGATGAGTTGGTGGCAATGGATTACAATCCTACTTCAAGGAGGCCTCCAATCCACAACTGA

mRNA sequence

ATGGCATTGCCCAAATGCATCCATATAAAATGCTCTCAAAACCATGTGCAATTTGCTCTTATTGTGGAAGAAACAGAGCCATCTAAATCAAGAGAGTTTGAGATGGCTATGAATTGCAGATTTCTTGTGATTGTGGCTTTACTTCTGCTCTATTTTGCTTCAACCACAGTTACAGGAAGAAGCACGAGAGTAGTGTTAACGAAGGAAGGACAAGAAAAACCAAAAGATCTTATAGTGCACAAAAATAAGGAGAAGATGCAAAGCAGTGATGAGTTGGTGGCAATGGATTACAATCCTACTTCAAGGAGGCCTCCAATCCACAACTGA

Coding sequence (CDS)

ATGGCATTGCCCAAATGCATCCATATAAAATGCTCTCAAAACCATGTGCAATTTGCTCTTATTGTGGAAGAAACAGAGCCATCTAAATCAAGAGAGTTTGAGATGGCTATGAATTGCAGATTTCTTGTGATTGTGGCTTTACTTCTGCTCTATTTTGCTTCAACCACAGTTACAGGAAGAAGCACGAGAGTAGTGTTAACGAAGGAAGGACAAGAAAAACCAAAAGATCTTATAGTGCACAAAAATAAGGAGAAGATGCAAAGCAGTGATGAGTTGGTGGCAATGGATTACAATCCTACTTCAAGGAGGCCTCCAATCCACAACTGA

Protein sequence

MALPKCIHIKCSQNHVQFALIVEETEPSKSREFEMAMNCRFLVIVALLLLYFASTTVTGRSTRVVLTKEGQEKPKDLIVHKNKEKMQSSDELVAMDYNPTSRRPPIHN

Homology

[Close]

BLAST of HG10016844 vs. NCBI nr
Match: KAG6604255.1 (hypothetical protein SDJN03_04864, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-18
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 35  MAMNCRFLVIVALLLLYFASTTVTGRSTRVVLTKEGQEKPKDLIVHKNKE-KMQSSDELV 94
           MA+NCRFLV VAL LL FASTTVTGRS RVV  +EG E+P+DL+VH NK+ KM+ SD+LV
Sbjct: 1   MAVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGDERPEDLLVHTNKDKKMEGSDQLV 60

Query: 95  AMDYNPTSRRPPIHN 109
            MDY P  +RPPIHN
Sbjct: 61  VMDYTPALKRPPIHN 75

[Close]

BLAST of HG10016844 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 35  MAMNCRFLVIVALLLLYFASTTVTGRSTRVVLTKEGQEKPK---DLIVHKNKEKMQSSDE 94
           MAMN R LV+V +LL  F++  +  RS  V   K+   K K   DL VH+ +E   S+D+
Sbjct: 1   MAMNKRVLVLVLVLLCSFSNKVIATRSLGVPQIKKDDHKLKGNDDLAVHE-EEHFSSTDD 60

Query: 95  LVAMDYNPTSRRPPIHN 109
           L AMDY P S++PPIHN
Sbjct: 61  LGAMDYTPASKKPPIHN 76

[Close]

BLAST of HG10016844 vs. ExPASy TrEMBL
Match: A0A7N2LZG7 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-04
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 39  CRFLVIVALLLLYFASTTVTGRSTRVVLTKEGQEKPKDLIVHKNKEKMQSSDELVAMDYN 98
           C+ +++V  +LL F + T   RS + V+T+E  +   DL    N+E  + +DELV++DY 
Sbjct: 4   CKRILLVTFVLLCFITITAEARSLQGVVTREAPKGHDDLFT-PNQEHEEDNDELVSVDYT 63

Query: 99  PTSRRPPIHN 109
           PT + PPIHN
Sbjct: 64  PTKKNPPIHN 72

[Close]

BLAST of HG10016844 vs. ExPASy TrEMBL
Match: A0A5N6QIB5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002786 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CRFLVIVALLLLYFASTTVTGRSTRVVLTKEGQEKPK---DLIVHKNKEKMQSSDELVAM 98
           C+ L+++A LLL F S T T R+    L +   E PK   D I      ++  SDELV+M
Sbjct: 4   CKRLLLLAFLLLCFISITATARN----LPRASNEAPKGYVDQITPNQDHEVLDSDELVSM 63

Query: 99  DYNPTSRRPPIHN 109
           DY PT + PPIHN
Sbjct: 64  DYTPTKKNPPIHN 72

The following BLAST results are available for this feature:

BLAST of HG10016844 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604255.1	3.2e-18	69.33	hypothetical protein SDJN03_04864, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571377.1	1.2e-04	46.75	hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10016844 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10016844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2LZG7	6.3e-04	40.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5N6QIB5	8.2e-04	43.84	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002786 PE=4 SV=1	[more]

BLAST of HG10016844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..108
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 36..108
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 36..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016844.1	HG10016844.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008083	growth factor activity