HG10016579 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016579
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein SKIP34
Location	Chr03: 6125880 .. 6126170 (+)
RNA-Seq Expression	HG10016579
Synteny	HG10016579

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAACGGCCACCACCGATCTTTGTTCAAAGGTATCCTTTCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGAGGAAACCGAGTCGCGGCTAGCTCAAGTTAGGGCTCGAGAGGTAGAGCTCAGCCGACTCTTGGAGGAAATGAAACGAATAGTCTCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTATAAAATAG

mRNA sequence

ATGTGTAACGGCCACCACCGATCTTTGTTCAAAGGTATCCTTTCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGAGGAAACCGAGTCGCGGCTAGCTCAAGTTAGGGCTCGAGAGGTAGAGCTCAGCCGACTCTTGGAGGAAATGAAACGAATAGTCTCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTATAAAATAG

Coding sequence (CDS)

ATGTGTAACGGCCACCACCGATCTTTGTTCAAAGGTATCCTTTCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGAGGAAACCGAGTCGCGGCTAGCTCAAGTTAGGGCTCGAGAGGTAGAGCTCAGCCGACTCTTGGAGGAAATGAAACGAATAGTCTCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTATAAAATAG

Protein sequence

MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

Homology

[Close]

BLAST of HG10016579 vs. NCBI nr
Match: XP_011657944.1 (protein SKIP34 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.7e-37
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MCNGHHR LF+G L PYQTSVPENG  SVVDNLRGRLEETE RLAQVRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of HG10016579 vs. NCBI nr
Match: XP_008440533.1 (PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis melo var. makuwa] >TYK12742.1 protein SKIP34 [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MCNGHHR LF+G   PYQTSVPENG ASVVDNLRGRLEETE RLAQVRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of HG10016579 vs. NCBI nr
Match: XP_023544310.1 (protein SKIP34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MCNGHHRSLF+G +SP QTSVPENGDASVVDNLRGRL ETESRLAQVRARE  LSRLLEE
Sbjct: 1  MCNGHHRSLFRGTISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRLLEE 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR+V VMEILENYLKR+Y DRQEYVVRLL+PVS K
Sbjct: 61 MKRLVCVMEILENYLKRRYRDRQEYVVRLLAPVSRK 96

[Close]

BLAST of HG10016579 vs. NCBI nr
Match: XP_022950522.1 (protein SKIP34 [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREVELSRLLE 60
          MCNGHHRSLF+G +SP QTSVPEN GDASVVDNLRGRL ETESRLAQVRARE  LSRLLE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 61 EMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          EMKR+VSVMEILENYLKR+YSDRQEYVVRLL+PVS K
Sbjct: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 97

[Close]

BLAST of HG10016579 vs. NCBI nr
Match: XP_022978829.1 (protein SKIP34 [Cucurbita maxima])

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 81/96 (84.38%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MCNGHHRSLF+G +SP QTSVPENGDASVVDNLRGRL ETESRLAQVRARE  LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR+VSVMEIL+NYLKR+Y DRQEYVVRLL+P+S K
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96

[Close]

BLAST of HG10016579 vs. ExPASy Swiss-Prot
Match: Q8GWU7 (Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-17
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MC GH++SL     S  +    +  D SVVD+LR RL ETE+RL + RARE ELSR LE 
Sbjct: 1  MCYGHNQSL--SSRSSLRRRSHDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

[Close]

BLAST of HG10016579 vs. ExPASy TrEMBL
Match: A0A0A0KIR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MCNGHHR LF+G L PYQTSVPENG  SVVDNLRGRLEETE RLAQVRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of HG10016579 vs. ExPASy TrEMBL
Match: A0A5D3CN14 (Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003300 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MCNGHHR LF+G   PYQTSVPENG ASVVDNLRGRLEETE RLAQVRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of HG10016579 vs. ExPASy TrEMBL
Match: A0A1S3B1B8 (protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MCNGHHR LF+G   PYQTSVPENG ASVVDNLRGRLEETE RLAQVRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of HG10016579 vs. ExPASy TrEMBL
Match: A0A6J1GF20 (protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.5e-36
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREVELSRLLE 60
          MCNGHHRSLF+G +SP QTSVPEN GDASVVDNLRGRL ETESRLAQVRARE  LSRLLE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 61 EMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          EMKR+VSVMEILENYLKR+YSDRQEYVVRLL+PVS K
Sbjct: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 97

[Close]

BLAST of HG10016579 vs. ExPASy TrEMBL
Match: A0A6J1IV54 (protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 9.4e-36
Identity = 81/96 (84.38%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MCNGHHRSLF+G +SP QTSVPENGDASVVDNLRGRL ETESRLAQVRARE  LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR+VSVMEIL+NYLKR+Y DRQEYVVRLL+P+S K
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96

[Close]

BLAST of HG10016579 vs. TAIR 10
Match: AT5G65495.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 3.9e-18
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEE 60
          MC GH++SL     S  +    +  D SVVD+LR RL ETE+RL + RARE ELSR LE 
Sbjct: 1  MCYGHNQSL--SSRSSLRRRSHDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK 97
          MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

The following BLAST results are available for this feature:

BLAST of HG10016579 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657944.1	2.7e-37	89.58	protein SKIP34 [Cucumis sativus]	[more]
XP_008440533.1	6.0e-37	89.58	PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis m...	[more]
XP_023544310.1	5.1e-36	86.46	protein SKIP34 [Cucurbita pepo subsp. pepo]	[more]
XP_022950522.1	1.1e-35	87.63	protein SKIP34 [Cucurbita moschata]	[more]
XP_022978829.1	1.9e-35	84.38	protein SKIP34 [Cucurbita maxima]	[more]

BLAST of HG10016579 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWU7	5.5e-17	52.08	Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1	[more]

BLAST of HG10016579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIR5	1.3e-37	89.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1	[more]
A0A5D3CN14	2.9e-37	89.58	Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00330...	[more]
A0A1S3B1B8	2.9e-37	89.58	protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1	[more]
A0A6J1GF20	5.5e-36	87.63	protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1	[more]
A0A6J1IV54	9.4e-36	84.38	protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1	[more]

BLAST of HG10016579 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65495.1	3.9e-18	52.08	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016579.1	HG10016579.1	mRNA