HG10016613 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016613
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 6449133 .. 6450418 (-)
RNA-Seq Expression	HG10016613
Synteny	HG10016613

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAGAGAAGAAATGGAGGCAATCTCCGGTGGGATTCCGCCGGAAAATTTGTTGAGGCCGAAGGAAACATTAGTGAGAAAGCGAAGAGAGGCAAGGTCAGGGGAAACGGTGCCGGCGAGGTCAAGGGAAGAGAGGTGGAGGGCAACGACGTGGCGGCGGGCGTCGCATGTGACGCCGAACCAGGTACAGTAGGCGGCGATGGCGGCGGCGTTCCAGGAGGAGAGAGAAGAACGAGGGTCGTCAGAAATGGAGGATTTGAGAGAGAGAAGGGCTTGGGATTCGGGTAGGAAGGCAGAGAAGGAAGTGGAAAAGTGAAGTTGAAGAAGCACAAAAACAAGAAGAAGCCACATTTGTTTGCATATAAAATTGCCTCTCATTTCTTCTTCTTCTTCTTCTTCTTCTTTTTGAATTCTGATATTCAGTGGAAGGAGGGGGAACTTAGGACGACTACACTCAGAAATTCAAGTTTCAATATTTATATTACTAAAAAAAAAAAAAAAAGTGAATTTTCTGCATAATTTTATTTATTTATTTATTTATTTTTTTGGCGTAGGGTATTATATTCTTAGAAGGTGGAAATTAGAATCTTATCTCATCAAAATTATTTCATATGACTTTACTTCAATATGCTCCAAGTAGAATAAGGTGAACTTGAACTAAACAACAAAATGCCTTTTTTAATTAAAATTACTTCGACAACTTAAAAAGAAATTAAGAAAATTGTATTGGGTAGCCAATTAAATATAGGATTTAGCAACTATACAATCAATTTTTTAAAAATTAAAAAATATGGAAAAATATTAATTTAGAAAATAACAAGATATTTAGGTGGGTTTAAACTTAAGGGCATTTAGTTAATTAAGCTTTGATGCCAATTTTGTAAATACGTGAATTTCTCCTAACTTTAGGGCACTCATCGTGAAACACGACAGAGAGAAAAATTTGAGGCAGTCGCATAACACATTATAAAGAGAGAGTTCTGTAGTTGTGTGAGAGAGATTGAAGTTTTTGTCGTCCAGTTGGGTCCCGATGTAGGAGTTTCGTACGGTAGTGAGTATTCGACACTTTTCGGTGTGGGTGATCTCCAGTTTGCAGAGCGTTTTCAGCCGTGTGGATCTCCTATGTAGAGGGAGTTTGTCTGGCGGTCTACAGTATTGTGGAGGAAACTGTGGCTATGGAAAAAGCAACTCCTACGAGTAAAAGGTTGAAGAAGGATAAATTCAATGGGTTTGTTGGAGATTGCTCTGTTTGTCATGAACAACTGAATGATGGAGGAAAATGA

mRNA sequence

ATGCTGGAGAGAAGAAATGGAGGCAATCTCCGGTGGGATTCCGCCGGAAAATTTGTTGAGGCCGAAGGAAACATTAGTGAGAAAGCGAAGAGAGGCAAGGTCAGGGGAAACGGTGCCGGCGAGGTCAAGGGAAGAGAGGTGGAGGGCAACGACGTGGCGGCGGGCGTCGCATGTGACGCCGAACCAGGTACAGTAGGCGGCGATGGCGGCGGCGTTCCAGGAGGAGAGAGAAGAACGAGGGTCGTCAGAAATGGAGGATTTGAGAGAGAGAAGGGCTTGGGATTCGGAGCGTTTTCAGCCGTGTGGATCTCCTATGTAGAGGGAGTTTGTCTGGCGGTCTACAGTATTGTGGAGGAAACTGTGGCTATGGAAAAAGCAACTCCTACGAGTAAAAGGTTGAAGAAGGATAAATTCAATGGGTTTGTTGGAGATTGCTCTGTTTGTCATGAACAACTGAATGATGGAGGAAAATGA

Coding sequence (CDS)

ATGCTGGAGAGAAGAAATGGAGGCAATCTCCGGTGGGATTCCGCCGGAAAATTTGTTGAGGCCGAAGGAAACATTAGTGAGAAAGCGAAGAGAGGCAAGGTCAGGGGAAACGGTGCCGGCGAGGTCAAGGGAAGAGAGGTGGAGGGCAACGACGTGGCGGCGGGCGTCGCATGTGACGCCGAACCAGGTACAGTAGGCGGCGATGGCGGCGGCGTTCCAGGAGGAGAGAGAAGAACGAGGGTCGTCAGAAATGGAGGATTTGAGAGAGAGAAGGGCTTGGGATTCGGAGCGTTTTCAGCCGTGTGGATCTCCTATGTAGAGGGAGTTTGTCTGGCGGTCTACAGTATTGTGGAGGAAACTGTGGCTATGGAAAAAGCAACTCCTACGAGTAAAAGGTTGAAGAAGGATAAATTCAATGGGTTTGTTGGAGATTGCTCTGTTTGTCATGAACAACTGAATGATGGAGGAAAATGA

Protein sequence

MLERRNGGNLRWDSAGKFVEAEGNISEKAKRGKVRGNGAGEVKGREVEGNDVAAGVACDAEPGTVGGDGGGVPGGERRTRVVRNGGFEREKGLGFGAFSAVWISYVEGVCLAVYSIVEETVAMEKATPTSKRLKKDKFNGFVGDCSVCHEQLNDGGK

Homology

[Close]

BLAST of HG10016613 vs. NCBI nr
Match: RDY02945.1 (hypothetical protein CR513_13533, partial [Mucuna pruriens])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-06
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   ERRNGGNLRWDSAGKFVEAEGNISEKAKRGKVRGNGAGEVKGREVEGNDVAAGVACDAEP 62
           E  NGG  R D AG+ V  EG + ++ + G V G GAGEV+  EVEG+DVAAGVA DA+P
Sbjct: 515 EGSNGGKRRGDGAGELVGGEGEVGKEWEVGDVGGEGAGEVEAGEVEGDDVAAGVAGDAKP 574

Query: 63  GTVGGDGGGVPGGERRTRVVRN 85
           G V    GG+P  + R   + N
Sbjct: 575 GAV--RCGGIPRRQNRRGGIGN 594

[Close]

BLAST of HG10016613 vs. ExPASy TrEMBL
Match: A0A371HJH1 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_13533 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   ERRNGGNLRWDSAGKFVEAEGNISEKAKRGKVRGNGAGEVKGREVEGNDVAAGVACDAEP 62
           E  NGG  R D AG+ V  EG + ++ + G V G GAGEV+  EVEG+DVAAGVA DA+P
Sbjct: 515 EGSNGGKRRGDGAGELVGGEGEVGKEWEVGDVGGEGAGEVEAGEVEGDDVAAGVAGDAKP 574

Query: 63  GTVGGDGGGVPGGERRTRVVRN 85
           G V    GG+P  + R   + N
Sbjct: 575 GAV--RCGGIPRRQNRRGGIGN 594

The following BLAST results are available for this feature:

BLAST of HG10016613 vs. NCBI nr


Match Name	E-value	Identity	Description
RDY02945.1	3.1e-06	48.78	hypothetical protein CR513_13533, partial [Mucuna pruriens]	[more]

BLAST of HG10016613 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10016613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371HJH1	1.5e-06	48.78	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_13533 P...	[more]

BLAST of HG10016613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016613.1	HG10016613.1	mRNA