HG10016696 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10016696
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein ELI1
LocationChr03: 7176616 .. 7178544 (+)
RNA-Seq ExpressionHG10016696
SyntenyHG10016696
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCTTCTTCCTTTTTCACAGCGTCACCTCCATCGCCGCCGCCAATTTTCACCACTAACCGTTCATCTGTCTTACCGTCTTCTTCTTCCACCGCCAGAACCTCCGATCGTTTCCAACAAGTAGAACTACAAAGGTTCACCTTACTAATCGATAGATCGAAATCCGTCGACTGCCTGCTTCAAATCCACGCTTCTCTTCTCCGCAGTGGGCTTTACCACAACCCCATCTTAAATTTCAAGCTCCAACGCTCATACGCCGCTCTCGGACGCCTTGATTACTCGGTGGCTGTTTTTAACACCTTCGATGAACCCAGTGTATTTTCATTTAGTGCAATTATCCATAGCCACGTACAATGTCGATTATTTGACCGAGCTCTCGGTTACTATTCGCAAATGCTAACCCGTGGTGTGGAGCCCAATGTTTTCACCTTCTCGTCAGTCTTGAAATCCTGCTTGCTCGAACCCGGAAAGGCCCTCCATTGCCAAGCAATAAAGCTGGGGTTCGATGCTGATTTGTATGTCAGAACAGGACTGGTCGATGTATACGCGAGAGGGGGCGATGTGGTGTGCGCACGCCAACTGTTTGATAAAATGCCTGAGAGAAGTTTGGTCTCTCTAACGGCCATGCTTACTTGCTACGCGAAGCTGGGGGAGCTTGACGAGGCACGGGCTTTGTTCAACGGGATGAAAGAGAGAGATGTGGTTTGTTGGAATGTGATGATTGGTGGGTACGCGCAGAATGGTCTTCCCAATGAATCGTTGAAGCTTTTCAGGCGAATGTTGGTGGCGAAAGCTATGCCCAATGAAGTAACAGTTCTGGCTGTGCTTTCGGCATGTGGGCAACTTGGAGCCCTCGAATCTGGAAGGTGGGTTCATTCGTATATTGAGAATAAGGGCATTCAGATAAATGTTCATGTGGGCACCGCACTTGTTGATATGTATAGCAAATGTGGTAGCTTGGAAGATGCACGTTTGGTATTTGATGGGATTCGGGATAAGGATGTGGTCGCCTGGAATTCGATGATTGTTGGATATGCCATGCACGGATTTAGCCAACATGCATTGCAGTTGTTCGAGGAAATGACTGAGACCGGATACCAACCAACTGATATCACTTTCATTGGCATTTTGAGTGCTTGCAGCCATGGCGGATTGGTGGAGGAGGGAAGAAGTTTCTTCAGATTGATGAGAGATAAATACGGAACCAAACCAAAAGTCGAGCATTATGGATGTATGGTTAATCTTCTAGGGCGTGCGGGACATCTAGAGGAAGCATATGAACTCGTGAAAAACATGACGATTGCAGCCGACCCGGTTTTGTGGGGAACGTTACTTGGGTCTTGTAGACTCCATGGTAACATTAAATTGGGAGAGGAAATTGCTGAGTTTCTTGTTGACCAGAAGCTTGCAAATTCAGGGACGTATGTTCTTCTTTCCAATATATATGCTGCAACAGGCAATTGGGAAGGGGTTGCAAAGATGAGGACGTTGATGAAAGAGCATGGCATTGAAAAAGAGCCTGGTTGCAGCTCAATTGAAGTTAACAATAAGGTGCATGAGTTCCTTGCTGGTGAGAGGAAACATCCCAAAAGCAAAGAAATATATATGATGTTGAATGAGATAAATGGTTGGCTCAAAGCTCGCGGATACACACCACAGACCGATGTTGTGTTACATGATCTCAGGGAGGAACAAAAGGAGCAATCGCTCGAAGTTCACAGTGAGAAGCTTGCTATTGCCTTTGGGCTTATCAGTACTAAACCAGGCACCGCCATCAAGATTGTGAAGAACCTCCGAGTTTGTTCAGATTGCCATGCCGTAATGAAGTTGATATCAGAAATCACTGGACGTAAAATTGTAATGAGAGACCGGAATCGGTTCCATCACTTTGAAGATGGATTATGTTCTTGTGGAGATTATTGGTGA

mRNA sequence

ATGTCGTCTTCTTCCTTTTTCACAGCGTCACCTCCATCGCCGCCGCCAATTTTCACCACTAACCGTTCATCTGTCTTACCGTCTTCTTCTTCCACCGCCAGAACCTCCGATCGTTTCCAACAAGTAGAACTACAAAGGTTCACCTTACTAATCGATAGATCGAAATCCGTCGACTGCCTGCTTCAAATCCACGCTTCTCTTCTCCGCAGTGGGCTTTACCACAACCCCATCTTAAATTTCAAGCTCCAACGCTCATACGCCGCTCTCGGACGCCTTGATTACTCGGTGGCTGTTTTTAACACCTTCGATGAACCCAGTGTATTTTCATTTAGTGCAATTATCCATAGCCACGTACAATGTCGATTATTTGACCGAGCTCTCGGTTACTATTCGCAAATGCTAACCCGTGGTGTGGAGCCCAATGTTTTCACCTTCTCGTCAGTCTTGAAATCCTGCTTGCTCGAACCCGGAAAGGCCCTCCATTGCCAAGCAATAAAGCTGGGGTTCGATGCTGATTTGGAGGAACAAAAGGAGCAATCGCTCGAAGTTCACAGTGAGAAGCTTGCTATTGCCTTTGGGCTTATCAGTACTAAACCAGGCACCGCCATCAAGATTGTGAAGAACCTCCGAGTTTGTTCAGATTGCCATGCCGTAATGAAGTTGATATCAGAAATCACTGGACGTAAAATTGTAATGAGAGACCGGAATCGGTTCCATCACTTTGAAGATGGATTATGTTCTTGTGGAGATTATTGGTGA

Coding sequence (CDS)

ATGTCGTCTTCTTCCTTTTTCACAGCGTCACCTCCATCGCCGCCGCCAATTTTCACCACTAACCGTTCATCTGTCTTACCGTCTTCTTCTTCCACCGCCAGAACCTCCGATCGTTTCCAACAAGTAGAACTACAAAGGTTCACCTTACTAATCGATAGATCGAAATCCGTCGACTGCCTGCTTCAAATCCACGCTTCTCTTCTCCGCAGTGGGCTTTACCACAACCCCATCTTAAATTTCAAGCTCCAACGCTCATACGCCGCTCTCGGACGCCTTGATTACTCGGTGGCTGTTTTTAACACCTTCGATGAACCCAGTGTATTTTCATTTAGTGCAATTATCCATAGCCACGTACAATGTCGATTATTTGACCGAGCTCTCGGTTACTATTCGCAAATGCTAACCCGTGGTGTGGAGCCCAATGTTTTCACCTTCTCGTCAGTCTTGAAATCCTGCTTGCTCGAACCCGGAAAGGCCCTCCATTGCCAAGCAATAAAGCTGGGGTTCGATGCTGATTTGGAGGAACAAAAGGAGCAATCGCTCGAAGTTCACAGTGAGAAGCTTGCTATTGCCTTTGGGCTTATCAGTACTAAACCAGGCACCGCCATCAAGATTGTGAAGAACCTCCGAGTTTGTTCAGATTGCCATGCCGTAATGAAGTTGATATCAGAAATCACTGGACGTAAAATTGTAATGAGAGACCGGAATCGGTTCCATCACTTTGAAGATGGATTATGTTCTTGTGGAGATTATTGGTGA

Protein sequence

MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCLLQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQCRLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADLEEQKEQSLEVHSEKLAIAFGLISTKPGTAIKIVKNLRVCSDCHAVMKLISEITGRKIVMRDRNRFHHFEDGLCSCGDYW
Homology
BLAST of HG10016696 vs. NCBI nr
Match: XP_038882525.1 (pentatricopeptide repeat-containing protein ELI1, chloroplastic [Benincasa hispida])

HSP 1 Score: 295.4 bits (755), Expect = 4.6e-76
Identity = 154/173 (89.02%), Postives = 159/173 (91.91%), Query Frame = 0

Query: 1   MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCL 60
           M SSSF TASPP PPPIFTTNRSSVLPSSSSTARTSD FQQVE  RF LLID+SKS+  L
Sbjct: 1   MPSSSFLTASPPPPPPIFTTNRSSVLPSSSSTARTSDPFQQVE--RFALLIDKSKSIPRL 60

Query: 61  LQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQC 120
           LQIHASLLR  LYHNPILNFKLQRSYAALGRLDYSVAVFNT DEP+VFSFSAIIHSHVQC
Sbjct: 61  LQIHASLLRHRLYHNPILNFKLQRSYAALGRLDYSVAVFNTSDEPNVFSFSAIIHSHVQC 120

Query: 121 RLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL 174
           RLFD+ALGYYSQMLTRGVEPNVFTFSSVLKSC LEPGK LHCQAIKLGFD+DL
Sbjct: 121 RLFDQALGYYSQMLTRGVEPNVFTFSSVLKSCSLEPGKVLHCQAIKLGFDSDL 171

BLAST of HG10016696 vs. NCBI nr
Match: XP_038882525.1 (pentatricopeptide repeat-containing protein ELI1, chloroplastic [Benincasa hispida])

HSP 1 Score: 158.7 bits (400), Expect = 6.7e-35
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0

Query: 174 EEQKEQSLEVHSEKLAIAFGLISTKPGTAIKIVKNLRVCSDCHAVMKLISEITGRKIVMR 233
           EEQKEQSLEVHSEKLAIAFGLIST+PGT IKIVKNLRVC DCHAVMKLISEIT RKIVMR
Sbjct: 562 EEQKEQSLEVHSEKLAIAFGLISTQPGTTIKIVKNLRVCLDCHAVMKLISEITKRKIVMR 621

Query: 234 DRNRFHHFEDGLCSCGDYW 253
           DRNRFHHFEDGLCSCGDYW
Sbjct: 622 DRNRFHHFEDGLCSCGDYW 640


HSP 2 Score: 283.9 bits (725), Expect = 1.4e-72
Identity = 225/642 (35.05%), Postives = 230/642 (35.83%), Query Frame = 0

Query: 1   MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCL 60
           MSSSSFFTASPPSPP IFTTNRSSV PSSSSTA+TS RFQQVE  RF LLID+SKSV  L
Sbjct: 6   MSSSSFFTASPPSPPSIFTTNRSSVSPSSSSTAKTSGRFQQVE--RFALLIDKSKSVAHL 65

Query: 61  LQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQC 120
           LQIHASLLR GLYHNPILNFKLQRSYAALGRLD SV VFNTFDEP+VFSFSAIIHSHVQ 
Sbjct: 66  LQIHASLLRHGLYHNPILNFKLQRSYAALGRLDCSVVVFNTFDEPNVFSFSAIIHSHVQS 125

Query: 121 RLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL------- 180
           RLFDRA GYYSQML+RGVEPN FTFSSVLKSC LE GK LHCQAIKLG  +DL       
Sbjct: 126 RLFDRAFGYYSQMLSRGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLV 185

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 186 DVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDEARSLFEGMKERDVVCWNV 245

Query: 241 ------------------------------------------------------------ 253
                                                                       
Sbjct: 246 MIGGYAQNGVPNESLKLFRRMLVSKAIPNEVTVLAVLSACGQLGALESGRWVHSYIENKS 305

BLAST of HG10016696 vs. NCBI nr
Match: TYK12851.1 (pentatricopeptide repeat-containing protein ELI1 [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 4.4e-71
Identity = 224/642 (34.89%), Postives = 228/642 (35.51%), Query Frame = 0

Query: 1   MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCL 60
           MSSSSFFTASPPSPP IFTTNR SV PSSSSTARTS RFQQVE  RF LLID+SKSV  L
Sbjct: 6   MSSSSFFTASPPSPPSIFTTNRFSVSPSSSSTARTSGRFQQVE--RFALLIDKSKSVAHL 65

Query: 61  LQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQC 120
           LQIHASLLR GLYHN ILNFKLQRSYAALGRLD SV VFNTFDEP+VFSFSAIIHSHVQ 
Sbjct: 66  LQIHASLLRHGLYHNLILNFKLQRSYAALGRLDCSVVVFNTFDEPNVFSFSAIIHSHVQS 125

Query: 121 RLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL------- 180
           RLFDRA GYYSQML+RGVEPN FTFSSVLKSC LE GK LHCQAIKLG  +DL       
Sbjct: 126 RLFDRAFGYYSQMLSRGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLV 185

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 186 DVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDEARSLFEGMKERDVVCWNV 245

Query: 241 ------------------------------------------------------------ 253
                                                                       
Sbjct: 246 MIGGYAQNGVPNESLKLFRRMLVSKAIPNEVTVLAVLSACGQLGALESGRWVHSYIENKS 305

BLAST of HG10016696 vs. NCBI nr
Match: XP_022132503.1 (pentatricopeptide repeat-containing protein ELI1, chloroplastic [Momordica charantia])

HSP 1 Score: 278.1 bits (710), Expect = 7.5e-71
Identity = 217/642 (33.80%), Postives = 233/642 (36.29%), Query Frame = 0

Query: 1   MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCL 60
           MSSSSFFTA PPSPPP+ TTNRSS+LPSS STA TSDR QQVE  RF  LID+S+SV  L
Sbjct: 1   MSSSSFFTAPPPSPPPLVTTNRSSLLPSSPSTATTSDRSQQVE--RFASLIDKSRSVIRL 60

Query: 61  LQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQC 120
           LQIHASLLR GLYH+PILNFKLQRSYA +GRLDYSVAVFNT D+P+VFS+S+IIHSH QC
Sbjct: 61  LQIHASLLRQGLYHHPILNFKLQRSYATVGRLDYSVAVFNTSDDPNVFSYSSIIHSHAQC 120

Query: 121 RLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL------- 180
            LFD+AL +YSQMLTRGVEPNVFTFSSVLKSC LEPGKALHCQAIKLGFD+DL       
Sbjct: 121 GLFDQALDFYSQMLTRGVEPNVFTFSSVLKSCSLEPGKALHCQAIKLGFDSDLYVRTGLV 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 DVYARGGEVVCARQLFDKMPERSLVSLTAMLTCYTKLGELDEARALFDGMKERDVVCWNV 240

Query: 241 ------------------------------------------------------------ 253
                                                                       
Sbjct: 241 MIGGYAQNGVPNESLKLFRRMLVAKVKPNEVTVLAVLSACGQLGALESGRWVHSYIENKG 300

BLAST of HG10016696 vs. NCBI nr
Match: XP_004141894.1 (pentatricopeptide repeat-containing protein ELI1, chloroplastic [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 7.5e-71
Identity = 222/642 (34.58%), Postives = 229/642 (35.67%), Query Frame = 0

Query: 1   MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCL 60
           MSSSS FTAS PSPP IFTTNRSSVLPSSSSTARTSDRFQ+VE  RF  LID+SKSV  L
Sbjct: 6   MSSSSIFTASHPSPPSIFTTNRSSVLPSSSSTARTSDRFQEVE--RFASLIDKSKSVAHL 65

Query: 61  LQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQC 120
           LQIHASLLR GLYHNPILNFKLQRSYAALGRLD SV VFNTFDEP+VFSFSAIIHSHVQ 
Sbjct: 66  LQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQS 125

Query: 121 RLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL------- 180
           RLFDRA GYYSQML+ GVEPN FTFSSVLKSC LE GK LHCQAIKLG  +DL       
Sbjct: 126 RLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLV 185

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 186 DVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNV 245

Query: 241 ------------------------------------------------------------ 253
                                                                       
Sbjct: 246 MIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKG 305

BLAST of HG10016696 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.9e-34
Identity = 85/191 (44.50%), Postives = 110/191 (57.59%), Query Frame = 0

Query: 63  IHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQCRL 122
           I  ++  SG+Y        L   YA++G  +    V N   E  +     I    ++ ++
Sbjct: 456 IGLNIKNSGIY------VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKV 515

Query: 123 FDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADLEE-QKEQSL 182
            +   G      ++ +   +   S  +KS    P      Q        DLEE +KEQSL
Sbjct: 516 HEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQ--------DLEETEKEQSL 575

Query: 183 EVHSEKLAIAFGLISTKPGTAIKIVKNLRVCSDCHAVMKLISEITGRKIVMRDRNRFHHF 242
           +VHSE+LAIA+GLISTKPG+ +KI KNLRVCSDCH V KLIS+ITGRKIVMRDRNRFHHF
Sbjct: 576 QVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHF 632

Query: 243 EDGLCSCGDYW 253
            DG CSCGD+W
Sbjct: 636 TDGSCSCGDFW 632


HSP 2 Score: 109.4 bits (272), Expect = 6.1e-23
Identity = 59/150 (39.33%), Postives = 93/150 (62.00%), Query Frame = 0

Query: 26  LPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCLLQIHASLLRSGLY---HNPILNFKL 85
           LP +  +   + RF+    ++  +LID+S+SVD +LQIHA++LR  L      P+LN KL
Sbjct: 11  LPQNQLSTTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKL 70

Query: 86  QRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQCRLFDRALGYYSQMLTRGVEPNV 145
            R+YA+ G++ +S+A+F+   +P +F F+A I++     L D+A   Y Q+L+  + PN 
Sbjct: 71  HRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNE 130

Query: 146 FTFSSVLKSCLLEPGKALHCQAIKLGFDAD 173
           FTFSS+LKSC  + GK +H   +K G   D
Sbjct: 131 FTFSSLLKSCSTKSGKLIHTHVLKFGLGID 160

BLAST of HG10016696 vs. ExPASy Swiss-Prot
Match: Q9FG16 (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.8e-30
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 0

Query: 169 FDADLEEQKEQSLEVHSEKLAIAFGLISTKPGTAIKIVKNLRVCSDCHAVMKLISEITGR 228
           FD D EE+KE S+ +HSEKLAIA+G++ TKPGT I+IVKNLRVC DCH V KLISE+ GR
Sbjct: 540 FDVD-EEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGR 599

Query: 229 KIVMRDRNRFHHFEDGLCSCGDYW 253
           ++++RDRNRFHHF +G+CSC DYW
Sbjct: 600 ELIVRDRNRFHHFRNGVCSCRDYW 622

BLAST of HG10016696 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.1e-30
Identity = 74/170 (43.53%), Postives = 102/170 (60.00%), Query Frame = 0

Query: 94  YSVAVFNTFDEPSVFSFSAIIHSHVQCRLFDRALGYYSQMLTRGVEPNVFTF---SSVLK 153
           Y V + N       +  +A +    + R   +A GY   ++  G  P+VFT    S    
Sbjct: 625 YHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGY--TLIEIGETPHVFTSGDQSHPQV 684

Query: 154 SCLLEPGKALHCQAIKLGFDADL--------EEQKEQSLEVHSEKLAIAFGLISTKPGTA 213
             + E  + L  +  + G+  +         EE++E  ++VHSE+LAIAFGLI+T+PGT 
Sbjct: 685 KEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTE 744

Query: 214 IKIVKNLRVCSDCHAVMKLISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 253
           I+I+KNLRVC DCH V KLIS+IT R IV+RD NRFHHF+DG+CSCGDYW
Sbjct: 745 IRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792

BLAST of HG10016696 vs. ExPASy Swiss-Prot
Match: Q9LW32 (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-29
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 0

Query: 142 VFTFSSVLKSCLLEPGKALHCQAIKLGFDADLEEQKEQSLEVHSEKLAIAFGLISTKPGT 201
           ++ F + L   LLE G   +  ++    D   EE+KE +L VHSEKLAIAFG+++T PG+
Sbjct: 552 IYEFLAELNRKLLEAGYVSNTSSVCHDVD---EEEKEMTLRVHSEKLAIAFGIMNTVPGS 611

Query: 202 AIKIVKNLRVCSDCHAVMKLISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 253
            + +VKNLRVCSDCH V+KLIS+I  R+ V+RD  RFHHF+DG CSCGDYW
Sbjct: 612 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659

BLAST of HG10016696 vs. ExPASy Swiss-Prot
Match: Q9SMZ2 (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H53 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-27
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 0

Query: 174 EEQKEQSLEVHSEKLAIAFGLISTKPGTAIKIVKNLRVCSDCHAVMKLISEITGRKIVMR 233
           EE+KE++L  HSEKLA+AFGL+ST P T I+++KNLRVC DCH  MK I+++  R+IV+R
Sbjct: 912 EEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLR 971

Query: 234 DRNRFHHFEDGLCSCGDYW 253
           D NRFH F+DG+CSCGDYW
Sbjct: 972 DANRFHRFKDGICSCGDYW 990

BLAST of HG10016696 vs. ExPASy TrEMBL
Match: A0A1S3B0U7 (pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484813 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 6.6e-73
Identity = 225/642 (35.05%), Postives = 230/642 (35.83%), Query Frame = 0

Query: 1   MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCL 60
           MSSSSFFTASPPSPP IFTTNRSSV PSSSSTA+TS RFQQVE  RF LLID+SKSV  L
Sbjct: 6   MSSSSFFTASPPSPPSIFTTNRSSVSPSSSSTAKTSGRFQQVE--RFALLIDKSKSVAHL 65

Query: 61  LQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQC 120
           LQIHASLLR GLYHNPILNFKLQRSYAALGRLD SV VFNTFDEP+VFSFSAIIHSHVQ 
Sbjct: 66  LQIHASLLRHGLYHNPILNFKLQRSYAALGRLDCSVVVFNTFDEPNVFSFSAIIHSHVQS 125

Query: 121 RLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL------- 180
           RLFDRA GYYSQML+RGVEPN FTFSSVLKSC LE GK LHCQAIKLG  +DL       
Sbjct: 126 RLFDRAFGYYSQMLSRGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLV 185

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 186 DVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDEARSLFEGMKERDVVCWNV 245

Query: 241 ------------------------------------------------------------ 253
                                                                       
Sbjct: 246 MIGGYAQNGVPNESLKLFRRMLVSKAIPNEVTVLAVLSACGQLGALESGRWVHSYIENKS 305

BLAST of HG10016696 vs. ExPASy TrEMBL
Match: A0A5D3CM09 (Pentatricopeptide repeat-containing protein ELI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004430 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 2.1e-71
Identity = 224/642 (34.89%), Postives = 228/642 (35.51%), Query Frame = 0

Query: 1   MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCL 60
           MSSSSFFTASPPSPP IFTTNR SV PSSSSTARTS RFQQVE  RF LLID+SKSV  L
Sbjct: 6   MSSSSFFTASPPSPPSIFTTNRFSVSPSSSSTARTSGRFQQVE--RFALLIDKSKSVAHL 65

Query: 61  LQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQC 120
           LQIHASLLR GLYHN ILNFKLQRSYAALGRLD SV VFNTFDEP+VFSFSAIIHSHVQ 
Sbjct: 66  LQIHASLLRHGLYHNLILNFKLQRSYAALGRLDCSVVVFNTFDEPNVFSFSAIIHSHVQS 125

Query: 121 RLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL------- 180
           RLFDRA GYYSQML+RGVEPN FTFSSVLKSC LE GK LHCQAIKLG  +DL       
Sbjct: 126 RLFDRAFGYYSQMLSRGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLV 185

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 186 DVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDEARSLFEGMKERDVVCWNV 245

Query: 241 ------------------------------------------------------------ 253
                                                                       
Sbjct: 246 MIGGYAQNGVPNESLKLFRRMLVSKAIPNEVTVLAVLSACGQLGALESGRWVHSYIENKS 305

BLAST of HG10016696 vs. ExPASy TrEMBL
Match: A0A0A0KGF1 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G492280 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.6e-71
Identity = 222/642 (34.58%), Postives = 229/642 (35.67%), Query Frame = 0

Query: 1   MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCL 60
           MSSSS FTAS PSPP IFTTNRSSVLPSSSSTARTSDRFQ+VE  RF  LID+SKSV  L
Sbjct: 6   MSSSSIFTASHPSPPSIFTTNRSSVLPSSSSTARTSDRFQEVE--RFASLIDKSKSVAHL 65

Query: 61  LQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQC 120
           LQIHASLLR GLYHNPILNFKLQRSYAALGRLD SV VFNTFDEP+VFSFSAIIHSHVQ 
Sbjct: 66  LQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQS 125

Query: 121 RLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL------- 180
           RLFDRA GYYSQML+ GVEPN FTFSSVLKSC LE GK LHCQAIKLG  +DL       
Sbjct: 126 RLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLV 185

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 186 DVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNV 245

Query: 241 ------------------------------------------------------------ 253
                                                                       
Sbjct: 246 MIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKG 305

BLAST of HG10016696 vs. ExPASy TrEMBL
Match: A0A6J1BWF5 (pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005343 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.6e-71
Identity = 217/642 (33.80%), Postives = 233/642 (36.29%), Query Frame = 0

Query: 1   MSSSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCL 60
           MSSSSFFTA PPSPPP+ TTNRSS+LPSS STA TSDR QQVE  RF  LID+S+SV  L
Sbjct: 1   MSSSSFFTAPPPSPPPLVTTNRSSLLPSSPSTATTSDRSQQVE--RFASLIDKSRSVIRL 60

Query: 61  LQIHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQC 120
           LQIHASLLR GLYH+PILNFKLQRSYA +GRLDYSVAVFNT D+P+VFS+S+IIHSH QC
Sbjct: 61  LQIHASLLRQGLYHHPILNFKLQRSYATVGRLDYSVAVFNTSDDPNVFSYSSIIHSHAQC 120

Query: 121 RLFDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL------- 180
            LFD+AL +YSQMLTRGVEPNVFTFSSVLKSC LEPGKALHCQAIKLGFD+DL       
Sbjct: 121 GLFDQALDFYSQMLTRGVEPNVFTFSSVLKSCSLEPGKALHCQAIKLGFDSDLYVRTGLV 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 DVYARGGEVVCARQLFDKMPERSLVSLTAMLTCYTKLGELDEARALFDGMKERDVVCWNV 240

Query: 241 ------------------------------------------------------------ 253
                                                                       
Sbjct: 241 MIGGYAQNGVPNESLKLFRRMLVAKVKPNEVTVLAVLSACGQLGALESGRWVHSYIENKG 300

BLAST of HG10016696 vs. ExPASy TrEMBL
Match: A0A6J1GED1 (pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111453386 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.2e-69
Identity = 145/171 (84.80%), Postives = 151/171 (88.30%), Query Frame = 0

Query: 3   SSSFFTASPPSPPPIFTTNRSSVLPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCLLQ 62
           +SSF TASP SPPPIFTTN SSVL SS STARTSDRFQQVE   F +LID+SKSVD LLQ
Sbjct: 2   TSSFLTASPASPPPIFTTNCSSVLRSSCSTARTSDRFQQVE--SFAMLIDKSKSVDRLLQ 61

Query: 63  IHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQCRL 122
           IHAS+LR GLYHNPILNFKLQRSYAALGRLDYSVAVFNT DEP+VFSFSAIIHSHVQC L
Sbjct: 62  IHASVLRHGLYHNPILNFKLQRSYAALGRLDYSVAVFNTSDEPNVFSFSAIIHSHVQCGL 121

Query: 123 FDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADL 174
           FDRAL YY QML  GVEPNVFTFSSVLKSC LE GK LHCQAIKLGFD+DL
Sbjct: 122 FDRALDYYLQMLNGGVEPNVFTFSSVLKSCSLELGKVLHCQAIKLGFDSDL 170

BLAST of HG10016696 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 146.0 bits (367), Expect = 4.2e-35
Identity = 85/191 (44.50%), Postives = 110/191 (57.59%), Query Frame = 0

Query: 63  IHASLLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQCRL 122
           I  ++  SG+Y        L   YA++G  +    V N   E  +     I    ++ ++
Sbjct: 456 IGLNIKNSGIY------VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKV 515

Query: 123 FDRALGYYSQMLTRGVEPNVFTFSSVLKSCLLEPGKALHCQAIKLGFDADLEE-QKEQSL 182
            +   G      ++ +   +   S  +KS    P      Q        DLEE +KEQSL
Sbjct: 516 HEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQ--------DLEETEKEQSL 575

Query: 183 EVHSEKLAIAFGLISTKPGTAIKIVKNLRVCSDCHAVMKLISEITGRKIVMRDRNRFHHF 242
           +VHSE+LAIA+GLISTKPG+ +KI KNLRVCSDCH V KLIS+ITGRKIVMRDRNRFHHF
Sbjct: 576 QVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHF 632

Query: 243 EDGLCSCGDYW 253
            DG CSCGD+W
Sbjct: 636 TDGSCSCGDFW 632


HSP 2 Score: 109.4 bits (272), Expect = 4.3e-24
Identity = 59/150 (39.33%), Postives = 93/150 (62.00%), Query Frame = 0

Query: 26  LPSSSSTARTSDRFQQVELQRFTLLIDRSKSVDCLLQIHASLLRSGLY---HNPILNFKL 85
           LP +  +   + RF+    ++  +LID+S+SVD +LQIHA++LR  L      P+LN KL
Sbjct: 11  LPQNQLSTTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKL 70

Query: 86  QRSYAALGRLDYSVAVFNTFDEPSVFSFSAIIHSHVQCRLFDRALGYYSQMLTRGVEPNV 145
            R+YA+ G++ +S+A+F+   +P +F F+A I++     L D+A   Y Q+L+  + PN 
Sbjct: 71  HRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNE 130

Query: 146 FTFSSVLKSCLLEPGKALHCQAIKLGFDAD 173
           FTFSS+LKSC  + GK +H   +K G   D
Sbjct: 131 FTFSSLLKSCSTKSGKLIHTHVLKFGLGID 160

BLAST of HG10016696 vs. TAIR 10
Match: AT5G06540.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-31
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 0

Query: 169 FDADLEEQKEQSLEVHSEKLAIAFGLISTKPGTAIKIVKNLRVCSDCHAVMKLISEITGR 228
           FD D EE+KE S+ +HSEKLAIA+G++ TKPGT I+IVKNLRVC DCH V KLISE+ GR
Sbjct: 540 FDVD-EEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGR 599

Query: 229 KIVMRDRNRFHHFEDGLCSCGDYW 253
           ++++RDRNRFHHF +G+CSC DYW
Sbjct: 600 ELIVRDRNRFHHFRNGVCSCRDYW 622


HSP 2 Score: 43.1 bits (100), Expect = 3.8e-04
Identity = 45/171 (26.32%), Postives = 72/171 (42.11%), Query Frame = 0

Query: 67  LLRSGLYHNPILNFKLQRSYAALGRLDYSVAVFNTFDEPSVFSFSAII-----HSHVQCR 126
           +++S +  N IL   L   +   G ++ ++ VF    E    S+S+II     H H    
Sbjct: 275 VVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAH-- 334

Query: 127 LFDRALGYYSQMLTRGVEPNVFTFSSVLKSC----LLEPGKALH---------------- 186
              +A+ Y+SQM++ G  P   TF++VL +C    L+E G  ++                
Sbjct: 335 ---KAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHY 394

Query: 187 -CQAIKLGFDADLEEQKEQSLEVHSEKLAIAFGLISTKPGTAIKIVKNLRV 212
            C    LG    L E +   L++H +  A   G +      A KI KN  V
Sbjct: 395 GCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALL----GACKIYKNTEV 436

BLAST of HG10016696 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 3.6e-31
Identity = 74/170 (43.53%), Postives = 102/170 (60.00%), Query Frame = 0

Query: 94  YSVAVFNTFDEPSVFSFSAIIHSHVQCRLFDRALGYYSQMLTRGVEPNVFTF---SSVLK 153
           Y V + N       +  +A +    + R   +A GY   ++  G  P+VFT    S    
Sbjct: 625 YHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGY--TLIEIGETPHVFTSGDQSHPQV 684

Query: 154 SCLLEPGKALHCQAIKLGFDADL--------EEQKEQSLEVHSEKLAIAFGLISTKPGTA 213
             + E  + L  +  + G+  +         EE++E  ++VHSE+LAIAFGLI+T+PGT 
Sbjct: 685 KEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTE 744

Query: 214 IKIVKNLRVCSDCHAVMKLISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 253
           I+I+KNLRVC DCH V KLIS+IT R IV+RD NRFHHF+DG+CSCGDYW
Sbjct: 745 IRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792

BLAST of HG10016696 vs. TAIR 10
Match: AT3G26782.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 3.1e-30
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 0

Query: 142 VFTFSSVLKSCLLEPGKALHCQAIKLGFDADLEEQKEQSLEVHSEKLAIAFGLISTKPGT 201
           ++ F + L   LLE G   +  ++    D   EE+KE +L VHSEKLAIAFG+++T PG+
Sbjct: 552 IYEFLAELNRKLLEAGYVSNTSSVCHDVD---EEEKEMTLRVHSEKLAIAFGIMNTVPGS 611

Query: 202 AIKIVKNLRVCSDCHAVMKLISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 253
            + +VKNLRVCSDCH V+KLIS+I  R+ V+RD  RFHHF+DG CSCGDYW
Sbjct: 612 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659

BLAST of HG10016696 vs. TAIR 10
Match: AT4G33170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-28
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 0

Query: 174 EEQKEQSLEVHSEKLAIAFGLISTKPGTAIKIVKNLRVCSDCHAVMKLISEITGRKIVMR 233
           EE+KE++L  HSEKLA+AFGL+ST P T I+++KNLRVC DCH  MK I+++  R+IV+R
Sbjct: 912 EEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLR 971

Query: 234 DRNRFHHFEDGLCSCGDYW 253
           D NRFH F+DG+CSCGDYW
Sbjct: 972 DANRFHRFKDGICSCGDYW 990

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882525.14.6e-7689.02pentatricopeptide repeat-containing protein ELI1, chloroplastic [Benincasa hispi... [more]
XP_038882525.16.7e-3594.94pentatricopeptide repeat-containing protein ELI1, chloroplastic [Benincasa hispi... [more]
TYK12851.14.4e-7134.89pentatricopeptide repeat-containing protein ELI1 [Cucumis melo var. makuwa][more]
XP_022132503.17.5e-7133.80pentatricopeptide repeat-containing protein ELI1, chloroplastic [Momordica chara... [more]
XP_004141894.17.5e-7134.58pentatricopeptide repeat-containing protein ELI1, chloroplastic [Cucumis sativus... [more]
Match NameE-valueIdentityDescription
Q9SZT85.9e-3444.50Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
Q9FG161.8e-3069.05Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX... [more]
Q9SUH65.1e-3043.53Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
Q9LW324.3e-2954.95Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidop... [more]
Q9SMZ24.1e-2764.56Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A1S3B0U76.6e-7335.05pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Cucumis melo ... [more]
A0A5D3CM092.1e-7134.89Pentatricopeptide repeat-containing protein ELI1 OS=Cucumis melo var. makuwa OX=... [more]
A0A0A0KGF13.6e-7134.58DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4922... [more]
A0A6J1BWF53.6e-7133.80pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Momordica cha... [more]
A0A6J1GED11.2e-6984.80pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Cucurbita mos... [more]

Pages

Match NameE-valueIdentityDescription
AT4G37380.14.2e-3544.50Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G06540.11.3e-3169.05Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G30700.13.6e-3143.53Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G26782.13.1e-3054.95Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G33170.12.9e-2864.56Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 109..142
e-value: 1.4E-6
score: 26.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 105..152
e-value: 4.5E-10
score: 39.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 106..140
score: 10.270796
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 28..173
e-value: 3.6E-14
score: 54.5
IPR032867DYW domainPFAMPF14432DYW_deaminasecoord: 166..242
e-value: 6.0E-25
score: 87.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 174..238
coord: 32..169
NoneNo IPR availablePANTHERPTHR47926:SF226PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ELI1, CHLOROPLASTICcoord: 174..238
coord: 32..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10016696.1HG10016696.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding