HG10016508 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016508
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 5531212 .. 5531427 (+)
RNA-Seq Expression	HG10016508
Synteny	HG10016508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCATAGGAGCTAGCTGTGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTACAGAGGATGGAGCAGGAGAGATCTGGCCGGAGAGAGGACTCCGTCAAACCTCCCAAAACTGCCCATCACAGCGGCCCCATCGCCGGCAAATCCAGTAAAAAAGTCCATCCGGGTACCATATTTGGGGTTCCGGCGACCTGTAATTCTTGA

mRNA sequence

ATGTCGTCCATAGGAGCTAGCTGTGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTACAGAGGATGGAGCAGGAGAGATCTGGCCGGAGAGAGGACTCCGTCAAACCTCCCAAAACTGCCCATCACAGCGGCCCCATCGCCGGCAAATCCAGTAAAAAAGTCCATCCGGGTACCATATTTGGGGTTCCGGCGACCTGTAATTCTTGA

Coding sequence (CDS)

ATGTCGTCCATAGGAGCTAGCTGTGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTACAGAGGATGGAGCAGGAGAGATCTGGCCGGAGAGAGGACTCCGTCAAACCTCCCAAAACTGCCCATCACAGCGGCCCCATCGCCGGCAAATCCAGTAAAAAAGTCCATCCGGGTACCATATTTGGGGTTCCGGCGACCTGTAATTCTTGA

Protein sequence

MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHSGPIAGKSSKKVHPGTIFGVPATCNS

Homology

[Close]

BLAST of HG10016508 vs. NCBI nr
Match: KGN48780.1 (hypothetical protein Csa_002943 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 9.7e-24
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHH-SGPIAGKSSKKVHP 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKT+HH +G IAGKSSKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFGVPATCNS 72
          GT+FG+ AT NS
Sbjct: 61 GTLFGLQATSNS 72

[Close]

BLAST of HG10016508 vs. NCBI nr
Match: KAA0036273.1 (hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667.1 hypothetical protein E5676_scaffold255G002550 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRRED--SVKPPKTAHH-SGPIAGKSSKKV 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRRED  SVKPPKTAHH  G IAGKSSKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTIFGVPATCNS 72
          HPGT+FGVP T NS
Sbjct: 61 HPGTVFGVPPTSNS 74

[Close]

BLAST of HG10016508 vs. NCBI nr
Match: KAG6594855.1 (hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-19
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHSGPIAGKSSKKVHPG 60
          MSSIGASCARVYVMKKK EEKLQRMEQE++GRRED VKP KTAHH G  AG + KKVHPG
Sbjct: 1  MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHHGGAFAGITCKKVHPG 60

Query: 61 TIFGVPAT 69
          T+  VPA+
Sbjct: 61 TVISVPAS 68

[Close]

BLAST of HG10016508 vs. NCBI nr
Match: KAG6604014.1 (hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 6.1e-18
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHH--SGPIAGKSSKKVH 60
          MSS+GA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK+AHH   G IAGK+ KKVH
Sbjct: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60

Query: 61 PGTIFGVPATCNS 72
          PG +F V A  NS
Sbjct: 61 PGNVFAVSANSNS 73

[Close]

BLAST of HG10016508 vs. NCBI nr
Match: KAF3969578.1 (hypothetical protein CMV_006642 [Castanea mollissima])

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHSGPIAGKSSKKVHPG 60
          MSSI  SCA VYVMKK+ +EKL+RME+ER+ R E S +  K    SG   G+ SKKVHPG
Sbjct: 1  MSSIAFSCAEVYVMKKRQKEKLKRMEEERANRGESSEEERKV---SGSTLGR-SKKVHPG 56

[Close]

BLAST of HG10016508 vs. ExPASy TrEMBL
Match: A0A0A0KGB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.7e-24
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHH-SGPIAGKSSKKVHP 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKT+HH +G IAGKSSKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFGVPATCNS 72
          GT+FG+ AT NS
Sbjct: 61 GTLFGLQATSNS 72

[Close]

BLAST of HG10016508 vs. ExPASy TrEMBL
Match: A0A5A7T065 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002550 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRRED--SVKPPKTAHH-SGPIAGKSSKKV 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRRED  SVKPPKTAHH  G IAGKSSKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTIFGVPATCNS 72
          HPGT+FGVP T NS
Sbjct: 61 HPGTVFGVPPTSNS 74

[Close]

BLAST of HG10016508 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHSGPIAGKSSKKVHPG 60
          MSSIGASCA +YVM+K+ +EKL+RME+ER  + E SV+  K    SG   G+ SKKVHPG
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKV---SGSTIGR-SKKVHPG 56

[Close]

BLAST of HG10016508 vs. ExPASy TrEMBL
Match: A0A2P5BZF9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-04
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHSGPIAGK--SSKKVH 60
          MSSIGASCA VYVM+K+ +EK++RME+ER+ R E        +  SG  +     SKKVH
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGGSGGASNTFGRSKKVH 60

Query: 61 PGTIFGVPAT 69
          PG   G  +T
Sbjct: 61 PGKFPGAEST 70

[Close]

BLAST of HG10016508 vs. ExPASy TrEMBL
Match: A0A7N2M0Y4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-04
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHSGPIAGKSSKKVHPG 60
          MSSIG +CA VYVMKK+ +EKL+RME+ER+   E S +  K    SG   G+ SKKVHPG
Sbjct: 1  MSSIGFTCAEVYVMKKRQKEKLKRMEEERAKIGESSEEERKV---SGSTLGR-SKKVHPG 56

The following BLAST results are available for this feature:

BLAST of HG10016508 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48780.1	9.7e-24	87.50	hypothetical protein Csa_002943 [Cucumis sativus]	[more]
KAA0036273.1	2.8e-23	87.84	hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667...	[more]
KAG6594855.1	2.5e-19	77.94	hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604014.1	6.1e-18	71.23	hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3969578.1	2.2e-04	58.33	hypothetical protein CMV_006642 [Castanea mollissima]	[more]

BLAST of HG10016508 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10016508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGB8	4.7e-24	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1	[more]
A0A5A7T065	1.4e-23	87.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2N9EUS9	1.7e-05	58.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1	[more]
A0A2P5BZF9	3.1e-04	48.57	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV...	[more]
A0A7N2M0Y4	7.0e-04	56.67	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of HG10016508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..71
None	No IPR available	PANTHER	PTHR34950	OS04G0457400 PROTEIN	coord: 1..64
None	No IPR available	PANTHER	PTHR34950:SF2	BNAC01G00560D PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016508.1	HG10016508.1	mRNA