HG10016740 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016740
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	tRNA Delta(2)-isopentenylpyrophosphate transferase, putative
Location	Chr03: 7661319 .. 7661597 (-)
RNA-Seq Expression	HG10016740
Synteny	HG10016740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGAGAAGTGGTAGGGTTTGTGGGGTTTGTGTTATGATTATTGTTTTGGTTTTATGTTTAACCCATGAGGGGGTTTACGTAGAATGCCGGCATTTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGGTCAGTGTTCCGCCGCAGCCGGTTAATCGGAATTCCGCCGGAAATGGTCAACAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGA

mRNA sequence

ATGATGAAGAGAAGTGGTAGGGTTTGTGGGGTTTGTGTTATGATTATTGTTTTGGTTTTATGTTTAACCCATGAGGGGGTTTACGTAGAATGCCGGCATTTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGGTCAGTGTTCCGCCGCAGCCGGTTAATCGGAATTCCGCCGGAAATGGTCAACAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGA

Coding sequence (CDS)

ATGATGAAGAGAAGTGGTAGGGTTTGTGGGGTTTGTGTTATGATTATTGTTTTGGTTTTATGTTTAACCCATGAGGGGGTTTACGTAGAATGCCGGCATTTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGGTCAGTGTTCCGCCGCAGCCGGTTAATCGGAATTCCGCCGGAAATGGTCAACAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGA

Protein sequence

MMKRSGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKLVSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

Homology

[Close]

BLAST of HG10016740 vs. NCBI nr
Match: KAE8647497.1 (hypothetical protein Csa_004238, partial [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 4.7e-31
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MMKRSGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATR-CKKCSKLV--SVPPQPVNRNS 60
          MMKR+GR CGVC+ IIVLVLCL++EGVYVECRHLK++R CKKCSK +  S PP P +  S
Sbjct: 6  MMKRNGRACGVCI-IIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKS 65

Query: 61 AGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN 93
          AGN QQF T KAELPQDFRPTSPGHSPGVGHHINN
Sbjct: 66 AGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 99

[Close]

BLAST of HG10016740 vs. NCBI nr
Match: KAG6595044.1 (hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 2  MKRSGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKLVSVP--------PQPV 61
          MK + R+ GVCV I+ L+LCL+HE VYVECRHLK++RCKKC+K ++ P          P 
Sbjct: 1  MKTTQRLSGVCVFILFLILCLSHEVVYVECRHLKSSRCKKCTKFINPPAVNLGGKKADPG 60

Query: 62 NRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN 93
          +   AGN Q+F T+KAE PQDFRPTSPGHSPGVGHHINN
Sbjct: 61 DVGLAGNRQEFKTSKAEQPQDFRPTSPGHSPGVGHHINN 99

[Close]

BLAST of HG10016740 vs. NCBI nr
Match: EOX91365.1 (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao])

HSP 1 Score: 74.3 bits (181), Expect = 6.0e-10
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 5  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKL-----VSVPPQPVNRNSAG 64
          S R+  VCV+++VL+LC       VE RHL++  CKKCS+           +  + +S G
Sbjct: 3  SYRLKNVCVLLLVLILCQEIFVYNVEGRHLRSKSCKKCSRQRADQNTLKMTKNGSHSSTG 62

Query: 65 NGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN 93
          +GQ+  T+KAE   DFRPTSPGHSPGVGH I N
Sbjct: 63 SGQE-QTSKAENIDDFRPTSPGHSPGVGHSIKN 94

[Close]

BLAST of HG10016740 vs. NCBI nr
Match: OAY33803.1 (hypothetical protein MANES_13G126300v8 [Manihot esculenta])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 7  RVCGVCVMIIVLVLCLTHEGVYVECRHLKATR-CKKCSKLVSVPPQPVNRNSAG-NGQQF 66
          RV G C+ ++VL+LC  HE + VE RHLK  + CKKC +L       V+ ++    G Q 
Sbjct: 5  RVMGTCIFLLVLMLC--HEVLVVEGRHLKPHKLCKKCFRLSDQNSLNVSEDTQKLLGGQE 64

Query: 67 MTNKAELPQDFRPTSPGHSPGVGHHINN 93
           T+K +   DFRPT PGHSPGVGH INN
Sbjct: 65 KTSKMDYVDDFRPTEPGHSPGVGHSINN 90

[Close]

BLAST of HG10016740 vs. NCBI nr
Match: OMP02045.1 (hypothetical protein COLO4_11385 [Corchorus olitorius])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 5  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSK---LVSVPPQPVNRNSAGNG 64
          S RV   CV ++VL+LC     + VE RHL++  C+KCS+     S+    +  +S  +G
Sbjct: 3  SFRVLNACVFLLVLLLCHEIFVLNVEARHLRSKGCRKCSRQRHRNSLETAKIGGHSNVSG 62

Query: 65 QQFMTNKAELPQDFRPTSPGHSPGVGHHINN 93
          Q+  +NK +   DFRPT+PGHSPGVGH INN
Sbjct: 63 QE-RSNKMDYVDDFRPTAPGHSPGVGHSINN 92

[Close]

BLAST of HG10016740 vs. ExPASy Swiss-Prot
Match: P0DN97 (Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.1e-04
Identity = 24/78 (30.77%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 12 CVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKLVSVPPQPVNRNSAGNGQQFMTNKAEL 71
          C+ ++++ + ++HE +  E RHL+  R    +  ++V        + G   +   +K E 
Sbjct: 10 CISLLIIAILVSHEIIPTEARHLRTHRKSIKNSTLTVHEGAGGLRTGGGSVKTDISKEEH 69

Query: 72 PQD-FRPTSPGHSPGVGH 89
            D FRPT+PG+SPG+GH
Sbjct: 70 GVDEFRPTTPGNSPGIGH 87

[Close]

BLAST of HG10016740 vs. ExPASy TrEMBL
Match: A0A0A0KGB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.7e-22
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 24 HEGVYVECRHLKATR-CKKCSKLV--SVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSP 83
          +EGVYVECRHLK++R CKKCSK +  S PP P +  SAGN QQF T KAELPQDFRPTSP
Sbjct: 7  YEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSP 66

Query: 84 GHSPGVGHHINN 93
          GHSPGVGHHINN
Sbjct: 67 GHSPGVGHHINN 78

[Close]

BLAST of HG10016740 vs. ExPASy TrEMBL
Match: A0A061DGB8 (tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao OX=3641 GN=TCM_000584 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-10
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 5  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKL-----VSVPPQPVNRNSAG 64
          S R+  VCV+++VL+LC       VE RHL++  CKKCS+           +  + +S G
Sbjct: 3  SYRLKNVCVLLLVLILCQEIFVYNVEGRHLRSKSCKKCSRQRADQNTLKMTKNGSHSSTG 62

Query: 65 NGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN 93
          +GQ+  T+KAE   DFRPTSPGHSPGVGH I N
Sbjct: 63 SGQE-QTSKAENIDDFRPTSPGHSPGVGHSIKN 94

[Close]

BLAST of HG10016740 vs. ExPASy TrEMBL
Match: A0A2C9URG2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G126300 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.5e-10
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 7  RVCGVCVMIIVLVLCLTHEGVYVECRHLKATR-CKKCSKLVSVPPQPVNRNSAG-NGQQF 66
          RV G C+ ++VL+LC  HE + VE RHLK  + CKKC +L       V+ ++    G Q 
Sbjct: 5  RVMGTCIFLLVLMLC--HEVLVVEGRHLKPHKLCKKCFRLSDQNSLNVSEDTQKLLGGQE 64

Query: 67 MTNKAELPQDFRPTSPGHSPGVGHHINN 93
           T+K +   DFRPT PGHSPGVGH INN
Sbjct: 65 KTSKMDYVDDFRPTEPGHSPGVGHSINN 90

[Close]

BLAST of HG10016740 vs. ExPASy TrEMBL
Match: A0A1R3K4N2 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11385 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 5  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSK---LVSVPPQPVNRNSAGNG 64
          S RV   CV ++VL+LC     + VE RHL++  C+KCS+     S+    +  +S  +G
Sbjct: 3  SFRVLNACVFLLVLLLCHEIFVLNVEARHLRSKGCRKCSRQRHRNSLETAKIGGHSNVSG 62

Query: 65 QQFMTNKAELPQDFRPTSPGHSPGVGHHINN 93
          Q+  +NK +   DFRPT+PGHSPGVGH INN
Sbjct: 63 QE-RSNKMDYVDDFRPTAPGHSPGVGHSINN 92

[Close]

BLAST of HG10016740 vs. ExPASy TrEMBL
Match: B9S8I9 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0601250 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-09
Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 10  GVCVMIIVLVLCLTHEGVY-VECRHLKATRCKKCSKL------VSVPPQPVNRNSAGNGQ 69
           G C  ++VL+LC  HE +Y VE RHLK   CKKCS+       VS            NG 
Sbjct: 14  GTCTCLLVLILC--HEAIYVVEGRHLKPKLCKKCSRRSESSLDVSKDGHHNTTTHLLNGD 73

Query: 70  QFMTNKAELPQDFRPTSPGHSPGVGHHINN 93
           Q   +K +   DFRPT+PGHSPGVGH I N
Sbjct: 74  QEKISKMDFVDDFRPTAPGHSPGVGHSIQN 101

[Close]

BLAST of HG10016740 vs. TAIR 10
Match: AT5G66816.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.9e-04
Identity = 19/40 (47.50%), Postives = 23/40 (57.50%), Query Frame = 0


Query: 56 NSAGNGQQFMTNKAE---LPQDFRPTSPGHSPGVGHHINN 93
          NS G G +   N+        DF PT+PGHSPGVGH + N
Sbjct: 57 NSPGIGHKMKENEENAGGYKDDFEPTTPGHSPGVGHAVKN 96

The following BLAST results are available for this feature:

BLAST of HG10016740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647497.1	4.7e-31	76.84	hypothetical protein Csa_004238, partial [Cucumis sativus]	[more]
KAG6595044.1	1.0e-25	61.62	hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sorori...	[more]
EOX91365.1	6.0e-10	47.31	TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao]	[more]
OAY33803.1	1.8e-09	48.86	hypothetical protein MANES_13G126300v8 [Manihot esculenta]	[more]
OMP02045.1	2.3e-09	45.05	hypothetical protein COLO4_11385 [Corchorus olitorius]	[more]

BLAST of HG10016740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN97	5.1e-04	30.77	Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1	[more]

BLAST of HG10016740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGB6	5.7e-22	76.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1	[more]
A0A061DGB8	2.9e-10	47.31	tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao ...	[more]
A0A2C9URG2	8.5e-10	48.86	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G126300 PE=3 SV=...	[more]
A0A1R3K4N2	1.1e-09	45.05	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11385 PE=3 SV=1	[more]
B9S8I9	2.5e-09	46.67	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0601250 PE=3 SV=1	[more]

BLAST of HG10016740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66816.1	6.9e-04	47.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	PANTHER	PTHR33348:SF28	PRECURSOR OF CEP7	coord: 12..92
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 12..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016740.1	HG10016740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0048364	root development