HG10016685 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016685
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 7067004 .. 7067177 (-)
RNA-Seq Expression	HG10016685
Synteny	HG10016685

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTATCAGAAGTAGCTTCTCATTTATATCGGGAACTGTTTTCGGGATTTACGTGGCTCAAAATTACAACGTTCCCAACATCAGGAAACTCGCAAATACTGGGCTTGTGATGGCCAAGCACATCGAAGAGAATTACAGGAAGCCAAAGAAGAGGGAGGATGATGATTGA

mRNA sequence

ATGGGCTTTATCAGAAGTAGCTTCTCATTTATATCGGGAACTGTTTTCGGGATTTACGTGGCTCAAAATTACAACGTTCCCAACATCAGGAAACTCGCAAATACTGGGCTTGTGATGGCCAAGCACATCGAAGAGAATTACAGGAAGCCAAAGAAGAGGGAGGATGATGATTGA

Coding sequence (CDS)

ATGGGCTTTATCAGAAGTAGCTTCTCATTTATATCGGGAACTGTTTTCGGGATTTACGTGGCTCAAAATTACAACGTTCCCAACATCAGGAAACTCGCAAATACTGGGCTTGTGATGGCCAAGCACATCGAAGAGAATTACAGGAAGCCAAAGAAGAGGGAGGATGATGATTGA

Protein sequence

MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD

Homology

[Close]

BLAST of HG10016685 vs. NCBI nr
Match: XP_038882750.1 (uncharacterized protein LOC120073907 [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 5.6e-22
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
          MGFIRSSFSFI+GTVFGIY+AQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD
Sbjct: 1  MGFIRSSFSFITGTVFGIYLAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of HG10016685 vs. NCBI nr
Match: XP_038882745.1 (uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882746.1 uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882747.1 uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882749.1 uncharacterized protein LOC120073906 [Benincasa hispida])

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
          MGFIRSSFSFI+GTV GIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD
Sbjct: 1  MGFIRSSFSFIAGTVIGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of HG10016685 vs. NCBI nr
Match: XP_008440344.1 (PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo] >TYK12839.1 uncharacterized protein E5676_scaffold255G004310 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
          MGFIRSSFSFI+G+VFGIYVAQNYNVPNIRKLANTGL MAKHIEENYRKPKKR+DDD
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of HG10016685 vs. NCBI nr
Match: XP_022132505.1 (uncharacterized protein LOC111005345 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
          MGFIRSSFSFI+GTV GIYVAQNYNVPNIRKLANTGLV+AKHIEENYRKPKKR+DDD
Sbjct: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of HG10016685 vs. NCBI nr
Match: KAG6594998.1 (hypothetical protein SDJN03_11551, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
           MGFIRSSFSFI GTVFGIYVAQNY+VPNIRKLANTG++MAKHIEENYRKPKKREDDD
Sbjct: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 107

[Close]

BLAST of HG10016685 vs. ExPASy TrEMBL
Match: A0A5D3CR66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004310 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
          MGFIRSSFSFI+G+VFGIYVAQNYNVPNIRKLANTGL MAKHIEENYRKPKKR+DDD
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of HG10016685 vs. ExPASy TrEMBL
Match: A0A1S3B1N0 (uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
          MGFIRSSFSFI+G+VFGIYVAQNYNVPNIRKLANTGL MAKHIEENYRKPKKR+DDD
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of HG10016685 vs. ExPASy TrEMBL
Match: A0A6J1KVJ8 (uncharacterized protein LOC111496825 OS=Cucurbita maxima OX=3661 GN=LOC111496825 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
          MGFIRSSFSFI GTVFGIYVAQNY+VPNIRKLANTG++MAKHIEENYRKPKKREDDD
Sbjct: 1  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of HG10016685 vs. ExPASy TrEMBL
Match: A0A6J1HHR2 (uncharacterized protein LOC111463630 OS=Cucurbita moschata OX=3662 GN=LOC111463630 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
          MGFIRSSFSFI GTVFGIYVAQNY+VPNIRKLANTG++MAKHIEENYRKPKKREDDD
Sbjct: 1  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of HG10016685 vs. ExPASy TrEMBL
Match: A0A6J1BSM8 (uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005345 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 58
          MGFIRSSFSFI+GTV GIYVAQNYNVPNIRKLANTGLV+AKHIEENYRKPKKR+DDD
Sbjct: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of HG10016685 vs. TAIR 10
Match: AT2G35736.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-20
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKK 53
          MG  RS FSFI+G+VFG+Y+AQNYNVPNIRKL NTGLV+AKH+EENYRKPKK
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]

BLAST of HG10016685 vs. TAIR 10
Match: AT2G35736.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1). )

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-20
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKK 53
          MG  RS FSFI+G+VFG+Y+AQNYNVPNIRKL NTGLV+AKH+EENYRKPKK
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]

BLAST of HG10016685 vs. TAIR 10
Match: AT4G25225.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35736.2); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 4.9e-16
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MGFIRSSFSFISGTVFGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRED 56
          MG IRSSFSFI GTV GIY+AQ YNVPNI+KL +  + MAK +EE YRKPK R+D
Sbjct: 1  MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKPKSRDD 55

The following BLAST results are available for this feature:

BLAST of HG10016685 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882750.1	5.6e-22	96.49	uncharacterized protein LOC120073907 [Benincasa hispida]	[more]
XP_038882745.1	1.2e-21	96.49	uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882746.1 unchara...	[more]
XP_008440344.1	4.7e-21	92.98	PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo] >TYK12839.1 uncha...	[more]
XP_022132505.1	8.0e-21	92.98	uncharacterized protein LOC111005345 [Momordica charantia]	[more]
KAG6594998.1	8.0e-21	92.98	hypothetical protein SDJN03_11551, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10016685 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10016685 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CR66	2.3e-21	92.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B1N0	2.3e-21	92.98	uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=...	[more]
A0A6J1KVJ8	3.9e-21	92.98	uncharacterized protein LOC111496825 OS=Cucurbita maxima OX=3661 GN=LOC111496825...	[more]
A0A6J1HHR2	3.9e-21	92.98	uncharacterized protein LOC111463630 OS=Cucurbita moschata OX=3662 GN=LOC1114636...	[more]
A0A6J1BSM8	3.9e-21	92.98	uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of HG10016685 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35736.1	7.2e-20	80.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35736.2	7.2e-20	80.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G25225.1	4.9e-16	69.09	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027854	Short transmembrane mitochondrial protein 1	PFAM	PF15054	DUF4535	coord: 6..50 e-value: 2.6E-24 score: 84.7
None	No IPR available	PANTHER	PTHR33528	OS07G0239500 PROTEIN	coord: 1..57
None	No IPR available	PANTHER	PTHR33528:SF14	OS07G0239500 PROTEIN	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016685.1	HG10016685.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane