HG10016602 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016602
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein RMD5 homolog
Location	Chr03: 6308647 .. 6310370 (-)
RNA-Seq Expression	HG10016602
Synteny	HG10016602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGGATAGCATTAAAGATGCATTTGATCGTGTGACGAAGAAGCAGAAATTATCTTCTTCCAAAAGTCAAGAAGTAGTTGATCAAATCCATCTGGAACTGGAGCAGGTGCTACTAAAAATACAGTTAGCTGATAATCCGGAATTTCCAATTGATTTGAATTCTGTTCTTGCTGAACTCAAAACTAAATTGAAGGATATTGCCCCACTCACTCAGCTTGAAAGCACGCAAAAGGAGTTGAATGCTGCTCTGACCAAGTATCCAAAGCTTGTTGAAAAATCTTTCAATCCAGATATATCAAAAGCTTATAGAAACGTTGATTTTGATAGGCATACTGTTAACCAGATTATTGCTAGTCATTTCTATCGCCAAGGTATGTTTGAACTTGGTGACTGCTTTATTAGTGAGGCTGGCGAGTCAGAATCTGCTGCCGCGTTGAGGTCTCCATTTCAGGAAATGTATCAGATCCTTGAAGCCATGAAGTCCCGGAATCTAGAGCCAGCCCTGAACTGGGCTCTGAATAACTCAAATAAACTTAAGGAATGTGGGTCGGATCTTTTGCTAAAACTTCATAGCATGCAGTTCATGGAGATTCTACAGAAGGGAGATAGACATGACGCTTTGAAGTACGCTAGGACCTACCTGGCTCCTCTTGCATCCAACCACATGGCTGAACTTCAGAAGCTTATGGCTTGCCTATTGTGGACAGGAAGGCTTGATTGCTCCCCGTACTCTCATTCACAATTATTATCAGTAGCGAATTGGGATAAAGTTGCTGAGGAGCTTATAAGACAGTTTTGCAATTTTCTTGGTCAGTCCTACGAGAGCCCATTGGGTGTAACGGTTGCAGCAGGGGTCCAGGGATTGCCTCCCCTTCTGAAGTTTATGAATGTTATGGCTGGGAAGAAACAGGAATGGCAATCTATGAAGCAGTTGCCTGTTCCCGTGGAGTTGGACAGAGAATTTCAGTTCCATTCCATCTTTGTTTGTCCGGTGTCGAAGGAACAGTCAACCGAAGAAAATCCACCAATGTTAATGCTCTGTGGCCATGTTCTCTGCAAGCAGTCTATCATGAAGATGTCTAAAAACAGCACAAAATCGTTTAAGTGCCCGTATTGTCCAACAGACATTGATGCTACACGGTGTAGGCAACTGTACTTTTGACGCTTACCCAAAAGTCATGGTTAATGTTGTATGAAACTTCCTCTCTTCAACTGAACCAAAAATTGCTGGATTTAGTTGTGTGGTGTAACAAAGGGTGTGAAATGGGGGGAAAATGATGGTCAGTTGTGTACTGTTTGTTGCTGTATTTGTTGTAAATACATATTCTTTCTACGTGTTGGAATGTAGAGCAAGTCACTCCACAGACATCTTTTAAGCTTGATAGATTTACAGCATAGGAGTGTGTTTAGCTGCTTCTGGAGCTCACCTCCTACTAAATAAATATATTCTCCTTTTATTTTCTCAACATAAGTATAATTGAGATCAGGGAAATGTGAGCCCTATATGAAGTTACTTGGATTTTGTCAAATGAGACAGATATCTACCACCTCTTGGATGCTTAGGTTTTTGTGGCCCTTTCTTCAGGTATTGATTTGGCCATGGGCCTAATTTCATCAACATTAGGCCTTGCGATGGAGATGGTGGAATTTGATGTTAGGCCAATACAGATCCATGTCCCCTATCTCCCTAATATTCCAATCTGTGACAAGCTACAGTAG

mRNA sequence

ATGGAGTTGGATAGCATTAAAGATGCATTTGATCGTGTGACGAAGAAGCAGAAATTATCTTCTTCCAAAAGTCAAGAAGTAGTTGATCAAATCCATCTGGAACTGGAGCAGGTGCTACTAAAAATACAGTTAGCTGATAATCCGGAATTTCCAATTGATTTGAATTCTGTTCTTGCTGAACTCAAAACTAAATTGAAGGATATTGCCCCACTCACTCAGCTTGAAAGCACGCAAAAGGAGTTGAATGCTGCTCTGACCAAGTATCCAAAGCTTGTTGAAAAATCTTTCAATCCAGATATATCAAAAGCTTATAGAAACGTTGATTTTGATAGGCATACTGTTAACCAGATTATTGCTAGTCATTTCTATCGCCAAGGTATGTTTGAACTTGGTGACTGCTTTATTAGTGAGGCTGGCGAGTCAGAATCTGCTGCCGCGTTGAGGTCTCCATTTCAGGAAATGTATCAGATCCTTGAAGCCATGAAGTCCCGGAATCTAGAGCCAGCCCTGAACTGGGCTCTGAATAACTCAAATAAACTTAAGGAATGTGGGTCGGATCTTTTGCTAAAACTTCATAGCATGCAGTTCATGGAGATTCTACAGAAGGGAGATAGACATGACGCTTTGAAGTACGCTAGGACCTACCTGGCTCCTCTTGCATCCAACCACATGGCTGAACTTCAGAAGCTTATGGCTTGCCTATTGTGGACAGGAAGGCTTGATTGCTCCCCGTACTCTCATTCACAATTATTATCAGTAGCGAATTGGGATAAAGTTGCTGAGGAGCTTATAAGACAGTTTTGCAATTTTCTTGGTCAGTCCTACGAGAGCCCATTGGGTGTAACGGTTGCAGCAGGGGTCCAGGGATTGCCTCCCCTTCTGAAGTTTATGAATGTTATGGCTGGGAAGAAACAGGAATGGCAATCTATGAAGCAGTTGCCTGTTCCCGTGGAGTTGGACAGAGAATTTCAGTTCCATTCCATCTTTGTTTGTCCGGTGTCGAAGGAACAGTCAACCGAAGAAAATCCACCAATGTTAATGCTCTGTGGCCATGTTCTCTGCAAGCAGTCTATCATGAAGATGTCTAAAAACAGCACAAAATCGTTTAAGTGCCCGTATTGTCCAACAGACATTGATGCTACACGGTGTATTGATTTGGCCATGGGCCTAATTTCATCAACATTAGGCCTTGCGATGGAGATGGTGGAATTTGATGTTAGGCCAATACAGATCCATGTCCCCTATCTCCCTAATATTCCAATCTGTGACAAGCTACAGTAG

Coding sequence (CDS)

ATGGAGTTGGATAGCATTAAAGATGCATTTGATCGTGTGACGAAGAAGCAGAAATTATCTTCTTCCAAAAGTCAAGAAGTAGTTGATCAAATCCATCTGGAACTGGAGCAGGTGCTACTAAAAATACAGTTAGCTGATAATCCGGAATTTCCAATTGATTTGAATTCTGTTCTTGCTGAACTCAAAACTAAATTGAAGGATATTGCCCCACTCACTCAGCTTGAAAGCACGCAAAAGGAGTTGAATGCTGCTCTGACCAAGTATCCAAAGCTTGTTGAAAAATCTTTCAATCCAGATATATCAAAAGCTTATAGAAACGTTGATTTTGATAGGCATACTGTTAACCAGATTATTGCTAGTCATTTCTATCGCCAAGGTATGTTTGAACTTGGTGACTGCTTTATTAGTGAGGCTGGCGAGTCAGAATCTGCTGCCGCGTTGAGGTCTCCATTTCAGGAAATGTATCAGATCCTTGAAGCCATGAAGTCCCGGAATCTAGAGCCAGCCCTGAACTGGGCTCTGAATAACTCAAATAAACTTAAGGAATGTGGGTCGGATCTTTTGCTAAAACTTCATAGCATGCAGTTCATGGAGATTCTACAGAAGGGAGATAGACATGACGCTTTGAAGTACGCTAGGACCTACCTGGCTCCTCTTGCATCCAACCACATGGCTGAACTTCAGAAGCTTATGGCTTGCCTATTGTGGACAGGAAGGCTTGATTGCTCCCCGTACTCTCATTCACAATTATTATCAGTAGCGAATTGGGATAAAGTTGCTGAGGAGCTTATAAGACAGTTTTGCAATTTTCTTGGTCAGTCCTACGAGAGCCCATTGGGTGTAACGGTTGCAGCAGGGGTCCAGGGATTGCCTCCCCTTCTGAAGTTTATGAATGTTATGGCTGGGAAGAAACAGGAATGGCAATCTATGAAGCAGTTGCCTGTTCCCGTGGAGTTGGACAGAGAATTTCAGTTCCATTCCATCTTTGTTTGTCCGGTGTCGAAGGAACAGTCAACCGAAGAAAATCCACCAATGTTAATGCTCTGTGGCCATGTTCTCTGCAAGCAGTCTATCATGAAGATGTCTAAAAACAGCACAAAATCGTTTAAGTGCCCGTATTGTCCAACAGACATTGATGCTACACGGTGTATTGATTTGGCCATGGGCCTAATTTCATCAACATTAGGCCTTGCGATGGAGATGGTGGAATTTGATGTTAGGCCAATACAGATCCATGTCCCCTATCTCCCTAATATTCCAATCTGTGACAAGCTACAGTAG

Protein sequence

MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAELKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKLKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRLDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTDIDATRCIDLAMGLISSTLGLAMEMVEFDVRPIQIHVPYLPNIPICDKLQ

Homology

[Close]

BLAST of HG10016602 vs. NCBI nr
Match: KAG6594927.1 (Protein RMD5-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 758.4 bits (1957), Expect = 3.2e-215
Identity = 384/418 (91.87%), Postives = 394/418 (94.26%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MELDSIKDAFDRVTKKQKLSSSKS EVVDQIHLELEQVL KIQLADNPE P+DL SV +E
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQLADNPECPVDLKSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKELN ALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFISEAGESESAA++RSPFQEMYQILEAMKSRNL+PALNWALNNSNKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
            ECGSDLLLKLHSMQFMEILQ GDRHDALKYARTYLAPLASNH+AELQKLMACLLWTGRL
Sbjct: 181 NECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYS SQLLSV NW+KVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM
Sbjct: 241 DCSPYSQSQLLSVTNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKKQEWQSMKQLPVPVEL REFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK
Sbjct: 301 AGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDLAMGLISSTLGLAMEMVEFDVRPIQIHVPYLPN 419
           MSKNSTKSFKCPYCPTDIDATRC  LAMGLISS+ GL      F VRP+QIH P  P+
Sbjct: 361 MSKNSTKSFKCPYCPTDIDATRCW-LAMGLISSSFGLDDGDGGFVVRPLQIHAPSKPH 417

[Close]

BLAST of HG10016602 vs. NCBI nr
Match: KAG7034245.1 (SPBC29A3.03c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 757.3 bits (1954), Expect = 7.2e-215
Identity = 381/425 (89.65%), Postives = 396/425 (93.18%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MEL+SIKDAFDRVTKKQKLSSSKSQEVVDQIHLE+EQVL KIQ ADNPE PIDLNSV AE
Sbjct: 1   MELNSIKDAFDRVTKKQKLSSSKSQEVVDQIHLEMEQVLHKIQFADNPECPIDLNSVFAE 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LKTKLKDIAPL QLESTQKELNAA TKYPKLVEKSFNPDISKAYRNVDFDRHTV+ IIA 
Sbjct: 61  LKTKLKDIAPLAQLESTQKELNAARTKYPKLVEKSFNPDISKAYRNVDFDRHTVDHIIAR 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFISEAG+SES+A+LRSPFQEMYQILEAMK RNLEPA+NWALNNSNKL
Sbjct: 121 HFYRQGMFELGDCFISEAGQSESSASLRSPFQEMYQILEAMKYRNLEPAMNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSD+LLKLH+MQFM ILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDILLKLHTMQFMGILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYS SQL+SVANWDK+AEELIRQ+CNFLGQSYESPLGV VAAGVQGLP LLKFMNVM
Sbjct: 241 DCSPYSQSQLMSVANWDKIAEELIRQYCNFLGQSYESPLGVVVAAGVQGLPLLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKK EWQS KQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSI+K
Sbjct: 301 AGKKHEWQSTKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIIK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDLAMGLISSTLGLAMEMVEFDVRPIQIHVPYLPNIP 420
           MSKNSTKSFKCPYCPTDID+TRC D AMGLISS LGL     EF+VRPIQIH    P IP
Sbjct: 361 MSKNSTKSFKCPYCPTDIDSTRCTDSAMGLISSPLGLDDGDGEFNVRPIQIHASCHPTIP 420

Query: 421 ICDKL 426
           I DKL
Sbjct: 421 ISDKL 425

[Close]

BLAST of HG10016602 vs. NCBI nr
Match: XP_008440495.1 (PREDICTED: protein RMD5 homolog A [Cucumis melo] >XP_008440496.1 PREDICTED: protein RMD5 homolog A [Cucumis melo] >KAA0036368.1 protein RMD5-like protein A [Cucumis melo var. makuwa] >TYK12763.1 protein RMD5-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 752.7 bits (1942), Expect = 1.8e-213
Identity = 377/386 (97.67%), Postives = 381/386 (98.70%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MELDSIKDAFDRVTKKQKLSSSKSQEVVD+IHLELEQVL KIQLADNPE PIDLNSV AE
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDRIHLELEQVLQKIQLADNPECPIDLNSVFAE 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQL+STQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLDSTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFISEAGESESAA+LRSPFQEMYQILE+MKSRNLEPALNWALNNSNKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM
Sbjct: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK
Sbjct: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDL 387
           MSKNSTKSFKCPYCPTDIDATRC  L
Sbjct: 361 MSKNSTKSFKCPYCPTDIDATRCRQL 386

[Close]

BLAST of HG10016602 vs. NCBI nr
Match: XP_038883497.1 (protein RMD5 homolog [Benincasa hispida] >XP_038883498.1 protein RMD5 homolog [Benincasa hispida] >XP_038883499.1 protein RMD5 homolog [Benincasa hispida])

HSP 1 Score: 749.2 bits (1933), Expect = 1.9e-212
Identity = 376/386 (97.41%), Postives = 379/386 (98.19%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MELDSIKDAFDRVTKKQKLSSSKSQEV D+IHLELEQVL KIQLADNPE PIDL+SV AE
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVADKIHLELEQVLQKIQLADNPECPIDLSSVAAE 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LK KLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS
Sbjct: 61  LKAKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFISEAGESESAA+LRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM
Sbjct: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK
Sbjct: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDL 387
           MSKNSTKSFKCPYCPTDIDATRC  L
Sbjct: 361 MSKNSTKSFKCPYCPTDIDATRCRQL 386

[Close]

BLAST of HG10016602 vs. NCBI nr
Match: XP_004143429.1 (protein RMD5 homolog [Cucumis sativus] >XP_031743696.1 protein RMD5 homolog [Cucumis sativus] >KAE8647535.1 hypothetical protein Csa_003397 [Cucumis sativus])

HSP 1 Score: 748.4 bits (1931), Expect = 3.3e-212
Identity = 374/386 (96.89%), Postives = 379/386 (98.19%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MELDSIKDAFDRVTKKQKLSSSKSQEVVDQ+HLELEQVL KIQLADNPE PID+NSV A 
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQMHLELEQVLQKIQLADNPECPIDMNSVFAA 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKELN ALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFISEAGESESAA+LRSPFQEMYQILE+MKSRNLEPALNWALNNSNKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
           K+CGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KDCGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM
Sbjct: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK
Sbjct: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDL 387
           MSKNSTKSFKCPYCPTDIDATRC  L
Sbjct: 361 MSKNSTKSFKCPYCPTDIDATRCRQL 386

[Close]

BLAST of HG10016602 vs. ExPASy Swiss-Prot
Match: Q9T075 (Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 1.0e-126
Identity = 233/390 (59.74%), Postives = 299/390 (76.67%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPE-FPIDLNSVLA 60
           MEL SIKDAFDRV  KQKLS SK+ E+V  +  E+++ L  ++   + +   +D  S+LA
Sbjct: 1   MELKSIKDAFDRVATKQKLSYSKTNEIVHMLSQEIDKALSILEETPSSDTMLLDHRSILA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYR-NVDFDRHTVNQII 120
           ++K    +IAP+TQLE+T+KEL+AALTKYPK++EK  NPDISKAYR NV+FD H VNQII
Sbjct: 61  DVKKVFMEIAPITQLEATEKELHAALTKYPKVLEKQLNPDISKAYRHNVEFDTHIVNQII 120

Query: 121 ASHFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSN 180
           A+ FYRQGMF++GDCF++E GESE   + R  F EMY+ILEAMK R+LEPALNWA++NS+
Sbjct: 121 ANFFYRQGMFDIGDCFVAETGESE--CSTRQSFVEMYRILEAMKRRDLEPALNWAVSNSD 180

Query: 181 KLKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTG 240
           KLKE  SDL +KLHS+ F+EI +  +  +A+ YAR ++A  A + + E+QKLM  LLW  
Sbjct: 181 KLKEARSDLEMKLHSLHFLEIARGKNSKEAIDYARKHIATFADSCLPEIQKLMCSLLWNR 240

Query: 241 RLDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMN 300
           +LD SPY  S+ LS A W+   +EL RQ+CN LG+S ESPL +TV AG Q LP LLK+MN
Sbjct: 241 KLDKSPY--SEFLSPALWNNAVKELTRQYCNLLGESSESPLSITVTAGTQALPVLLKYMN 300

Query: 301 -VMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQS 360
            VMA KK +WQ+M+QLPV  +L  EFQFHS+FVCPVSKEQS+++NPPM+M CGHVLCKQ+
Sbjct: 301 VVMANKKLDWQTMEQLPVDAQLSEEFQFHSVFVCPVSKEQSSDDNPPMMMSCGHVLCKQT 360

Query: 361 IMKMSKNSTK-SFKCPYCPTDIDATRCIDL 387
           I KMSKN +K SFKCPYCPTD+D +RC  L
Sbjct: 361 INKMSKNGSKSSFKCPYCPTDVDISRCRQL 386

[Close]

BLAST of HG10016602 vs. ExPASy Swiss-Prot
Match: Q6GLP4 (E3 ubiquitin-protein ligase RMND5A OS=Xenopus laevis OX=8355 GN=rmnd5a PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.2e-51
Identity = 115/334 (34.43%), Postives = 194/334 (58.08%), Query Frame = 0


Query: 54  LNSVLAELKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVD----- 113
           L+ VL +   ++KD   + +L S  K++++++++  K ++K+F+ DIS     +D     
Sbjct: 57  LSLVLTQCCKRIKD--TVQKLASDHKDIHSSVSRVGKAIDKNFDADISSV--GIDGCWQT 116

Query: 114 FDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEP 173
             +  +++++  HF+RQGM ++ +    EA  S  A+  + PF E+ +ILEA+K R L P
Sbjct: 117 DSQRILSEVMVEHFFRQGMLDVAEELCQEASLSIDASQ-KEPFVELNRILEALKVRVLRP 176

Query: 174 ALNWALNNSNKLKECGSDLLLKLHSMQFMEILQKG--DRHDALKYARTYLAPLASNHMAE 233
           AL WA++N   L    S L  KLH + F+ +L  G  ++ +AL+YA+ +  P A NH  +
Sbjct: 177 ALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQQEALQYAKNF-QPFAENHQKD 236

Query: 234 LQKLMACLLWTGR-LDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAA 293
           +Q LM  L++  + ++ SPY H  LL    W  + +   R  C+ LG S ESPL V+ +A
Sbjct: 237 IQVLMGSLVYLRQGIENSPYVH--LLDANQWADICDIFTRDACSLLGLSVESPLSVSFSA 296

Query: 294 GVQGLPPLLKFMNVMAGKKQE--WQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENP 353
           G   LP L+    V+  ++    W    +LP+ V+L ++  +HSIF CP+ ++Q+TE NP
Sbjct: 297 GCVALPALINIKAVIEQRQCSGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTENNP 356

Query: 354 PMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTD 378
           PM ++CGH++ + ++ KM   S    KCPYCP +
Sbjct: 357 PMKLVCGHIISRDALNKMFNGS--KLKCPYCPME 380

[Close]

BLAST of HG10016602 vs. ExPASy Swiss-Prot
Match: Q640V2 (E3 ubiquitin-protein ligase RMND5A OS=Xenopus tropicalis OX=8364 GN=rmnd5a PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.8e-51
Identity = 114/332 (34.34%), Postives = 194/332 (58.43%), Query Frame = 0


Query: 54  LNSVLAELKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRN---VDFD 113
           L+ VL +   ++KD   + +L S  K++++++++  K ++K+F+ DIS    +    +  
Sbjct: 57  LSLVLTQCCKRIKD--TVQKLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQNDS 116

Query: 114 RHTVNQIIASHFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPAL 173
           +  +++++  HF+RQGM ++ +    EAG S  A+  + PF E+ +ILEA+K R L PAL
Sbjct: 117 QQILSEVMVEHFFRQGMLDVAEELCQEAGLSIDASQ-KEPFVELNRILEALKVRVLRPAL 176

Query: 174 NWALNNSNKLKECGSDLLLKLHSMQFMEILQKG--DRHDALKYARTYLAPLASNHMAELQ 233
            WA++N   L    S L  KLH + F+ +L  G  ++ +AL+YA+ +  P A NH  ++Q
Sbjct: 177 EWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQREALQYAKNF-QPFAENHQKDIQ 236

Query: 234 KLMACLLWTGR-LDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGV 293
            LM  L++  + ++ SPY H  LL    W  + +   R  C  LG S ESPL V+ +AG 
Sbjct: 237 VLMGSLVYLRQGIENSPYVH--LLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGC 296

Query: 294 QGLPPLLKFMNVMAGKK--QEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPM 353
             LP L+    V+  ++    W    +LP+ V+L ++  +HSIF CP+ ++Q+T+ NPPM
Sbjct: 297 VALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPM 356

Query: 354 LMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTD 378
            ++CGH++ + ++ KM   S    KCPYCP +
Sbjct: 357 KLVCGHIISRDALNKMFNGS--KLKCPYCPME 380

[Close]

BLAST of HG10016602 vs. ExPASy Swiss-Prot
Match: O59668 (LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC29A3.03c PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.9e-51
Identity = 117/354 (33.05%), Postives = 187/354 (52.82%), Query Frame = 0


Query: 56  SVLAELKTKLKDIAPLTQ--------LESTQKELNAALTKYPKLVEKSFNPDIS--KAYR 115
           S L +  T +K++   ++        L+ T+K+ + +L ++ K +EK FN D+   K + 
Sbjct: 35  SCLKDPTTSMKELVACSEKTQQVFDDLKRTEKKFHTSLNRFGKTLEKKFNFDLEDIKLHS 94

Query: 116 NVDFDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRN 175
           + +  +  ++  ++ HF+RQG  EL   F  EAG  E + +L   F  +  I++ ++ ++
Sbjct: 95  SFESKKREIDTALSLHFFRQGDVELAHLFCKEAGIEEPSESLH-VFTLLKSIVQGIRDKD 154

Query: 176 LEPALNWALNNSNKLKECGSDLLLKLHSMQFM-EILQKGDRHDALKYARTYLAPLASNHM 235
           L+  + WA      L+  GS L   L   + +   L   D   A++Y RT +A     H+
Sbjct: 155 LKLPIEWASQCRGYLERKGSSLEYTLQKYRLVSNYLTTKDIMAAIRYCRTNMAEFQKKHL 214

Query: 236 AELQKLMACLLWTGR---LDCSPYSHSQLLSV------------------ANWDKVAEEL 295
           A++QK M  L +  R   L  +  SH  +  +                   +W  +    
Sbjct: 215 ADIQKTMIALFFCSRNEVLSGTNDSHDSIHHIISNNAQLNIPQEYIDVLDLDWKSLELLF 274

Query: 296 IRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQEWQSMKQLPVPVELDREF 355
           +R+FC  LG S ESPL + V AG   LP LLK  ++M  K  EW S  +LPV + L   +
Sbjct: 275 VREFCAALGMSLESPLDIVVNAGAIALPILLKMSSIMKKKHTEWTSQGELPVEIFLPSSY 334

Query: 356 QFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTD 378
            FHS+F CPVSKEQ+TEENPPM+M CGHV+ K+S+ ++S+N ++ FKCPYCP +
Sbjct: 335 HFHSVFTCPVSKEQATEENPPMMMSCGHVIVKESLRQLSRNGSQRFKCPYCPNE 387

[Close]

BLAST of HG10016602 vs. ExPASy Swiss-Prot
Match: Q9H871 (E3 ubiquitin-protein transferase RMND5A OS=Homo sapiens OX=9606 GN=RMND5A PE=1 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.4e-50
Identity = 114/334 (34.13%), Postives = 193/334 (57.78%), Query Frame = 0


Query: 54  LNSVLAELKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVD----- 113
           L+ VL +   ++KD   + +L S  K++++++++  K ++K+F+ DIS     +D     
Sbjct: 57  LSLVLTQCCKRIKD--TVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSV--GIDGCWQA 116

Query: 114 FDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEP 173
             +  +N+++  HF+RQGM ++ +    E+G S   +  + PF E+ +ILEA+K R L P
Sbjct: 117 DSQRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQ-KEPFVELNRILEALKVRVLRP 176

Query: 174 ALNWALNNSNKLKECGSDLLLKLHSMQFMEILQKG--DRHDALKYARTYLAPLASNHMAE 233
           AL WA++N   L    S L  KLH + F+ +L  G  ++ +AL+YA+ +  P A NH  +
Sbjct: 177 ALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNF-QPFALNHQKD 236

Query: 234 LQKLMACLLWTGR-LDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAA 293
           +Q LM  L++  + ++ SPY H  LL    W  + +   R  C  LG S ESPL V+ +A
Sbjct: 237 IQVLMGSLVYLRQGIENSPYVH--LLDANQWADICDIFTRDACALLGLSVESPLSVSFSA 296

Query: 294 GVQGLPPLLKFMNVMAGKK--QEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENP 353
           G   LP L+    V+  ++    W    +LP+ V+L ++  +HSIF CP+ ++Q+T+ NP
Sbjct: 297 GCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNP 356

Query: 354 PMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTD 378
           PM ++CGH++ + ++ KM   S    KCPYCP +
Sbjct: 357 PMKLVCGHIISRDALNKMFNGS--KLKCPYCPME 380

[Close]

BLAST of HG10016602 vs. ExPASy TrEMBL
Match: A0A1S3B0U3 (protein RMD5 homolog A OS=Cucumis melo OX=3656 GN=LOC103484906 PE=4 SV=1)

HSP 1 Score: 752.7 bits (1942), Expect = 8.5e-214
Identity = 377/386 (97.67%), Postives = 381/386 (98.70%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MELDSIKDAFDRVTKKQKLSSSKSQEVVD+IHLELEQVL KIQLADNPE PIDLNSV AE
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDRIHLELEQVLQKIQLADNPECPIDLNSVFAE 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQL+STQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLDSTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFISEAGESESAA+LRSPFQEMYQILE+MKSRNLEPALNWALNNSNKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM
Sbjct: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK
Sbjct: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDL 387
           MSKNSTKSFKCPYCPTDIDATRC  L
Sbjct: 361 MSKNSTKSFKCPYCPTDIDATRCRQL 386

[Close]

BLAST of HG10016602 vs. ExPASy TrEMBL
Match: A0A5D3CLJ0 (Protein RMD5-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003520 PE=4 SV=1)

HSP 1 Score: 752.7 bits (1942), Expect = 8.5e-214
Identity = 377/386 (97.67%), Postives = 381/386 (98.70%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MELDSIKDAFDRVTKKQKLSSSKSQEVVD+IHLELEQVL KIQLADNPE PIDLNSV AE
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDRIHLELEQVLQKIQLADNPECPIDLNSVFAE 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQL+STQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLDSTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFISEAGESESAA+LRSPFQEMYQILE+MKSRNLEPALNWALNNSNKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM
Sbjct: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK
Sbjct: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDL 387
           MSKNSTKSFKCPYCPTDIDATRC  L
Sbjct: 361 MSKNSTKSFKCPYCPTDIDATRCRQL 386

[Close]

BLAST of HG10016602 vs. ExPASy TrEMBL
Match: A0A6J1BU35 (protein RMD5 homolog A-like OS=Momordica charantia OX=3673 GN=LOC111005703 PE=4 SV=1)

HSP 1 Score: 738.0 bits (1904), Expect = 2.2e-209
Identity = 366/386 (94.82%), Postives = 376/386 (97.41%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MELDSIKD FDRVTKKQKLSSSKSQEV+DQIHLELEQVL K+QLADNPE PIDLNSV +E
Sbjct: 1   MELDSIKDVFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLADNPECPIDLNSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKELN AL+KYPKL+EKSFNPDISKAYRNVDFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFI+EAGESESAA++RSPFQEMYQILEAMKSRNLEPALNWALNNS+KL
Sbjct: 121 HFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYS SQLLS  NW+KVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM
Sbjct: 241 DCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK
Sbjct: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDL 387
           MSKNSTKSFKCPYCPTDIDATRC  L
Sbjct: 361 MSKNSTKSFKCPYCPTDIDATRCRQL 386

[Close]

BLAST of HG10016602 vs. ExPASy TrEMBL
Match: A0A6J1HGI0 (protein RMD5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463351 PE=4 SV=1)

HSP 1 Score: 733.4 bits (1892), Expect = 5.4e-208
Identity = 366/386 (94.82%), Postives = 373/386 (96.63%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MELDSIKDAFDRVTKKQKLSSSKS EVVDQIHLELEQVL KIQLADNPE P+DL SV +E
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQLADNPECPVDLKSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKELN ALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFISEAGESESAA++RSPFQEMYQILEAMKSRNL+PALNWALNNSNKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
            ECGSDLLLKLHSMQFMEILQ GDRHDALKYARTYLAPLASNH+AELQKLMACLLWTGRL
Sbjct: 181 NECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYS SQLLSV NW+KVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM
Sbjct: 241 DCSPYSQSQLLSVTNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKKQEWQSMKQLPVPVEL REFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK
Sbjct: 301 AGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDL 387
           MSKNSTKSFKCPYCPTDIDATRC  L
Sbjct: 361 MSKNSTKSFKCPYCPTDIDATRCRQL 386

[Close]

BLAST of HG10016602 vs. ExPASy TrEMBL
Match: A0A6J1KU15 (protein RMD5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111497206 PE=4 SV=1)

HSP 1 Score: 729.6 bits (1882), Expect = 7.7e-207
Identity = 364/386 (94.30%), Postives = 372/386 (96.37%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MELDSIKDAFDRVTKKQKLSSSKS EVVDQIHLELEQVL KIQLADNPE P++L SV +E
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQLADNPECPVNLKSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKELN ALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
           HFYRQGMFELGDCFISEAGESESAA++RSPFQEMYQILEAMKSRNL+PALNWALNNSNKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240
            ECGSDLLLKLHSMQFMEILQ GDRHDALKYARTYLAPLASNH+AELQKLMACLLWTGRL
Sbjct: 181 NECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGRL 240

Query: 241 DCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300
           DCSPYS SQLLSV NW+ VAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM
Sbjct: 241 DCSPYSQSQLLSVTNWENVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVM 300

Query: 301 AGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360
           AGKKQEWQSMKQLPVPVEL REFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK
Sbjct: 301 AGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMK 360

Query: 361 MSKNSTKSFKCPYCPTDIDATRCIDL 387
           MSKNSTKSFKCPYCPTDIDATRC  L
Sbjct: 361 MSKNSTKSFKCPYCPTDIDATRCRQL 386

[Close]

BLAST of HG10016602 vs. TAIR 10
Match: AT4G37880.1 (LisH/CRA/RING-U-box domains-containing protein )

HSP 1 Score: 454.9 bits (1169), Expect = 7.1e-128
Identity = 233/390 (59.74%), Postives = 299/390 (76.67%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPE-FPIDLNSVLA 60
           MEL SIKDAFDRV  KQKLS SK+ E+V  +  E+++ L  ++   + +   +D  S+LA
Sbjct: 1   MELKSIKDAFDRVATKQKLSYSKTNEIVHMLSQEIDKALSILEETPSSDTMLLDHRSILA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYR-NVDFDRHTVNQII 120
           ++K    +IAP+TQLE+T+KEL+AALTKYPK++EK  NPDISKAYR NV+FD H VNQII
Sbjct: 61  DVKKVFMEIAPITQLEATEKELHAALTKYPKVLEKQLNPDISKAYRHNVEFDTHIVNQII 120

Query: 121 ASHFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSN 180
           A+ FYRQGMF++GDCF++E GESE   + R  F EMY+ILEAMK R+LEPALNWA++NS+
Sbjct: 121 ANFFYRQGMFDIGDCFVAETGESE--CSTRQSFVEMYRILEAMKRRDLEPALNWAVSNSD 180

Query: 181 KLKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTG 240
           KLKE  SDL +KLHS+ F+EI +  +  +A+ YAR ++A  A + + E+QKLM  LLW  
Sbjct: 181 KLKEARSDLEMKLHSLHFLEIARGKNSKEAIDYARKHIATFADSCLPEIQKLMCSLLWNR 240

Query: 241 RLDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMN 300
           +LD SPY  S+ LS A W+   +EL RQ+CN LG+S ESPL +TV AG Q LP LLK+MN
Sbjct: 241 KLDKSPY--SEFLSPALWNNAVKELTRQYCNLLGESSESPLSITVTAGTQALPVLLKYMN 300

Query: 301 -VMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQS 360
            VMA KK +WQ+M+QLPV  +L  EFQFHS+FVCPVSKEQS+++NPPM+M CGHVLCKQ+
Sbjct: 301 VVMANKKLDWQTMEQLPVDAQLSEEFQFHSVFVCPVSKEQSSDDNPPMMMSCGHVLCKQT 360

Query: 361 IMKMSKNSTK-SFKCPYCPTDIDATRCIDL 387
           I KMSKN +K SFKCPYCPTD+D +RC  L
Sbjct: 361 INKMSKNGSKSSFKCPYCPTDVDISRCRQL 386

[Close]

BLAST of HG10016602 vs. TAIR 10
Match: AT2G22690.1 (zinc ion binding )

HSP 1 Score: 426.0 bits (1094), Expect = 3.5e-119
Identity = 219/388 (56.44%), Postives = 285/388 (73.45%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MEL ++KDAFDRVTKKQKL  SK+ EVVD++  E+++ L  IQ  DN E      SV+A+
Sbjct: 1   MELKNVKDAFDRVTKKQKLCYSKTHEVVDKMSQEIDKALKTIQ-EDNHE------SVVAD 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LK   ++IAP+  LE++QKE+N  LTKYPK ++K+ NPDIS AYRNV FD HTV+QI+A 
Sbjct: 61  LKKTFEEIAPINLLEASQKEINGVLTKYPKALDKTLNPDISTAYRNVKFDTHTVHQILAQ 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
            FYRQGM+++GDCFISE GE +  +++   F EM  ILEAMK R+L PAL W  +NS+KL
Sbjct: 121 FFYRQGMYDVGDCFISETGEVKPESSVTKAFMEMNMILEAMKERDLGPALKWVASNSDKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNH--MAELQKLMACLLWTG 240
           KE  SDL LKLHS+ F+EI +     +A+ YAR + A  +++     E+QKLM  LLW  
Sbjct: 181 KEAKSDLELKLHSLHFLEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLMCSLLWIR 240

Query: 241 RLDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMN 300
            L+ SPY  S+ LS   W   A+EL RQ+C  LG+S ESPL VTVAAG Q LP  LK++N
Sbjct: 241 NLNKSPY--SEFLSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGSQVLPTFLKYLN 300

Query: 301 VMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSI 360
           V+  K++EWQ+M+QL VPVEL  E++F+S+FVCPVSKE S+E+NPPM + CGHVLCKQSI
Sbjct: 301 VLPEKRKEWQTMEQLLVPVELSEEYRFYSVFVCPVSKEHSSEDNPPMRLACGHVLCKQSI 360

Query: 361 MKMSKNSTKSFKCPYCPTDIDATRCIDL 387
            +MS+N ++SFKCPYCPTDIDA++C  L
Sbjct: 361 NRMSRNGSRSFKCPYCPTDIDASQCKQL 379

[Close]

BLAST of HG10016602 vs. TAIR 10
Match: AT2G22690.2 (zinc ion binding )

HSP 1 Score: 426.0 bits (1094), Expect = 3.5e-119
Identity = 219/388 (56.44%), Postives = 285/388 (73.45%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAE 60
           MEL ++KDAFDRVTKKQKL  SK+ EVVD++  E+++ L  IQ  DN E      SV+A+
Sbjct: 1   MELKNVKDAFDRVTKKQKLCYSKTHEVVDKMSQEIDKALKTIQ-EDNHE------SVVAD 60

Query: 61  LKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120
           LK   ++IAP+  LE++QKE+N  LTKYPK ++K+ NPDIS AYRNV FD HTV+QI+A 
Sbjct: 61  LKKTFEEIAPINLLEASQKEINGVLTKYPKALDKTLNPDISTAYRNVKFDTHTVHQILAQ 120

Query: 121 HFYRQGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKL 180
            FYRQGM+++GDCFISE GE +  +++   F EM  ILEAMK R+L PAL W  +NS+KL
Sbjct: 121 FFYRQGMYDVGDCFISETGEVKPESSVTKAFMEMNMILEAMKERDLGPALKWVASNSDKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNH--MAELQKLMACLLWTG 240
           KE  SDL LKLHS+ F+EI +     +A+ YAR + A  +++     E+QKLM  LLW  
Sbjct: 181 KEAKSDLELKLHSLHFLEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLMCSLLWIR 240

Query: 241 RLDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMN 300
            L+ SPY  S+ LS   W   A+EL RQ+C  LG+S ESPL VTVAAG Q LP  LK++N
Sbjct: 241 NLNKSPY--SEFLSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGSQVLPTFLKYLN 300

Query: 301 VMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSI 360
           V+  K++EWQ+M+QL VPVEL  E++F+S+FVCPVSKE S+E+NPPM + CGHVLCKQSI
Sbjct: 301 VLPEKRKEWQTMEQLLVPVELSEEYRFYSVFVCPVSKEHSSEDNPPMRLACGHVLCKQSI 360

Query: 361 MKMSKNSTKSFKCPYCPTDIDATRCIDL 387
            +MS+N ++SFKCPYCPTDIDA++C  L
Sbjct: 361 NRMSRNGSRSFKCPYCPTDIDASQCKQL 379

[Close]

BLAST of HG10016602 vs. TAIR 10
Match: AT5G09630.1 (LisH/CRA/RING-U-box domains-containing protein )

HSP 1 Score: 354.0 bits (907), Expect = 1.7e-97
Identity = 184/385 (47.79%), Postives = 270/385 (70.13%), Query Frame = 0


Query: 5   SIKDAFDRVTKKQKLSSSKSQEVVDQIHLELEQVLLKIQLADNPEFPIDLNSVLAELKTK 64
           +++DAFDRV+KKQKL  S +Q+V+D +   ++  L +IQL ++    ++  SVL EL+ K
Sbjct: 8   TVRDAFDRVSKKQKLYHSVTQDVIDLVCDGIQDTLTRIQLGNDD--GVEPESVLTELRRK 67

Query: 65  LKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIASHFYR 124
           L  + P+ QL+ + KE   +L+K  KL+E S++PDIS A  +VDFD + VN+I+  H YR
Sbjct: 68  LDALLPIIQLQKSHKETKWSLSKLVKLLEVSYHPDISLACFSVDFDINLVNKILIHHCYR 127

Query: 125 QGMFELGDCFISEAGESESAAALRSPFQEMYQILEAMKSRNLEPALNWALNNSNKLKECG 184
           +G+F++GDC + EAG  E    +RS F E +QI++++K RN+EPA+ W   N  KLK+  
Sbjct: 128 EGLFDVGDCLVKEAGREEE-TEVRSQFLEFHQIVDSLKLRNIEPAMRWIFANRGKLKQKS 187

Query: 185 SDLLLKLHSMQFMEILQKGDRHDALKYARTYLA--PLASNHMAELQKLMACLLWTGRLDC 244
           S L  KL S+++ +IL++G   DAL+YART+    PL   H  E+QKL+ CLLW G  + 
Sbjct: 188 SKLEFKLLSLKYCDILREGKSDDALEYARTHFTQYPL---HFKEIQKLITCLLWIGNFEK 247

Query: 245 SPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAG 304
           SPY  ++++S + WDKV +ELI ++ + L Q   SPL V ++AG + LP LLK +++MA 
Sbjct: 248 SPY--AEIVSPSCWDKVTKELIMEYHHLLDQPINSPLKVALSAGYESLPSLLKLVHLMAL 307

Query: 305 KKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMS 364
            KQEWQ+MKQLPVP+EL  E++FHS FVCPVS++QS+EENPPM + CGHV+ KQS+M++S
Sbjct: 308 TKQEWQAMKQLPVPLELGNEYKFHSAFVCPVSRDQSSEENPPMQLPCGHVISKQSMMRLS 367

Query: 365 KN-STKSFKCPYCPTDIDATRCIDL 387
           KN + ++FKCPYCP +  A+ C  L
Sbjct: 368 KNCAFRTFKCPYCPAETLASACRQL 384

[Close]

BLAST of HG10016602 vs. TAIR 10
Match: AT3G55070.1 (LisH/CRA/RING-U-box domains-containing protein )

HSP 1 Score: 107.5 bits (267), Expect = 2.8e-23
Identity = 82/336 (24.40%), Postives = 156/336 (46.43%), Query Frame = 0


Query: 43  QLADNPEFPIDLNSVLAELKTKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISK 102
           +LAD+     D  S L  L T+L+ +    +LE      N    +    ++   + D+  
Sbjct: 79  ELADSDWSKDDTVSRLTCLVTRLQGLK--RKLEEGSNVENLQAQRCRARIDHLDSVDVEN 138

Query: 103 AYRNVDFDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAAAL--RSPFQEMYQILEA 162
                +++   + +I+  +  R   FE      ++  ES +   L     F+E  ++++A
Sbjct: 139 I---TEWNNTKLKRILVDYMLRMSYFETA----TKLSESSNIMDLVDIDIFREAKKVIDA 198

Query: 163 MKSRNLEPALNWALNNSNKLKECGSDLLLKLHSMQFMEILQKGDRHD---ALKYARTYLA 222
           +K+R +  AL W  +N  +LK+  S    +L   +F+E+++         A++YAR +LA
Sbjct: 199 LKNREVASALTWCADNKTRLKKSKSKFEFQLRLQEFIELVRVDTAESYKKAIQYARKHLA 258

Query: 223 PLASNHMAELQKLMACLLWTGRLDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYES 282
              + HM ELQ ++A L +    +CS Y    L  +  WD + ++  ++FC   G + E 
Sbjct: 259 SWGTTHMKELQHVLATLAFKSTTECSKY--KVLFELRQWDVLVDQFKQEFCKLYGMTMEP 318

Query: 283 PLGVTVAAGVQGL-PPLLKFMNVMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKE 342
            L + + AG+  L  P               ++ ++L +P+   +  Q HS  VC +SKE
Sbjct: 319 LLNIYLQAGLSALKTPYGLEEGCTKEDPLSQENFRKLALPLPFSK--QHHSKLVCYISKE 378

Query: 343 QSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCP 373
               ENPP ++  G+V   +++ +M++ +     CP
Sbjct: 379 LMDTENPPQVLPNGYVYSTKALKEMAEKNGGKITCP 401

The following BLAST results are available for this feature:

BLAST of HG10016602 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594927.1	3.2e-215	91.87	Protein RMD5-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7034245.1	7.2e-215	89.65	SPBC29A3.03c, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008440495.1	1.8e-213	97.67	PREDICTED: protein RMD5 homolog A [Cucumis melo] >XP_008440496.1 PREDICTED: prot...	[more]
XP_038883497.1	1.9e-212	97.41	protein RMD5 homolog [Benincasa hispida] >XP_038883498.1 protein RMD5 homolog [B...	[more]
XP_004143429.1	3.3e-212	96.89	protein RMD5 homolog [Cucumis sativus] >XP_031743696.1 protein RMD5 homolog [Cuc...	[more]

BLAST of HG10016602 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T075	1.0e-126	59.74	Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1	[more]
Q6GLP4	5.2e-51	34.43	E3 ubiquitin-protein ligase RMND5A OS=Xenopus laevis OX=8355 GN=rmnd5a PE=1 SV=1	[more]
Q640V2	6.8e-51	34.34	E3 ubiquitin-protein ligase RMND5A OS=Xenopus tropicalis OX=8364 GN=rmnd5a PE=2 ...	[more]
O59668	8.9e-51	33.05	LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9H871	3.4e-50	34.13	E3 ubiquitin-protein transferase RMND5A OS=Homo sapiens OX=9606 GN=RMND5A PE=1 S...	[more]

BLAST of HG10016602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B0U3	8.5e-214	97.67	protein RMD5 homolog A OS=Cucumis melo OX=3656 GN=LOC103484906 PE=4 SV=1	[more]
A0A5D3CLJ0	8.5e-214	97.67	Protein RMD5-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1BU35	2.2e-209	94.82	protein RMD5 homolog A-like OS=Momordica charantia OX=3673 GN=LOC111005703 PE=4 ...	[more]
A0A6J1HGI0	5.4e-208	94.82	protein RMD5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463351 PE=4 SV=1	[more]
A0A6J1KU15	7.7e-207	94.30	protein RMD5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111497206 PE=4 SV=1	[more]

BLAST of HG10016602 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37880.1	7.1e-128	59.74	LisH/CRA/RING-U-box domains-containing protein	[more]
AT2G22690.1	3.5e-119	56.44	zinc ion binding	[more]
AT2G22690.2	3.5e-119	56.44	zinc ion binding	[more]
AT5G09630.1	1.7e-97	47.79	LisH/CRA/RING-U-box domains-containing protein	[more]
AT3G55070.1	2.8e-23	24.40	LisH/CRA/RING-U-box domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013144	CRA domain	SMART	SM00757	toby_final6	coord: 203..299 e-value: 1.5E-18 score: 77.6
IPR006595	CTLH, C-terminal LisH motif	SMART	SM00668	ctlh	coord: 150..207 e-value: 1.5E-8 score: 44.4
IPR006595	CTLH, C-terminal LisH motif	PROSITE	PS50897	CTLH	coord: 150..207 score: 11.360861
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 331..374 e-value: 8.0E-4 score: 28.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 331..374 score: 8.683004
IPR006594	LIS1 homology motif	SMART	SM00667	Lish	coord: 110..142 e-value: 0.0025 score: 27.1
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 110..142 score: 9.32115
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 321..392 e-value: 3.3E-9 score: 37.8
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 331..372 e-value: 2.3E-9 score: 37.1
IPR024964	CTLH/CRA C-terminal to LisH motif domain	PFAM	PF10607	CLTH	coord: 151..291 e-value: 4.7E-31 score: 107.7
None	No IPR available	PANTHER	PTHR12170:SF11	PROTEIN RMD5 HOMOLOG	coord: 1..387
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 325..381
IPR045098	Fyv10 family	PANTHER	PTHR12170	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	coord: 1..387
IPR044063	Gid-type RING finger domain	PROSITE	PS51867	ZF_RING_GID	coord: 331..374 score: 13.15673
IPR037683	Rmd5, degenerated RING (dRING) finger	CDD	cd16652	dRing_Rmd5p_like	coord: 329..375 e-value: 1.19664E-28 score: 104.643

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016602.1	HG10016602.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0034657	GID complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity