HG10016674 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016674
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ribonuclease III domain-containing protein RNC1, chloroplastic
Location	Chr03: 6989985 .. 6993443 (+)
RNA-Seq Expression	HG10016674
Synteny	HG10016674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTTCTCCTAATTACTCTTTCTCGTCTTCTTTAACCCCATTTATTGTTAAAATTCACCTCAATCATGCCATTTTCCCGAACCCCTCGTCCTCGAATTTGCGTATTTTTGCAGTTGCAATTGACCCACAACAAGAACTGCCCAAAAACAACCCTCAGAGACTGCTCAAGGAGCTTGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCATTAGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTCAAATCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCCCTTGAGCCCTCTGATAGTTATGGAGACGACAATCCTGCAAAACAATTTGACACTTTGTTGTACCTGGCCTTTCAGCATCCCTCATGCGAAAGAACAAAAGCCCGGCACATAAGATCGGGGCATTCGAGGCTATTGTTTTTGGGCCAATATGTAATCGAATTGGCCTTAGCGGAGTATTTTCTGCAGAGGTATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAGGTGGATCAAAGCTGCCAGTTTGCAGAATTTGATATTCCCATATGATGATATGGACAAGATGATTAGGAAGGACCGCGAACCACCTGTGAAGTAAGTTTGGTATTTCCTTTTCATTGGTTCTAATTCTTCTTTTTCCCATTGTAAAATAATGCTGTGAATGAGATATTTGTAAGAAATATTTTTTGAGTTAGTGATTGAAAAGTTATGCCATTTATGTGTTAAGCCCCGTGTTAAGTTTTACAAGAATCACAGCATGTGTTATCATCAGACTGAAAAGTACCAAATGCTTTAGGGAAGTTGATTGTGCAATATGATGGTAATGTAATGAATGGTTGACTAGGAACTAGGATCTATGGGCCAGAGACATTAAGAAGTTGGCATTTGATTAGGGTAAACGTTGAAGGCATAATTGCTGCTCCTGGTAATCTAAATCTTGGTAGCCTAGTTATGACCGTCGTAGACATTGAGCTTCATTATATAGATGGTCAACATTTCGTGAAGATGATGGTAACAAAGACCAGCTAAGAGACAATGTTAAGGAAGATGTGCCACTGGAAATGTGGCATAAAGCCTTGATTTAAGTTCTATGAGATTCCTATAGGTGGTTTGGTGCCACGGGGTGAATTCTTTGTGAACCTAGCACCACACATTCTTTCCTCAAATCTAGTACCTGAAGACTATGGACTCCACTCCATGAATCTGGCTTCCTCCAATTCGTCCATCCTTCACAAACTTGCTTCCAGGCCACTATGATTACTTTTTACCAACATGGCTTTCTGTTTGCTCCTTTTTGGCAAATGTAGCTTTTATACCCCTTGCACGCGTCAAATATTCAGTAAATATTTGGCCCTTGAGACTTGTATACTATTGCGGGAATTGGAAGATTGGATTTCTGTACCCACACTACTTATGTACTTCGTTTGCACAATTCATCTTAGTTTGCCTGATCTATCAAATTCACGTTTTTGTATGATGGAGCATGTACTAAAGGTTACATAGTGAAACGTGTGTTGTTTCAAAATTCATTTTACTTCTGATTAGCTTTTGGGATACCTAATATAACTTAGTTTTCTTTTTCCTTTCATTTTCAGTTACGTGTTAATTCTTGTTACCAATATGAAATATTCTTGGTAGCAGCAAAGGTTAGGAAGGAAATACTAGAGTTAAATCGTAGATGTGCTTTTACATCAAATCATGGTATTACTTTCTGTTGCATTTCTTAGTGAACTATCTTGCGCTTAATTGGTAAATTAGTAGCTTACACTTGGGAATAAAACTCCTGCCGATTCTCTTTCTAAAATAGTTTGACTCAATATATTATTTTAACAATGTGAGCCTAAAATTAATTTTCTTCGAGCAGATCTGTATTTTGGGCGTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTACCGGGTTCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGCGAACCAAGGTTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGAATTTGAGGACAAAAGGATCAGCTGGCAAGATATGGTTTCCTATAAGGTAAGTTTCATGCTTATTTTTAACAGCACAGTAAACTATTATGCTATTGTTTATCCTTCTTTAACAATGAAATCTACTCTTGTGATCGTGTTTTCCTTCTCTCATTTTTCAGCCACCAGAAGATGCTCTGTTTGCGCACCCTAGGCTCTTCAGAGCTTGTGTCCCACCTGGCATGCATCGTTTCCGGGGTAATATATGGGATTACGATAGCCGACCTCAAGTAATGCAAGCACTAGGATACCCTATACCTGTTACTGACAAAATTCCTGACATCACGGAAGCGAGAAATATTGAACTTGGACTTGGACTGCAGGTAGCACCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAATGCCCCAACATACACACATAATGACTTTTCTTCTCTCATCCATAACCATATGATGATCATAGTATTATTACATTCTCAATGTCGATTTTGATTGTCTTGTACATGTGGCTGTGTTTCTCAAGGTGATGGCTGATTATGAGCTTTGTTACATCTTACGTGTGAAGGAGGATATTTAAAGAATACATGTAGTCTAGAATTTCTGCTTGATGTTTGATATAGATCAATATAATGGTTTTAAGTAGCTTTGTAGGCTGTATTTAAATTCTGTGGAACAGCATGATCACGTTAATCTCAGTCAATTTCTTAATCAAATGCAGCTTTGTTTTTTGCATCCATCAAAACACAAGTTTGAACACCCTCGTTTCTGCTATGAACGATTAGAATACCTTGGCCAAAAGATCCAGGTAAGACCTTTCTTACATGTATTATGGAGGATATACACCTTTCTCTCTATCAAAATCCTGTCCTATATGTTTGGATCAAGAAACTTATGACGGTCGGTCTGATTGTATTCATTCAAGGATATCGTGATGGCTGAGAGACTGTTGATGAAGCATTTAGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGACGATTGCTCATGAACAAGTTTTGCGGGCGATATTTGAGAGAGAAATATCTTCATAAACTTATCATCTACTCCGAAAAAGTTCAAGATGCATATGAGAACAACCGGAGGCTTCGAAACCCGGCCACCACGGCTGTTCAGCAAGCTCTTCATGGACTTTCTTATGTAGTTTATGGGAAGCCTGATGTGAGACGTCTCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTATGA

mRNA sequence

ATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTTCTCCTAATTACTCTTTCTCGTCTTCTTTAACCCCATTTATTGTTAAAATTCACCTCAATCATGCCATTTTCCCGAACCCCTCGTCCTCGAATTTGCGTATTTTTGCAGTTGCAATTGACCCACAACAAGAACTGCCCAAAAACAACCCTCAGAGACTGCTCAAGGAGCTTGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCATTAGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTCAAATCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCCCTTGAGCCCTCTGATAGTTATGGAGACGACAATCCTGCAAAACAATTTGACACTTTGTTGTACCTGGCCTTTCAGCATCCCTCATGCGAAAGAACAAAAGCCCGGCACATAAGATCGGGGCATTCGAGGCTATTGTTTTTGGGCCAATATGTAATCGAATTGGCCTTAGCGGAGTATTTTCTGCAGAGGTATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAGGTGGATCAAAGCTGCCAGTTTGCAGAATTTGATATTCCCATATGATGATATGGACAAGATGATTAGGAAGGACCGCGAACCACCTGTGAAATCTGTATTTTGGGCGTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTACCGGGTTCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGCGAACCAAGGTTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGAATTTGAGGACAAAAGGATCAGCTGGCAAGATATGGTTTCCTATAAGCCACCAGAAGATGCTCTGTTTGCGCACCCTAGGCTCTTCAGAGCTTGTGTCCCACCTGGCATGCATCGTTTCCGGGGTAATATATGGGATTACGATAGCCGACCTCAAGTAATGCAAGCACTAGGATACCCTATACCTGTTACTGACAAAATTCCTGACATCACGGAAGCGAGAAATATTGAACTTGGACTTGGACTGCAGCTTTGTTTTTTGCATCCATCAAAACACAAGTTTGAACACCCTCGTTTCTGCTATGAACGATTAGAATACCTTGGCCAAAAGATCCAGGATATCGTGATGGCTGAGAGACTGTTGATGAAGCATTTAGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGACGATTGCTCATGAACAAGTTTTGCGGGCGATATTTGAGAGAGAAATATCTTCATAAACTTATCATCTACTCCGAAAAAGTTCAAGATGCATATGAGAACAACCGGAGGCTTCGAAACCCGGCCACCACGGCTGTTCAGCAAGCTCTTCATGGACTTTCTTATGTAGTTTATGGGAAGCCTGATGTGAGACGTCTCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTATGA

Coding sequence (CDS)

ATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTTCTCCTAATTACTCTTTCTCGTCTTCTTTAACCCCATTTATTGTTAAAATTCACCTCAATCATGCCATTTTCCCGAACCCCTCGTCCTCGAATTTGCGTATTTTTGCAGTTGCAATTGACCCACAACAAGAACTGCCCAAAAACAACCCTCAGAGACTGCTCAAGGAGCTTGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCATTAGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTCAAATCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCCCTTGAGCCCTCTGATAGTTATGGAGACGACAATCCTGCAAAACAATTTGACACTTTGTTGTACCTGGCCTTTCAGCATCCCTCATGCGAAAGAACAAAAGCCCGGCACATAAGATCGGGGCATTCGAGGCTATTGTTTTTGGGCCAATATGTAATCGAATTGGCCTTAGCGGAGTATTTTCTGCAGAGGTATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAGGTGGATCAAAGCTGCCAGTTTGCAGAATTTGATATTCCCATATGATGATATGGACAAGATGATTAGGAAGGACCGCGAACCACCTGTGAAATCTGTATTTTGGGCGTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTACCGGGTTCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGCGAACCAAGGTTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGAATTTGAGGACAAAAGGATCAGCTGGCAAGATATGGTTTCCTATAAGCCACCAGAAGATGCTCTGTTTGCGCACCCTAGGCTCTTCAGAGCTTGTGTCCCACCTGGCATGCATCGTTTCCGGGGTAATATATGGGATTACGATAGCCGACCTCAAGTAATGCAAGCACTAGGATACCCTATACCTGTTACTGACAAAATTCCTGACATCACGGAAGCGAGAAATATTGAACTTGGACTTGGACTGCAGCTTTGTTTTTTGCATCCATCAAAACACAAGTTTGAACACCCTCGTTTCTGCTATGAACGATTAGAATACCTTGGCCAAAAGATCCAGGATATCGTGATGGCTGAGAGACTGTTGATGAAGCATTTAGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGACGATTGCTCATGAACAAGTTTTGCGGGCGATATTTGAGAGAGAAATATCTTCATAAACTTATCATCTACTCCGAAAAAGTTCAAGATGCATATGAGAACAACCGGAGGCTTCGAAACCCGGCCACCACGGCTGTTCAGCAAGCTCTTCATGGACTTTCTTATGTAGTTTATGGGAAGCCTGATGTGAGACGTCTCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTATGA

Protein sequence

MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPKNNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV

Homology

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BLAST of HG10016674 vs. NCBI nr
Match: XP_038883471.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispida])

HSP 1 Score: 1086.6 bits (2809), Expect = 0.0e+00
Identity = 527/534 (98.69%), Postives = 532/534 (99.63%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPSPNYSFSSSLTPFIVKIH NH IFPNPSS+NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPP+RFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPKRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of HG10016674 vs. NCBI nr
Match: XP_008440359.1 (PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucumis melo])

HSP 1 Score: 1081.2 bits (2795), Expect = 0.0e+00
Identity = 524/534 (98.13%), Postives = 529/534 (99.06%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPSPNYSFSSSLTPFIVKIH NH IFPNPSS NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFL RYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRISWQDM+SYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of HG10016674 vs. NCBI nr
Match: XP_004141878.1 (ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucumis sativus] >KGN48593.1 hypothetical protein Csa_003755 [Cucumis sativus])

HSP 1 Score: 1066.2 bits (2756), Expect = 9.0e-308
Identity = 516/534 (96.63%), Postives = 528/534 (98.88%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPS NYSFSSSLTPFIVKIH NH IFPNPSS+NLR+FAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRI WQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 533

[Close]

BLAST of HG10016674 vs. NCBI nr
Match: XP_023543359.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1060.4 bits (2741), Expect = 5.0e-306
Identity = 511/534 (95.69%), Postives = 525/534 (98.31%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSS FVKLSSP+PN+SFSSSLTPF+VKIH N+    NPSS +LRIFAVA+DPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PVTDKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of HG10016674 vs. NCBI nr
Match: XP_022133289.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charantia])

HSP 1 Score: 1060.4 bits (2741), Expect = 5.0e-306
Identity = 511/534 (95.69%), Postives = 527/534 (98.69%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSSSFV+L+SP+PNYSFSSSLTPF  KI+ N+  FPNP+S NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKR+LP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of HG10016674 vs. ExPASy Swiss-Prot
Match: Q9SZV0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 903.3 bits (2333), Expect = 1.3e-261
Identity = 433/532 (81.39%), Postives = 479/532 (90.04%), Query Frame = 0


Query: 4   SSSFVKL-SSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPKNN 63
           SSS +++ SS +P  SFSSS++ F  K     +I       NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 184 RHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAASL 243
           RH+++GHSRL FLGQYV+ELAL E+FLQRYPRESPGPMRERVFALIGKR LP+WIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 244 QNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECE 303
           QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308

Query: 304 PRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 363
           PR RRQLEDVDYVSVEFE K++ WQD+ +YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368

Query: 364 DYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLE 423
           D+DS+P+VMQ LGYP+ + D+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLE
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLE 428

Query: 424 YLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQ 483
           Y+GQKIQDI MAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREK LH  IIYSE+V 
Sbjct: 429 YVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVH 488

Query: 484 DAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 489 DRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537

[Close]

BLAST of HG10016674 vs. ExPASy Swiss-Prot
Match: A6YSL1 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=4577 GN=RNC1 PE=1 SV=1)

HSP 1 Score: 828.6 bits (2139), Expect = 4.2e-239
Identity = 394/523 (75.33%), Postives = 452/523 (86.42%), Query Frame = 0


Query: 22  SLTPFIVKIHLNHAIFPNPSSSNLRIFAVAID------PQQELPKNNPQRLLKELAERKR 81
           +LTP    +H         SS  +R+ AVA D      P  E P N+P RLL+ELA+RK+
Sbjct: 12  TLTPLPFSLH--------SSSRRVRVLAVAADQTPPPAPPSE-PANSPSRLLRELAQRKK 71

Query: 82  ATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMD 141
           A SPKKK PPRRFIL+PPLDD++L  RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMD
Sbjct: 72  AVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMD 131

Query: 142 EYLLEAKQALGYPLEPSDSY--GDDNPAKQFDTLLYLAFQH--PSCERTKARHIRSGHSR 201
           EYLLEAKQALGYPL PS++   GDD PA+ FD L YLAFQH  PS ERT+ RH+R+GHSR
Sbjct: 132 EYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLFYLAFQHLDPSSERTRMRHVRNGHSR 191

Query: 202 LLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAASLQNLIFPYDD 261
           L FLGQYV+ELA  E+FLQRYPRESPGPMRERVFALIGK+ LPRW+KAASL NL+FPYDD
Sbjct: 192 LWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRWLKAASLHNLVFPYDD 251

Query: 262 MDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECEPRLRRQLED 321
           +DKMIRKDREPP K+VFWA+FGAIYLCFGMPEVYRVLFE FGMDPD E C+P+LRRQLED
Sbjct: 252 LDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQLED 311

Query: 322 VDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVM 381
           VDYVSVEFE ++++WQD+ +Y+PP DALFAHPRLFRACVPPGMHRFRGNIWD+DSRP+VM
Sbjct: 312 VDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDSRPKVM 371

Query: 382 QALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQDI 441
             LGYP+P+ D+IP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY+GQKIQD+
Sbjct: 372 TTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDL 431

Query: 442 VMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRL 501
           VMAERLLMKHLDAPG+WL EKHRR LMNK+CGRYLR+K+L   IIY E VQD +E+NRRL
Sbjct: 432 VMAERLLMKHLDAPGRWLAEKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRL 491

Query: 502 RNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           RNP+TT+VQQALHGL+Y VYGKPDVRRLMFEVFDFEQ+QPKAV
Sbjct: 492 RNPSTTSVQQALHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV 525

[Close]

BLAST of HG10016674 vs. ExPASy Swiss-Prot
Match: Q8S1Z0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 827.4 bits (2136), Expect = 9.3e-239
Identity = 383/482 (79.46%), Postives = 438/482 (90.87%), Query Frame = 0


Query: 59  PKNNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLS 118
           P N+P RLL+ELAERK+A SPKKK PPRRFIL+PPLDD++L +RFL+SPQL+LK+ PLLS
Sbjct: 52  PANSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLSSPQLSLKALPLLS 111

Query: 119 SCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDN----PAKQFDTLLYLAFQH 178
           SCLPS+ L+ AD+TWMDEYLLEAKQALGYPL PS++ GD +    PA+ FD LLYLAFQH
Sbjct: 112 SCLPSAPLSAADRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPARHFDVLLYLAFQH 171

Query: 179 --PSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRN 238
              SCERT+ RH+RSGHSRL FLGQYV+ELA  E+FLQRYPRESPGPMRERVFALIGKR 
Sbjct: 172 LDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRA 231

Query: 239 LPRWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVF 298
           +P+WIKAASL NL+FPYDD+DKMIRKDREPP K+VFWALFGAIYLCFGMPEVYRVLFE F
Sbjct: 232 IPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEVYRVLFEAF 291

Query: 299 GMDPDAEECEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPP 358
           GMDP+ E C+P+LRRQLEDVDYVSVEFE ++++WQD+ +Y+PP DALFAHPRLFRACVPP
Sbjct: 292 GMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPP 351

Query: 359 GMHRFRGNIWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFE 418
           GMHRFRGNIWD+D+RP+VM  LGYP+P+ D+IP+ITEARNIELGLGLQLCFLHPSKHKFE
Sbjct: 352 GMHRFRGNIWDFDNRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFE 411

Query: 419 HPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLH 478
           HPRFC ERLEY+GQKIQD+VMAERLLMKHLDAPG+WL EKHRRLLMNK+CGRYLR+K+LH
Sbjct: 412 HPRFCLERLEYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRLLMNKYCGRYLRDKHLH 471

Query: 479 KLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPK 535
             IIY E VQD +E+NRRLRNP+TTAVQQA+HGL+Y VYGKPDVRRLMFEVFDFEQ+QPK
Sbjct: 472 HYIIYGESVQDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFEVFDFEQVQPK 531

[Close]

BLAST of HG10016674 vs. ExPASy Swiss-Prot
Match: Q5L0Q3 (Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-09
Identity = 38/124 (30.65%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 165 DTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERV 224
           + LL  AF H S      R +   + RL FLG  V+EL +++Y  Q++P  S G + +  
Sbjct: 32  EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91

Query: 225 FALIGKRNLPRWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEV 284
            A++ + +L ++  A S   L+      +    + R   +  VF A  GA+YL  GM  V
Sbjct: 92  AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151

Query: 285 YRVL 289
            R L
Sbjct: 152 IRFL 155

[Close]

BLAST of HG10016674 vs. ExPASy Swiss-Prot
Match: A4IM67 (Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=rnc PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-09
Identity = 39/126 (30.95%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 163 QFDTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRE 222
           Q + LL  AF H S      R     + RL FLG  V+EL +++Y  Q++P  S G + +
Sbjct: 30  QNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTK 89

Query: 223 RVFALIGKRNLPRWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMP 282
              A++ + +L ++  A S   L+      +    + R   +  VF A  GA+YL  GM 
Sbjct: 90  LRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMD 149

Query: 283 EVYRVL 289
            V R L
Sbjct: 150 VVLRFL 155

[Close]

BLAST of HG10016674 vs. ExPASy TrEMBL
Match: A0A1S3B1J9 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484834 PE=4 SV=1)

HSP 1 Score: 1081.2 bits (2795), Expect = 0.0e+00
Identity = 524/534 (98.13%), Postives = 529/534 (99.06%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPSPNYSFSSSLTPFIVKIH NH IFPNPSS NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFL RYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRISWQDM+SYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of HG10016674 vs. ExPASy TrEMBL
Match: A0A0A0KGG7 (RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 PE=4 SV=1)

HSP 1 Score: 1066.2 bits (2756), Expect = 4.4e-308
Identity = 516/534 (96.63%), Postives = 528/534 (98.88%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPS NYSFSSSLTPFIVKIH NH IFPNPSS+NLR+FAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKRI WQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 533

[Close]

BLAST of HG10016674 vs. ExPASy TrEMBL
Match: A0A6J1BVK6 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005910 PE=4 SV=1)

HSP 1 Score: 1060.4 bits (2741), Expect = 2.4e-306
Identity = 511/534 (95.69%), Postives = 527/534 (98.69%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSSSFV+L+SP+PNYSFSSSLTPF  KI+ N+  FPNP+S NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKR+LP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of HG10016674 vs. ExPASy TrEMBL
Match: A0A6J1GEC3 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453180 PE=4 SV=1)

HSP 1 Score: 1060.1 bits (2740), Expect = 3.1e-306
Identity = 511/534 (95.69%), Postives = 524/534 (98.13%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSS FVKLSSP+PN+SFSSSLTPF+VKIH N+    NPSS  LRIFAVA+DPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PVTDKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of HG10016674 vs. ExPASy TrEMBL
Match: A0A6J1IRK8 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477828 PE=4 SV=1)

HSP 1 Score: 1053.9 bits (2724), Expect = 2.2e-304
Identity = 507/534 (94.94%), Postives = 524/534 (98.13%), Query Frame = 0


Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPK 60
           MELSS FVKLSSP+PN+SFSSSLTPF+VKIH N+    NPSS +LRIFAVA+DP+QELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPRQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWM+EYLLEAKQALGYPLEP DSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMEEYLLEAKQALGYPLEPFDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYP+PVTDKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           VQDAYENNRRLRNPATTAVQQ+LHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 481 VQDAYENNRRLRNPATTAVQQSLHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of HG10016674 vs. TAIR 10
Match: AT4G37510.1 (Ribonuclease III family protein )

HSP 1 Score: 903.3 bits (2333), Expect = 9.4e-263
Identity = 433/532 (81.39%), Postives = 479/532 (90.04%), Query Frame = 0


Query: 4   SSSFVKL-SSPSPNYSFSSSLTPFIVKIHLNHAIFPNPSSSNLRIFAVAIDPQQELPKNN 63
           SSS +++ SS +P  SFSSS++ F  K     +I       NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 184 RHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPRWIKAASL 243
           RH+++GHSRL FLGQYV+ELAL E+FLQRYPRESPGPMRERVFALIGKR LP+WIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 244 QNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECE 303
           QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308

Query: 304 PRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 363
           PR RRQLEDVDYVSVEFE K++ WQD+ +YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368

Query: 364 DYDSRPQVMQALGYPIPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLE 423
           D+DS+P+VMQ LGYP+ + D+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLE
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLE 428

Query: 424 YLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQ 483
           Y+GQKIQDI MAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREK LH  IIYSE+V 
Sbjct: 429 YVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVH 488

Query: 484 DAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 489 DRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537

[Close]

BLAST of HG10016674 vs. TAIR 10
Match: AT2G48121.2 (LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )

HSP 1 Score: 141.0 bits (354), Expect = 2.8e-33
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 458 MNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVR 517
           MNKFCGRYLREK LH  IIYSE+V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVR
Sbjct: 1   MNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVR 60

Query: 518 RLMFEVFDFEQIQPKAV 535
           RLMFEVFDFEQIQPKAV
Sbjct: 61  RLMFEVFDFEQIQPKAV 77

[Close]

BLAST of HG10016674 vs. TAIR 10
Match: AT2G48121.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-22
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 478 SEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 535
           +E+V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 19  TEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 75

The following BLAST results are available for this feature:

BLAST of HG10016674 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883471.1	0.0e+00	98.69	ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispid...	[more]
XP_008440359.1	0.0e+00	98.13	PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucum...	[more]
XP_004141878.1	9.0e-308	96.63	ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucum...	[more]
XP_023543359.1	5.0e-306	95.69	ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita p...	[more]
XP_022133289.1	5.0e-306	95.69	ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charan...	[more]

BLAST of HG10016674 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZV0	1.3e-261	81.39	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th...	[more]
A6YSL1	4.2e-239	75.33	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=45...	[more]
Q8S1Z0	9.3e-239	79.46	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s...	[more]
Q5L0Q3	3.6e-09	30.65	Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3...	[more]
A4IM67	4.7e-09	30.95	Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=r...	[more]

BLAST of HG10016674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B1J9	0.0e+00	98.13	ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo O...	[more]
A0A0A0KGG7	4.4e-308	96.63	RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 P...	[more]
A0A6J1BVK6	2.4e-306	95.69	ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica char...	[more]
A0A6J1GEC3	3.1e-306	95.69	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]
A0A6J1IRK8	2.2e-304	94.94	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]

BLAST of HG10016674 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37510.1	9.4e-263	81.39	Ribonuclease III family protein	[more]
AT2G48121.2	2.8e-33	85.71	LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonucle...	[more]
AT2G48121.1	1.7e-22	84.21	BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAI...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000999	Ribonuclease III domain	SMART	SM00535	riboneu5	coord: 166..303 e-value: 3.0E-26 score: 103.2
IPR000999	Ribonuclease III domain	PROSITE	PS50142	RNASE_3_2	coord: 167..280 score: 15.142906
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 166..297 e-value: 6.56412E-29 score: 109.239
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 399..524 e-value: 2.60942E-20 score: 84.9718
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	1.10.1520.10	Ribonuclease III domain	coord: 163..294 e-value: 1.1E-14 score: 56.2 coord: 391..527 e-value: 1.1E-11 score: 46.5
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 132..293
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 399..525
None	No IPR available	PANTHER	PTHR11207:SF21	RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTIC	coord: 1..531
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 1..531

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016674.1	HG10016674.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006396	RNA processing
biological_process	GO:0016075	rRNA catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding