HG10016794 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016794
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L13
Location	Chr03: 8138903 .. 8141922 (+)
RNA-Seq Expression	HG10016794
Synteny	HG10016794

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCAGAAAGCACTTGCTGGCTTGAGACGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGACCAGGTTAGAGCAATATTAACACTTCGCTTGACATTTGGTTTTTCAGATTTTGAGGAAGAATGTTCAACAGTAATGATATTTGCTAGAAACAAATACAGCTGCTCTAACTTTTTCTACCAGGTTCTTGGGAGATTGGCATCTCAAATATCCACCGTTATTCAAGGCAAGGATAAGCCAACATATACACCCAATCGAGATGATGGAGATATGTGCATTGTGCTTAATGCCAAGGATATCGCTATCACAGGAAGAAAACTCACTCAAAAAGTTCATTACTGGCATACTGGGTAAGTACTATATGTTTTTGTAGTTTTACTCAAATTATTGGTCATTGGCACGTACTCTGAAGTTTGTTAATTATCTTAACGACATTTGTTTTATTGAAATTTTAGCTTTTGGTTGAATCTAAATGGCTTAGGGGGCTTGTTTGGATTGATTTTCCAAGGCTTATGAAGATTTTGTTTTGCACTTGAAAACCTTTTTAAAGCACCTAAAAAGTCAACTATCCGTGGCTTGTAGGTACGTTGGTAACCTGAAGGAAAGAAATTTGAAGGATCAGATGGCCAAAGATCCTACAGAAGTCATTCGTAGAGCCGTATTGCGCATGCTTCCAAAAAATAAATTGCGTGATGTTAGTTCTTAAATTTATTTGGTGTTTGAGATTTTCTGTTACCTAATGGAGGATTAGCTTCAGTTTTTGATAAAATCTCTATCCTTTTTCCTCGGGCATTGTACAGTACAGGTATTTCATATTAGAACTTGTATTTGATGCAGGATAGAGATCGAAAACTGAGAATTTTCGCTGGTGATGAACACCCTTTTGGCGACCGCCCACTTGAGCCCTATATCATGCCACCGCGTAATGTAAGAGAGATCCGTCCTCGGGTAAGACGAGCCATGATTCGATCACGAATGAAGGCCGAGGAACAACAAAACAGTGAGAATAATGGAAAGAAAAGTAGAAAGAAAGAAGAGAAGGTAGAAGTGATTGCATAAAACAAGGCCTGATTCCTTCTGTCCTAATGGGAGTTTTGTGTGGATGGATCATCAGCCATGGCAGATCTGAATTAGTTTGAATTGCATCAGGGTTGCCTTTTAATGGAACCGAGTAGCTTGGATTTGATATCATTTGTAAAGATATGATGCCATACTTGTTCAATGCTTGAAATTCCAAGGGAATGTCTAGTTTTTGTTGGGATTAACGAATCCTTTGTTGAGATTTGTAGCTTTTGCTTAGATGCAACTAATAAGTTATTCTATTGCCATTACATTTTACAATCACTTCGAATTATGCTTCTCTTTTAAAGATGAATAGACATGGTGAAGGTGCTAAAAACAGAATGTAATGTAACAAAGATTTAATATTTACATTTTACGGAAACCATTGTTAGAAAAAAGTAATGGAAAGCTAAAGTAAGCTCTGCTCATCGGTATTGTATATACTCTTTCTCTCTTTCTTGAGATTGAAGGTTCAAAAATCTTGCTACTTATTTTGGTAATTGGTTAGTTCATATTAGTTTATGTATTTGTAATGTCCAGTTTTAGTTCATGTATTTTCAAAAAATTTTAAATTTAGTCTCGGTCTATTTTTTCAAAACTTTTTATTAATTATTAGGCATATTCATATATTATATTTTATTGCATGAAAATTATTATTGATATTTAGCTAATGTCGATAAAAATTAACTTTGATAGACTAATTTAAGATTTATTGAAAGTACAGAGACTAAAATTGAAGAAACTTCAAAGTAGATGGATTATTCTTAAACCTATTCTTGAAAACTCAGGAACTAAAATGACTAATGGTATTTTTTTTCCTTATTATTATTAAATTACAAATTTAGTTCTTGAATTTTGAGGATTGTGTCTCTAATTGATCCTTGAACAATTAAAATTACAAAATTAGTCTTTCAACATTTAACTTTTTTTAAATACATGAATCTACTCGACATAAAATTGAAAGTTTAAGGTTATATAAACATAAAACAAATTTATATCTAATAAATCAATTAAATTTTTAACAAACAAAATTGAATTTATCAATGAATATATTAGACACAAAATAAAAATTTTAGAAAAGTATTAAAAGTTGAAAAACCAAACATGTAAACTTAATTGTTTGTCATTACAATAAATCTAAACTTGCAAATCTCAAATGCTTATATGTTGGCAAGGTCATCATTATTTTATTTTGAATTATGTCAAAATTAGGCAAGTTTTAGTTGATTTGGATTAGATTGTTGGGTTCTATTTCTCCCACATCGAAAAGACGTAGAAAATTACTCTTTTTTATGAAAGGACTTGAATCCCAAGCAACCGCCGAGCTTCGTTGCGCGAGCTTGTAACCCAAGTGGGGGCATTAATGTGATGGAATGGGGATCTCACTCTATTTGGGCCGGATCTGATTTGGCGTCTCGGGGCCGCCCATTTCAAGCATCGAGTTCAGCCATGGGGCTTGGGCGAAGGCCCAATAGCTTCAATGGGCTACTAGAGGGGAGGGGAATGCGTGAGGCTGGTTTCACAGAGCAACGAAAACCTCCCTCTCCTTGCATTGGAAGGATAACGGGCCGTGTCAGTCGGGTCCAATTTCGCTCGGTGGGGTGGCCCTCACCGAACCATCATTTTTTTTTTTTTATTAATTTTATTTTTGAAAATTTAGTTCACAATTTTATAACAAATTTTAGTCAAATTCTAAAAATAAATACTATATTTAGTTTGCAGTAGATAAAGATAATTACAATAGGTGATGCCTATGGAAAAGATTTAGATTAGTGGATTAGGCGCAATTCATGACCCTACACTATTTTAAGGTGTCGAGTCTCCCTGTTCGCTATTCTATAATTCTTGTTTAGGTAGAAAGAGGTCCTTTTGATTTTATTAGGCTGCTAACTTTACCAGCTATAGGAGGTTATCGACTACCTACTTTTATGTTGCCTTCATAA

mRNA sequence

ATGTTCCAGAAAGCACTTGCTGGCTTGAGACGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGACCAGGTTCTTGGGAGATTGGCATCTCAAATATCCACCGTTATTCAAGGCAAGGATAAGCCAACATATACACCCAATCGAGATGATGGAGATATGTGCATTGTGCTTAATGCCAAGGATATCGCTATCACAGGAAGAAAACTCACTCAAAAAGTTCATTACTGGCATACTGGGTACGTTGGTAACCTGAAGGAAAGAAATTTGAAGGATCAGATGGCCAAAGATCCTACAGAAGTCATTCGTAGAGCCGTATTGCGCATGCTTCCAAAAAATAAATTGCGTGATGATAGAGATCGAAAACTGAGAATTTTCGCTGGTGATGAACACCCTTTTGGCGACCGCCCACTTGAGCCCTATATCATGCCACCGCGTAATGTAAGAGAGATCCGTCCTCGGGTAAGACGAGCCATGATTCGATCACGAATGAAGGCCGAGGAACAACAAAACAGTGAGAATAATGGAAAGAAAAGTAGAAAGAAAGAAGAGAAGGACTTGAATCCCAAGCAACCGCCGAGCTTCGTTGCGCGAGCTTGTAACCCAAGTGGGGGCATTAATGTGATGGAATGGGGATCTCACTCTATTTGGGCCGGATCTGATTTGGCGTCTCGGGGCCGCCCATTTCAAGCATCGAGTTCAGCCATGGGGCTTGGGCGAAGGCCCAATAGCTTCAATGGGCTACTAGAGGGGAGGGGAATGCGTGAGGCTGGTTTCACAGAGCAACGAAAACCTCCCTCTCCTTGCATTGGAAGGATAACGGGCCGTGTAGAAAGAGGTCCTTTTGATTTTATTAGGCTGCTAACTTTACCAGCTATAGGAGGTTATCGACTACCTACTTTTATGTTGCCTTCATAA

Coding sequence (CDS)

ATGTTCCAGAAAGCACTTGCTGGCTTGAGACGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGACCAGGTTCTTGGGAGATTGGCATCTCAAATATCCACCGTTATTCAAGGCAAGGATAAGCCAACATATACACCCAATCGAGATGATGGAGATATGTGCATTGTGCTTAATGCCAAGGATATCGCTATCACAGGAAGAAAACTCACTCAAAAAGTTCATTACTGGCATACTGGGTACGTTGGTAACCTGAAGGAAAGAAATTTGAAGGATCAGATGGCCAAAGATCCTACAGAAGTCATTCGTAGAGCCGTATTGCGCATGCTTCCAAAAAATAAATTGCGTGATGATAGAGATCGAAAACTGAGAATTTTCGCTGGTGATGAACACCCTTTTGGCGACCGCCCACTTGAGCCCTATATCATGCCACCGCGTAATGTAAGAGAGATCCGTCCTCGGGTAAGACGAGCCATGATTCGATCACGAATGAAGGCCGAGGAACAACAAAACAGTGAGAATAATGGAAAGAAAAGTAGAAAGAAAGAAGAGAAGGACTTGAATCCCAAGCAACCGCCGAGCTTCGTTGCGCGAGCTTGTAACCCAAGTGGGGGCATTAATGTGATGGAATGGGGATCTCACTCTATTTGGGCCGGATCTGATTTGGCGTCTCGGGGCCGCCCATTTCAAGCATCGAGTTCAGCCATGGGGCTTGGGCGAAGGCCCAATAGCTTCAATGGGCTACTAGAGGGGAGGGGAATGCGTGAGGCTGGTTTCACAGAGCAACGAAAACCTCCCTCTCCTTGCATTGGAAGGATAACGGGCCGTGTAGAAAGAGGTCCTTTTGATTTTATTAGGCTGCTAACTTTACCAGCTATAGGAGGTTATCGACTACCTACTTTTATGTTGCCTTCATAA

Protein sequence

MFQKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKDLNPKQPPSFVARACNPSGGINVMEWGSHSIWAGSDLASRGRPFQASSSAMGLGRRPNSFNGLLEGRGMREAGFTEQRKPPSPCIGRITGRVERGPFDFIRLLTLPAIGGYRLPTFMLPS

Homology

[Close]

BLAST of HG10016794 vs. NCBI nr
Match: XP_038883187.1 (50S ribosomal protein L13 isoform X2 [Benincasa hispida])

HSP 1 Score: 341.3 bits (874), Expect = 8.8e-90
Identity = 171/186 (91.94%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           QKALAGLRRINLEGLRWRVFDAK QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN
Sbjct: 34  QKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 93

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDIA+TGRKLT KV+YWHTGYVGNLKERNLKDQMAKDPTEVIR+AVLRMLPKNKLRDDR
Sbjct: 94  AKDIAVTGRKLTDKVYYWHTGYVGNLKERNLKDQMAKDPTEVIRKAVLRMLPKNKLRDDR 153

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPR VRE+RP+VRRAMIR++ KAE+QQNS N  KKS
Sbjct: 154 DRKLRIFAGDEHPFGDRPLEPYIMPPRKVREMRPQVRRAMIRAQKKAEQQQNSANVVKKS 213

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 214 RKKEEK 219

[Close]

BLAST of HG10016794 vs. NCBI nr
Match: XP_038883186.1 (50S ribosomal protein L13 isoform X1 [Benincasa hispida])

HSP 1 Score: 341.3 bits (874), Expect = 8.8e-90
Identity = 171/186 (91.94%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           QKALAGLRRINLEGLRWRVFDAK QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN
Sbjct: 44  QKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 103

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDIA+TGRKLT KV+YWHTGYVGNLKERNLKDQMAKDPTEVIR+AVLRMLPKNKLRDDR
Sbjct: 104 AKDIAVTGRKLTDKVYYWHTGYVGNLKERNLKDQMAKDPTEVIRKAVLRMLPKNKLRDDR 163

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPR VRE+RP+VRRAMIR++ KAE+QQNS N  KKS
Sbjct: 164 DRKLRIFAGDEHPFGDRPLEPYIMPPRKVREMRPQVRRAMIRAQKKAEQQQNSANVVKKS 223

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 224 RKKEEK 229

[Close]

BLAST of HG10016794 vs. NCBI nr
Match: XP_038883188.1 (50S ribosomal protein L13 isoform X3 [Benincasa hispida])

HSP 1 Score: 339.7 bits (870), Expect = 2.6e-89
Identity = 170/186 (91.40%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           +KALAGLRRINLEGLRWRVFDAK QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN
Sbjct: 14  KKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 73

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDIA+TGRKLT KV+YWHTGYVGNLKERNLKDQMAKDPTEVIR+AVLRMLPKNKLRDDR
Sbjct: 74  AKDIAVTGRKLTDKVYYWHTGYVGNLKERNLKDQMAKDPTEVIRKAVLRMLPKNKLRDDR 133

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPR VRE+RP+VRRAMIR++ KAE+QQNS N  KKS
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRKVREMRPQVRRAMIRAQKKAEQQQNSANVVKKS 193

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 194 RKKEEK 199

[Close]

BLAST of HG10016794 vs. NCBI nr
Match: XP_011657807.1 (uncharacterized protein LOC101204778 [Cucumis sativus] >XP_011657808.1 uncharacterized protein LOC101204778 [Cucumis sativus] >KGN48451.1 hypothetical protein Csa_004216 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 5.4e-87
Identity = 162/186 (87.10%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           +KALAGL+RINLEGLRWRVFDAK QVLGRLASQISTVIQGKDKPTY PNRDDGDMCIVLN
Sbjct: 14  KKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 73

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDIA+TGRKLT+KV+YWHTGYVGNLKER L++QM +DPTEVIR+AVLRMLPKNKLRDDR
Sbjct: 74  AKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAVLRMLPKNKLRDDR 133

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RP+VRRAMIR++  AE+QQN++N GK+S
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMAEQQQNNKNEGKES 193

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 194 RKKEEK 199

[Close]

BLAST of HG10016794 vs. NCBI nr
Match: XP_022133371.1 (uncharacterized protein LOC111005959 [Momordica charantia])

HSP 1 Score: 331.6 bits (849), Expect = 7.0e-87
Identity = 162/186 (87.10%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           +KALAGLRRINLEGLRWRVFDAK QVLGRLASQISTV+QGKDKPTYTPNRDDGDMCIVLN
Sbjct: 14  KKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYTPNRDDGDMCIVLN 73

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDI +TGRKLT K ++WHTGYVGNLKER+LKDQ+AKDPTEVIR+AVLRMLP+NKLRDDR
Sbjct: 74  AKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKLRDDR 133

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPRVRRAMIR++ KAE+Q N  N  +KS
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKAEQQTNGSNESRKS 193

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 194 RKKEEK 199

[Close]

BLAST of HG10016794 vs. ExPASy Swiss-Prot
Match: Q1AU63 (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=rplM PE=3 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 1.9e-31
Identity = 62/127 (48.82%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 18  RWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKV 77
           +W V DA+ + LGRLA++IS +++GK+KP YTP+ D GD  +V+NA  + +TGRK  QKV
Sbjct: 14  KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73

Query: 78  HYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFG 137
           + WHTGY G L+ER+ +  + K P E++R+AV  M+PK +L   + +KLRI+AG EHP  
Sbjct: 74  YRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHA 133

Query: 138 DRPLEPY 145
            +  EPY
Sbjct: 134 GQTPEPY 140

[Close]

BLAST of HG10016794 vs. ExPASy Swiss-Prot
Match: B8G6P5 (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=rplM PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.4e-31
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 19  WRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVH 78
           W V DA  +VLGRLA+QIST+++GK KPT+TP+ D GD  IV+NA+ I +TGRK  QK++
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIY 74

Query: 79  YWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGD 138
           Y H+GY G LKE   K  +AK P  ++R AV RMLPKN++      KLRI+AG  HP   
Sbjct: 75  YRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 139 RPLEPYI 146
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of HG10016794 vs. ExPASy Swiss-Prot
Match: A9WH96 (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) OX=324602 GN=rplM PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30
Identity = 66/127 (51.97%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 19  WRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVH 78
           W V DA  +VLGRLA+QIST+++GK KPT+TP+ D GD  IV+NA+ I +TGRK  QK++
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74

Query: 79  YWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGD 138
           Y HTGY G +K    K  +AK P  ++R AV RMLPKN++      KLRI+AG  HP   
Sbjct: 75  YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 139 RPLEPYI 146
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of HG10016794 vs. ExPASy Swiss-Prot
Match: B9LJG2 (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) OX=480224 GN=rplM PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30
Identity = 66/127 (51.97%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 19  WRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVH 78
           W V DA  +VLGRLA+QIST+++GK KPT+TP+ D GD  IV+NA+ I +TGRK  QK++
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74

Query: 79  YWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGD 138
           Y HTGY G +K    K  +AK P  ++R AV RMLPKN++      KLRI+AG  HP   
Sbjct: 75  YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 139 RPLEPYI 146
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of HG10016794 vs. ExPASy Swiss-Prot
Match: Q18CJ1 (50S ribosomal protein L13 OS=Clostridioides difficile (strain 630) OX=272563 GN=rplM PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.7e-30
Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 18  RWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKV 77
           +W + DA+ + LGRLA++I+TV++GK KPT+TP+ D GD  +V+NA+ I ++G+KL QK 
Sbjct: 14  KWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKY 73

Query: 78  HYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEH 135
           + +HTGYVG LKE + +D M K P EVI  AV  MLPKNKLR     +LR+FAG EH
Sbjct: 74  YRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEH 130

[Close]

BLAST of HG10016794 vs. ExPASy TrEMBL
Match: A0A0A0KL19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487720 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 2.6e-87
Identity = 162/186 (87.10%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           +KALAGL+RINLEGLRWRVFDAK QVLGRLASQISTVIQGKDKPTY PNRDDGDMCIVLN
Sbjct: 14  KKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 73

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDIA+TGRKLT+KV+YWHTGYVGNLKER L++QM +DPTEVIR+AVLRMLPKNKLRDDR
Sbjct: 74  AKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAVLRMLPKNKLRDDR 133

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RP+VRRAMIR++  AE+QQN++N GK+S
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMAEQQQNNKNEGKES 193

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 194 RKKEEK 199

[Close]

BLAST of HG10016794 vs. ExPASy TrEMBL
Match: A0A6J1BUX0 (uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005959 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 3.4e-87
Identity = 162/186 (87.10%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           +KALAGLRRINLEGLRWRVFDAK QVLGRLASQISTV+QGKDKPTYTPNRDDGDMCIVLN
Sbjct: 14  KKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYTPNRDDGDMCIVLN 73

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDI +TGRKLT K ++WHTGYVGNLKER+LKDQ+AKDPTEVIR+AVLRMLP+NKLRDDR
Sbjct: 74  AKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKLRDDR 133

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPRVRRAMIR++ KAE+Q N  N  +KS
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKAEQQTNGSNESRKS 193

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 194 RKKEEK 199

[Close]

BLAST of HG10016794 vs. ExPASy TrEMBL
Match: A0A6J1KX97 (uncharacterized protein LOC111497191 OS=Cucurbita maxima OX=3661 GN=LOC111497191 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.8e-86
Identity = 159/186 (85.48%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           ++ALAG++RINLEGLRWRVFDAK QVLGRLASQISTVIQGKDKPTY PNRDDGDMCIVLN
Sbjct: 14  KRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 73

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDI ++GRK T K++YWHTGYVGNLKER+LKDQMAKDPTEVIR+AVLRMLP+NKLRDDR
Sbjct: 74  AKDIYVSGRKPTDKIYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 133

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIR++ KAE+QQN +N+ KK+
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNDDNHSKKN 193

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 194 RKKEEK 199

[Close]

BLAST of HG10016794 vs. ExPASy TrEMBL
Match: A0A6J1CC45 (uncharacterized protein LOC111010318 OS=Momordica charantia OX=3673 GN=LOC111010318 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.8e-86
Identity = 160/186 (86.02%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           +KALAGLRRINLEGLRWRVFDAK QVLGRLASQISTV+QGKDKPTY PNRDDGDMCIVLN
Sbjct: 14  KKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLN 73

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDI +TGRKLT K ++WHTGYVGNLKER+LKDQ+AKDPTEVIR+AVLRMLP+N+LRDDR
Sbjct: 74  AKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNELRDDR 133

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPRVRRAMIR++ KAE+Q N  N  +KS
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKAEQQTNGNNESRKS 193

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 194 RKKEEK 199

[Close]

BLAST of HG10016794 vs. ExPASy TrEMBL
Match: A0A1S3B177 (50S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103484711 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.9e-85
Identity = 160/186 (86.02%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           +KALAGL+RINLEGLRWRVFDAK QVLGRLAS+ISTVIQGKDKPTYTPNRDDGDMCIVLN
Sbjct: 14  KKALAGLKRINLEGLRWRVFDAKGQVLGRLASKISTVIQGKDKPTYTPNRDDGDMCIVLN 73

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AKDIA+TGRKLT+KV+YWHTGYVG+LKER L++QM +DPTEVIR+AVLRMLPKNKLRDDR
Sbjct: 74  AKDIAVTGRKLTKKVYYWHTGYVGHLKERTLREQMNRDPTEVIRKAVLRMLPKNKLRDDR 133

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RP+VRRAMIR++ KAE+Q+NS++  K S
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKKAEQQENSKSERKGS 193

Query: 183 RKKEEK 189
           RKKEEK
Sbjct: 194 RKKEEK 199

[Close]

BLAST of HG10016794 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 284.6 bits (727), Expect = 9.2e-77
Identity = 136/183 (74.32%), Postives = 160/183 (87.43%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           +KA+AG++RINL+GLRWRVFDA+ QVLGRLASQISTV+Q KDKPTY PNRDDGD+CIVLN
Sbjct: 16  KKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLN 75

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AK+I  TGRKLT K + WHTGY+G+LKER+LKDQMAKDPTEVIR+AV RMLP N LRDDR
Sbjct: 76  AKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDR 135

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIF G EHPFGD+PLEP++MPPR VRE+RPR RRAMIR++ KAE+ +N     KK 
Sbjct: 136 DRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQKKAEQAENEGTEVKKG 195

Query: 183 RKK 186
           +K+
Sbjct: 196 KKR 198

[Close]

BLAST of HG10016794 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 284.6 bits (727), Expect = 9.2e-77
Identity = 136/183 (74.32%), Postives = 160/183 (87.43%), Query Frame = 0


Query: 3   QKALAGLRRINLEGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN 62
           +KA+AG++RINL+GLRWRVFDA+ QVLGRLASQISTV+Q KDKPTY PNRDDGD+CIVLN
Sbjct: 16  KKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLN 75

Query: 63  AKDIAITGRKLTQKVHYWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDR 122
           AK+I  TGRKLT K + WHTGY+G+LKER+LKDQMAKDPTEVIR+AV RMLP N LRDDR
Sbjct: 76  AKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDR 135

Query: 123 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKS 182
           DRKLRIF G EHPFGD+PLEP++MPPR VRE+RPR RRAMIR++ KAE+ +N     KK 
Sbjct: 136 DRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQKKAEQAENEGTEVKKG 195

Query: 183 RKK 186
           +K+
Sbjct: 196 KKR 198

[Close]

BLAST of HG10016794 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-18
Identity = 49/135 (36.30%), Postives = 78/135 (57.78%), Query Frame = 0


Query: 19  WRVFDAKDQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVH 78
           W V DA D++LGRLAS I+  I+GK+  +YTP+ D G   IV+NA+ +A++G+K  QK++
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164

Query: 79  YWHTGYVGNLKERNLKDQMAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPF-G 138
             H+G  G +          + P  ++  AV  MLPK +L       L+++ G +HP   
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224

Query: 139 DRPLEPYIMPPRNVR 153
            +PL+   +P R+ R
Sbjct: 225 QKPLD---LPIRDKR 236

The following BLAST results are available for this feature:

BLAST of HG10016794 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883187.1	8.8e-90	91.94	50S ribosomal protein L13 isoform X2 [Benincasa hispida]	[more]
XP_038883186.1	8.8e-90	91.94	50S ribosomal protein L13 isoform X1 [Benincasa hispida]	[more]
XP_038883188.1	2.6e-89	91.40	50S ribosomal protein L13 isoform X3 [Benincasa hispida]	[more]
XP_011657807.1	5.4e-87	87.10	uncharacterized protein LOC101204778 [Cucumis sativus] >XP_011657808.1 uncharact...	[more]
XP_022133371.1	7.0e-87	87.10	uncharacterized protein LOC111005959 [Momordica charantia]	[more]

BLAST of HG10016794 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1AU63	1.9e-31	48.82	50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16...	[more]
B8G6P5	7.4e-31	52.76	50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX...	[more]
A9WH96	1.3e-30	51.97	50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 6...	[more]
B9LJG2	1.3e-30	51.97	50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 6...	[more]
Q18CJ1	3.7e-30	53.85	50S ribosomal protein L13 OS=Clostridioides difficile (strain 630) OX=272563 GN=...	[more]

BLAST of HG10016794 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL19	2.6e-87	87.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487720 PE=3 SV=1	[more]
A0A6J1BUX0	3.4e-87	87.10	uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1KX97	3.8e-86	85.48	uncharacterized protein LOC111497191 OS=Cucurbita maxima OX=3661 GN=LOC111497191...	[more]
A0A6J1CC45	3.8e-86	86.02	uncharacterized protein LOC111010318 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A1S3B177	1.9e-85	86.02	50S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103484711 PE=3 SV=1	[more]

BLAST of HG10016794 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01790.1	9.2e-77	74.32	Ribosomal protein L13 family protein	[more]
AT3G01790.2	9.2e-77	74.32	Ribosomal protein L13 family protein	[more]
AT1G78630.1	1.5e-18	36.30	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 16..156 e-value: 2.3E-58 score: 198.3
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 18..140
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 18..135 e-value: 7.9E-44 score: 148.6
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 3..173
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 19..142 score: 25.752506
IPR005822	Ribosomal protein L13	CDD	cd00392	Ribosomal_L13	coord: 19..132 e-value: 9.21391E-55 score: 171.919
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAM	TIGR01066	TIGR01066	coord: 18..136 e-value: 1.1E-43 score: 146.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..192
None	No IPR available	PANTHER	PTHR11545:SF2	39S RIBOSOMAL PROTEIN L13, MITOCHONDRIAL	coord: 3..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016794.1	HG10016794.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009725	response to hormone
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome