HG10016620 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016620
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Epidermal patterning factor-like protein
Location	Chr03: 6490402 .. 6491014 (-)
RNA-Seq Expression	HG10016620
Synteny	HG10016620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGTGAGTGTAGTAGCAACAATGGCGTCATTGGCTCGCGCAGCAGAATCTTGTGTTCGACTGTTTCTCTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTTATGGCTGAAGGTAACTGGGTATCTTTTGAAATTTCAAAAGAGAGTTCAAAACTAGATTTTTATTCTTCAACTTCAATTTCAGTTAAACCGAAAATCGTTTTTCTTTGCAGGCAGATTGATTTCAGGGAGTGGCAAGGTCAGTCCAGAAACTAGCTCTTTCCTTCCTTTCTCAAATACTTCACATTTTCTATGAAAGCTTAATTAATTGAGAAGAATAATTTTGGTTTTTTTTTTTGGTTTTGGTGCATTGGGATAGACAGTGAATAATGAAGATAAAATGGTATTGAGAGGACAAATTGGGTCAAGACCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGGACATTGTGAGGCCATCCAAGTTCCAGCAAATCCACAAAAATCAGCAACTAAAAACTCTTCAACAATGAACAACATAGCTTATGCTAGAGATGAAGCCTCCAATTACAAACCCATGAGCTGGAAATGCAAATGTGGAAGCTTAATCTTCAATCCTTAA

mRNA sequence

ATGGTGTGTGAGTGTAGTAGCAACAATGGCGTCATTGGCTCGCGCAGCAGAATCTTGTGTTCGACTGTTTCTCTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTTATGGCTGAAGGCAGATTGATTTCAGGGAGTGGCAAGACAGTGAATAATGAAGATAAAATGGTATTGAGAGGACAAATTGGGTCAAGACCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGGACATTGTGAGGCCATCCAAGTTCCAGCAAATCCACAAAAATCAGCAACTAAAAACTCTTCAACAATGAACAACATAGCTTATGCTAGAGATGAAGCCTCCAATTACAAACCCATGAGCTGGAAATGCAAATGTGGAAGCTTAATCTTCAATCCTTAA

Coding sequence (CDS)

ATGGTGTGTGAGTGTAGTAGCAACAATGGCGTCATTGGCTCGCGCAGCAGAATCTTGTGTTCGACTGTTTCTCTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTTATGGCTGAAGGCAGATTGATTTCAGGGAGTGGCAAGACAGTGAATAATGAAGATAAAATGGTATTGAGAGGACAAATTGGGTCAAGACCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGGACATTGTGAGGCCATCCAAGTTCCAGCAAATCCACAAAAATCAGCAACTAAAAACTCTTCAACAATGAACAACATAGCTTATGCTAGAGATGAAGCCTCCAATTACAAACCCATGAGCTGGAAATGCAAATGTGGAAGCTTAATCTTCAATCCTTAA

Protein sequence

MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWKCKCGSLIFNP

Homology

[Close]

BLAST of HG10016620 vs. NCBI nr
Match: XP_038882800.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 3.6e-61
Identity = 120/130 (92.31%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNNEDKMVL 60
           M CEC  NNGV+GSRSRILCSTVSLLFFLILASTQMRFMAEGRLIS +GKTVN+EDK+VL
Sbjct: 1   MGCEC--NNGVMGSRSRILCSTVSLLFFLILASTQMRFMAEGRLISRNGKTVNDEDKVVL 60

Query: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWK 120
           RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSA KNSSTM NIAYARDEASNYKPMSWK
Sbjct: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSAIKNSSTMKNIAYARDEASNYKPMSWK 120

Query: 121 CKCGSLIFNP 131
           CKCGSLIFNP
Sbjct: 121 CKCGSLIFNP 128

[Close]

BLAST of HG10016620 vs. NCBI nr
Match: XP_038882801.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 234.6 bits (597), Expect = 4.9e-58
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNNEDKMVL 60
           M CEC  NNGV+GSRSRILCSTVSLLFFLILASTQMRFMAEGRLIS   + VN+EDK+VL
Sbjct: 1   MGCEC--NNGVMGSRSRILCSTVSLLFFLILASTQMRFMAEGRLIS---RNVNDEDKVVL 60

Query: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWK 120
           RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSA KNSSTM NIAYARDEASNYKPMSWK
Sbjct: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSAIKNSSTMKNIAYARDEASNYKPMSWK 120

Query: 121 CKCGSLIFNP 131
           CKCGSLIFNP
Sbjct: 121 CKCGSLIFNP 125

[Close]

BLAST of HG10016620 vs. NCBI nr
Match: XP_004143420.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-57
Identity = 119/132 (90.15%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNN-EDKM 60
           M CEC  NNGVIG RSR ILC  VSLLFFLILASTQMRFMAEGR IS +GKTVNN EDKM
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILASTQMRFMAEGRFISRNGKTVNNSEDKM 60

Query: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMS 120
           VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAYARDEASNYKPMS
Sbjct: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAYARDEASNYKPMS 120

Query: 121 WKCKCGSLIFNP 131
           WKCKCGSLIFNP
Sbjct: 121 WKCKCGSLIFNP 131

[Close]

BLAST of HG10016620 vs. NCBI nr
Match: XP_008440444.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis melo] >KAA0036385.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis melo var. makuwa] >TYK12781.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 4.2e-57
Identity = 118/132 (89.39%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNN-EDKM 60
           M CEC  NNGVIG RSR ILC  VSLLFFLIL STQMRFMAEGR IS +GKTVNN EDKM
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILVSTQMRFMAEGRFISRNGKTVNNSEDKM 60

Query: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMS 120
           VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAYARDEASNYKPMS
Sbjct: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAYARDEASNYKPMS 120

Query: 121 WKCKCGSLIFNP 131
           WKCKCGSLIFNP
Sbjct: 121 WKCKCGSLIFNP 131

[Close]

BLAST of HG10016620 vs. NCBI nr
Match: XP_022132530.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022132531.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia])

HSP 1 Score: 214.5 bits (545), Expect = 5.3e-52
Identity = 107/130 (82.31%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNNEDKMVL 60
           M CEC +NNGVIG RSRILC+TV  LF LILASTQMRFMAEGRL+   G+TV  E+K+VL
Sbjct: 1   MSCEC-NNNGVIG-RSRILCATVPFLFLLILASTQMRFMAEGRLVPKRGQTV-GEEKVVL 60

Query: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWK 120
           RGQIGSRPPKCERRCSWCGHCEAIQVP NPQKSA  NSS  NN+AYARDEASNYKPMSWK
Sbjct: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPTNPQKSANTNSSAFNNMAYARDEASNYKPMSWK 120

Query: 121 CKCGSLIFNP 131
           CKCGSLIFNP
Sbjct: 121 CKCGSLIFNP 127

[Close]

BLAST of HG10016620 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-23
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 25  LLFFLILASTQMRFMAEGRLISGS---GKTVNNEDKMVLRGQIGSRPPKCER-RCSWCGH 84
           LL  LIL ST    MA GR    S    K+ + + KM++RG IGSRPP+CER RC  CGH
Sbjct: 11  LLILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCGH 70

Query: 85  CEAIQVPANPQ-------KSATKNSSTMNNIAYAR-DEASNYKPMSWKCKCGSLIFNP 131
           CEAIQVP NPQ        +++ +SS   ++ Y R D+++NYKPMSWKCKCG+ I+NP
Sbjct: 71  CEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of HG10016620 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-09
Identity = 29/78 (37.18%), Postives = 40/78 (51.28%), Query Frame = 0


Query: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTM--------NNIAYARDEAS 120
           + ++GS PP C  RC+ C  C AIQVP  P +S     +          +++    D+ S
Sbjct: 45  KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 104

Query: 121 NYKPMSWKCKCGSLIFNP 131
           NYKPM WKC C    +NP
Sbjct: 105 NYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of HG10016620 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 53  NNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEAS 112
           N E+ +  R +IGS+PP CE++C  C  CEAIQ P            T+++I +     +
Sbjct: 46  NKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFP------------TISSIPHLSPHYA 104

Query: 113 NYKPMSWKCKC 124
           NY+P  W+C C
Sbjct: 106 NYQPEGWRCHC 104

[Close]

BLAST of HG10016620 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.3e-04
Identity = 36/127 (28.35%), Postives = 50/127 (39.37%), Query Frame = 0


Query: 10  GVIGSRSRILCSTVSLLFFLILASTQMRFMAEGRLI---SGS---GKTVNNEDKMVLRGQ 69
           G    R R L + +     L L S      A+GR I   +GS   G  + +  +    G 
Sbjct: 2   GTFRRRRRFLLAALVTFALLHLFSASSIVSADGRWIGQRTGSDLPGGFIRSNKRF---GG 61

Query: 70  IGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWKCKC 129
            GS PP C  +C  C  C+ + VP  P  S                    Y P +W+CKC
Sbjct: 62  PGSSPPTCRSKCGKCQPCKPVHVPIQPGLSM----------------PLEYYPEAWRCKC 109

Query: 130 GSLIFNP 131
           G+ +F P
Sbjct: 122 GNKLFMP 109

[Close]

BLAST of HG10016620 vs. ExPASy TrEMBL
Match: A0A0A0KGK0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G497000 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.9e-58
Identity = 119/132 (90.15%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNN-EDKM 60
           M CEC  NNGVIG RSR ILC  VSLLFFLILASTQMRFMAEGR IS +GKTVNN EDKM
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILASTQMRFMAEGRFISRNGKTVNNSEDKM 60

Query: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMS 120
           VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAYARDEASNYKPMS
Sbjct: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAYARDEASNYKPMS 120

Query: 121 WKCKCGSLIFNP 131
           WKCKCGSLIFNP
Sbjct: 121 WKCKCGSLIFNP 131

[Close]

BLAST of HG10016620 vs. ExPASy TrEMBL
Match: A0A5A7T4J5 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003700 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 118/132 (89.39%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNN-EDKM 60
           M CEC  NNGVIG RSR ILC  VSLLFFLIL STQMRFMAEGR IS +GKTVNN EDKM
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILVSTQMRFMAEGRFISRNGKTVNNSEDKM 60

Query: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMS 120
           VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAYARDEASNYKPMS
Sbjct: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAYARDEASNYKPMS 120

Query: 121 WKCKCGSLIFNP 131
           WKCKCGSLIFNP
Sbjct: 121 WKCKCGSLIFNP 131

[Close]

BLAST of HG10016620 vs. ExPASy TrEMBL
Match: A0A1S3B1V9 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103484886 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 118/132 (89.39%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNN-EDKM 60
           M CEC  NNGVIG RSR ILC  VSLLFFLIL STQMRFMAEGR IS +GKTVNN EDKM
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILVSTQMRFMAEGRFISRNGKTVNNSEDKM 60

Query: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMS 120
           VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAYARDEASNYKPMS
Sbjct: 61  VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAYARDEASNYKPMS 120

Query: 121 WKCKCGSLIFNP 131
           WKCKCGSLIFNP
Sbjct: 121 WKCKCGSLIFNP 131

[Close]

BLAST of HG10016620 vs. ExPASy TrEMBL
Match: A0A6J1BSQ3 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111005366 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.6e-52
Identity = 107/130 (82.31%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNNEDKMVL 60
           M CEC +NNGVIG RSRILC+TV  LF LILASTQMRFMAEGRL+   G+TV  E+K+VL
Sbjct: 1   MSCEC-NNNGVIG-RSRILCATVPFLFLLILASTQMRFMAEGRLVPKRGQTV-GEEKVVL 60

Query: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWK 120
           RGQIGSRPPKCERRCSWCGHCEAIQVP NPQKSA  NSS  NN+AYARDEASNYKPMSWK
Sbjct: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPTNPQKSANTNSSAFNNMAYARDEASNYKPMSWK 120

Query: 121 CKCGSLIFNP 131
           CKCGSLIFNP
Sbjct: 121 CKCGSLIFNP 127

[Close]

BLAST of HG10016620 vs. ExPASy TrEMBL
Match: A0A6J1HJ94 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111463445 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.7e-52
Identity = 111/130 (85.38%), Postives = 115/130 (88.46%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGRLISGSGKTVNNEDKMVL 60
           M CEC +NNGVIG RSRILC+TVS LFFLILASTQMRFMAEGR IS SGKTV +EDK+VL
Sbjct: 55  MGCEC-NNNGVIG-RSRILCATVSFLFFLILASTQMRFMAEGRSISKSGKTV-SEDKVVL 114

Query: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWK 120
           RGQIGSRPPKCERRCSWC HCEAIQVPANPQK     SS M NIAYARDEASNYKPMSWK
Sbjct: 115 RGQIGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSAMKNIAYARDEASNYKPMSWK 174

Query: 121 CKCGSLIFNP 131
           CKCGSLIFNP
Sbjct: 175 CKCGSLIFNP 176

[Close]

BLAST of HG10016620 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-24
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 25  LLFFLILASTQMRFMAEGRLISGS---GKTVNNEDKMVLRGQIGSRPPKCER-RCSWCGH 84
           LL  LIL ST    MA GR    S    K+ + + KM++RG IGSRPP+CER RC  CGH
Sbjct: 11  LLILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCGH 70

Query: 85  CEAIQVPANPQ-------KSATKNSSTMNNIAYAR-DEASNYKPMSWKCKCGSLIFNP 131
           CEAIQVP NPQ        +++ +SS   ++ Y R D+++NYKPMSWKCKCG+ I+NP
Sbjct: 71  CEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of HG10016620 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-10
Identity = 29/78 (37.18%), Postives = 40/78 (51.28%), Query Frame = 0


Query: 61  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTM--------NNIAYARDEAS 120
           + ++GS PP C  RC+ C  C AIQVP  P +S     +          +++    D+ S
Sbjct: 45  KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 104

Query: 121 NYKPMSWKCKCGSLIFNP 131
           NYKPM WKC C    +NP
Sbjct: 105 NYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of HG10016620 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-08
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 53  NNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEAS 112
           N E+ +  R +IGS+PP CE++C  C  CEAIQ P            T+++I +     +
Sbjct: 46  NKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFP------------TISSIPHLSPHYA 104

Query: 113 NYKPMSWKCKC 124
           NY+P  W+C C
Sbjct: 106 NYQPEGWRCHC 104

[Close]

BLAST of HG10016620 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 36/127 (28.35%), Postives = 50/127 (39.37%), Query Frame = 0


Query: 10  GVIGSRSRILCSTVSLLFFLILASTQMRFMAEGRLI---SGS---GKTVNNEDKMVLRGQ 69
           G    R R L + +     L L S      A+GR I   +GS   G  + +  +    G 
Sbjct: 2   GTFRRRRRFLLAALVTFALLHLFSASSIVSADGRWIGQRTGSDLPGGFIRSNKRF---GG 61

Query: 70  IGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWKCKC 129
            GS PP C  +C  C  C+ + VP  P  S                    Y P +W+CKC
Sbjct: 62  PGSSPPTCRSKCGKCQPCKPVHVPIQPGLSM----------------PLEYYPEAWRCKC 109

Query: 130 GSLIFNP 131
           G+ +F P
Sbjct: 122 GNKLFMP 109

[Close]

BLAST of HG10016620 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 32/111 (28.83%), Postives = 47/111 (42.34%), Query Frame = 0


Query: 25  LLFFLILASTQMRFMAEG-----RLISGSGKTVNNEDKMVLRGQIGSRPPKCERRCSWCG 84
           LLFF   ++  ++  + G     + I+ SG      D+  L G  GS PP C  +C  C 
Sbjct: 14  LLFFSSSSAASLQRPSGGLGQGKKEIARSGLPGQIVDQKRLGGP-GSVPPMCRLKCGKCE 73

Query: 85  HCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWKCKCGSLIFNP 131
            C+A+ VP  P                       Y P +W+CKCG+ +F P
Sbjct: 74  PCKAVHVPIQP----------------GLIMPLEYYPEAWRCKCGNKLFMP 107

The following BLAST results are available for this feature:

BLAST of HG10016620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882800.1	3.6e-61	92.31	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Benincasa hispida]	[more]
XP_038882801.1	4.9e-58	90.00	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Benincasa hispida]	[more]
XP_004143420.1	1.4e-57	90.15	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis sativus]	[more]
XP_008440444.1	4.2e-57	89.39	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis melo] >KAA0036385...	[more]
XP_022132530.1	5.3e-52	82.31	EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022132531.1...	[more]

BLAST of HG10016620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T068	1.8e-23	51.69	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LFT5	2.6e-09	37.18	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
C4B8C4	1.4e-07	36.62	EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q2V3I3	3.3e-04	28.35	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of HG10016620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGK0	6.9e-58	90.15	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G497...	[more]
A0A5A7T4J5	2.0e-57	89.39	Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B1V9	2.0e-57	89.39	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103484886...	[more]
A0A6J1BSQ3	2.6e-52	82.31	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1HJ94	5.7e-52	85.38	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of HG10016620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37810.1	1.3e-24	51.69	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G10310.1	1.8e-10	37.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13898.1	1.0e-08	36.62	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT4G14723.1	2.3e-05	28.35	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]
AT3G22820.1	1.5e-04	28.83	allergen-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 63..130 e-value: 5.3E-17 score: 61.5
None	No IPR available	PANTHER	PTHR33109:SF71	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2	coord: 8..130
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 8..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016620.1	HG10016620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane