HG10016613 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10016613
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 6449133 .. 6450418 (-)
RNA-Seq ExpressionHG10016613
SyntenyHG10016613
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGAGAGAAGAAATGGAGGCAATCTCCGGTGGGATTCCGCCGGAAAATTTGTTGAGGCCGAAGGAAACATTAGTGAGAAAGCGAAGAGAGGCAAGGTCAGGGGAAACGGTGCCGGCGAGGTCAAGGGAAGAGAGGTGGAGGGCAACGACGTGGCGGCGGGCGTCGCATGTGACGCCGAACCAGGTACAGTAGGCGGCGATGGCGGCGGCGTTCCAGGAGGAGAGAGAAGAACGAGGGTCGTCAGAAATGGAGGATTTGAGAGAGAGAAGGGCTTGGGATTCGGGTAGGAAGGCAGAGAAGGAAGTGGAAAAGTGAAGTTGAAGAAGCACAAAAACAAGAAGAAGCCACATTTGTTTGCATATAAAATTGCCTCTCATTTCTTCTTCTTCTTCTTCTTCTTCTTTTTGAATTCTGATATTCAGTGGAAGGAGGGGGAACTTAGGACGACTACACTCAGAAATTCAAGTTTCAATATTTATATTACTAAAAAAAAAAAAAAAAGTGAATTTTCTGCATAATTTTATTTATTTATTTATTTATTTTTTTGGCGTAGGGTATTATATTCTTAGAAGGTGGAAATTAGAATCTTATCTCATCAAAATTATTTCATATGACTTTACTTCAATATGCTCCAAGTAGAATAAGGTGAACTTGAACTAAACAACAAAATGCCTTTTTTAATTAAAATTACTTCGACAACTTAAAAAGAAATTAAGAAAATTGTATTGGGTAGCCAATTAAATATAGGATTTAGCAACTATACAATCAATTTTTTAAAAATTAAAAAATATGGAAAAATATTAATTTAGAAAATAACAAGATATTTAGGTGGGTTTAAACTTAAGGGCATTTAGTTAATTAAGCTTTGATGCCAATTTTGTAAATACGTGAATTTCTCCTAACTTTAGGGCACTCATCGTGAAACACGACAGAGAGAAAAATTTGAGGCAGTCGCATAACACATTATAAAGAGAGAGTTCTGTAGTTGTGTGAGAGAGATTGAAGTTTTTGTCGTCCAGTTGGGTCCCGATGTAGGAGTTTCGTACGGTAGTGAGTATTCGACACTTTTCGGTGTGGGTGATCTCCAGTTTGCAGAGCGTTTTCAGCCGTGTGGATCTCCTATGTAGAGGGAGTTTGTCTGGCGGTCTACAGTATTGTGGAGGAAACTGTGGCTATGGAAAAAGCAACTCCTACGAGTAAAAGGTTGAAGAAGGATAAATTCAATGGGTTTGTTGGAGATTGCTCTGTTTGTCATGAACAACTGAATGATGGAGGAAAATGA

mRNA sequence

ATGCTGGAGAGAAGAAATGGAGGCAATCTCCGGTGGGATTCCGCCGGAAAATTTGTTGAGGCCGAAGGAAACATTAGTGAGAAAGCGAAGAGAGGCAAGGTCAGGGGAAACGGTGCCGGCGAGGTCAAGGGAAGAGAGGTGGAGGGCAACGACGTGGCGGCGGGCGTCGCATGTGACGCCGAACCAGGTACAGTAGGCGGCGATGGCGGCGGCGTTCCAGGAGGAGAGAGAAGAACGAGGGTCGTCAGAAATGGAGGATTTGAGAGAGAGAAGGGCTTGGGATTCGGAGCGTTTTCAGCCGTGTGGATCTCCTATGTAGAGGGAGTTTGTCTGGCGGTCTACAGTATTGTGGAGGAAACTGTGGCTATGGAAAAAGCAACTCCTACGAGTAAAAGGTTGAAGAAGGATAAATTCAATGGGTTTGTTGGAGATTGCTCTGTTTGTCATGAACAACTGAATGATGGAGGAAAATGA

Coding sequence (CDS)

ATGCTGGAGAGAAGAAATGGAGGCAATCTCCGGTGGGATTCCGCCGGAAAATTTGTTGAGGCCGAAGGAAACATTAGTGAGAAAGCGAAGAGAGGCAAGGTCAGGGGAAACGGTGCCGGCGAGGTCAAGGGAAGAGAGGTGGAGGGCAACGACGTGGCGGCGGGCGTCGCATGTGACGCCGAACCAGGTACAGTAGGCGGCGATGGCGGCGGCGTTCCAGGAGGAGAGAGAAGAACGAGGGTCGTCAGAAATGGAGGATTTGAGAGAGAGAAGGGCTTGGGATTCGGAGCGTTTTCAGCCGTGTGGATCTCCTATGTAGAGGGAGTTTGTCTGGCGGTCTACAGTATTGTGGAGGAAACTGTGGCTATGGAAAAAGCAACTCCTACGAGTAAAAGGTTGAAGAAGGATAAATTCAATGGGTTTGTTGGAGATTGCTCTGTTTGTCATGAACAACTGAATGATGGAGGAAAATGA

Protein sequence

MLERRNGGNLRWDSAGKFVEAEGNISEKAKRGKVRGNGAGEVKGREVEGNDVAAGVACDAEPGTVGGDGGGVPGGERRTRVVRNGGFEREKGLGFGAFSAVWISYVEGVCLAVYSIVEETVAMEKATPTSKRLKKDKFNGFVGDCSVCHEQLNDGGK
Homology
[Close]
BLAST of HG10016613 vs. NCBI nr
Match: RDY02945.1 (hypothetical protein CR513_13533, partial [Mucuna pruriens])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-06
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0 

Query: 3   ERRNGGNLRWDSAGKFVEAEGNISEKAKRGKVRGNGAGEVKGREVEGNDVAAGVACDAEP 62
           E  NGG  R D AG+ V  EG + ++ + G V G GAGEV+  EVEG+DVAAGVA DA+P
Sbjct: 515 EGSNGGKRRGDGAGELVGGEGEVGKEWEVGDVGGEGAGEVEAGEVEGDDVAAGVAGDAKP 574

Query: 63  GTVGGDGGGVPGGERRTRVVRN 85
           G V    GG+P  + R   + N
Sbjct: 575 GAV--RCGGIPRRQNRRGGIGN 594

[Close]
BLAST of HG10016613 vs. ExPASy TrEMBL
Match: A0A371HJH1 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_13533 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0 

Query: 3   ERRNGGNLRWDSAGKFVEAEGNISEKAKRGKVRGNGAGEVKGREVEGNDVAAGVACDAEP 62
           E  NGG  R D AG+ V  EG + ++ + G V G GAGEV+  EVEG+DVAAGVA DA+P
Sbjct: 515 EGSNGGKRRGDGAGELVGGEGEVGKEWEVGDVGGEGAGEVEAGEVEGDDVAAGVAGDAKP 574

Query: 63  GTVGGDGGGVPGGERRTRVVRN 85
           G V    GG+P  + R   + N
Sbjct: 575 GAV--RCGGIPRRQNRRGGIGN 594

The following BLAST results are available for this feature:
BLAST of HG10016613 vs. NCBI nr
Match NameE-valueIdentityDescription
RDY02945.13.1e-0648.78hypothetical protein CR513_13533, partial [Mucuna pruriens][more]
BLAST of HG10016613 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10016613 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A371HJH11.5e-0648.78Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_13533 P... [more]
BLAST of HG10016613 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10016613.1HG10016613.1mRNA