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HG10016507 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACGATCTTCGGCTTGAGACCTAACGCCGACAAGTGCGTAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCGGCGATTCGATTCTCCAATAAGGTCACCTCGAGTTTTGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGCCTTGATAATTGGTTGAAACTCTGTTTTGCTACCTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCACAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGATGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAGGGCGAAAAACCAATTTTATTTTGTTCATCACAGAATAGAATTAAATAACATAGAATGTTGATTTTCTGTAGATTAGCTAGAGAAATATTGTTATCCCCCTTCATTGACGAGCAATAGCGTTAGGAAACAGCTCGTTTCTGGTTCGATTGATCTGTAGCGAGATAAATCGTGTATGTTTCTCTTTACTTGCAATTACGCAAACCAACTGTTTGATGCTTTGTTTGCATGATTGCTTCCTACTTTTCCTGGTTATTCGTCAAACGAATCATTAATTCTGGGGACAGCCAATTTACATCTTGACGGGGACCTTTGTTCCCAATAACACAATGTAATCCGCTATGAAATCATTCAAATCACAACAACTTTTCTCCATCAAGAAGTTTACTTGGGTTAATCTCAAAAGATCTATTAAAAAAATTTAAGATATTAGTTAGTTAGATTAGATGATCTATTAGTCTCTTTTGATGGGTGCTTGTTGTCTCTGTAGGGCCAGGAGTTATGGTACAAACTTAA ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACGATCTTCGGCTTGAGACCTAACGCCGACAAGTGCGTAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCGGCGATTCGATTCTCCAATAAGGTCACCTCGAGTTTTGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGCCTTGATAATTGGTTGAAACTCTGTTTTGCTACCTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCACAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGATGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGGCCAGGAGTTATGGTACAAACTTAA ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACGATCTTCGGCTTGAGACCTAACGCCGACAAGTGCGTAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCGGCGATTCGATTCTCCAATAAGGTCACCTCGAGTTTTGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGCCTTGATAATTGGTTGAAACTCTGTTTTGCTACCTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCACAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGATGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGGCCAGGAGTTATGGTACAAACTTAA MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGPGVMVQT Homology
BLAST of HG10016507 vs. NCBI nr
Match: XP_038883588.1 (E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]) HSP 1 Score: 307.0 bits (785), Expect = 9.7e-80 Identity = 149/154 (96.75%), Postives = 151/154 (98.05%), Query Frame = 0
BLAST of HG10016507 vs. NCBI nr
Match: KAA0036272.1 (putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa]) HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79 Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of HG10016507 vs. NCBI nr
Match: XP_008440648.1 (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]) HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78 Identity = 148/153 (96.73%), Postives = 149/153 (97.39%), Query Frame = 0
BLAST of HG10016507 vs. NCBI nr
Match: XP_022963436.1 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata] >XP_023517189.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7026818.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77 Identity = 145/157 (92.36%), Postives = 149/157 (94.90%), Query Frame = 0
BLAST of HG10016507 vs. NCBI nr
Match: XP_022132528.1 (E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]) HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76 Identity = 143/157 (91.08%), Postives = 149/157 (94.90%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2) HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14 Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.8e-13 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.4e-11 Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy Swiss-Prot
Match: Q0VD51 (E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 9.9e-11 Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy TrEMBL
Match: A0A5A7SYH1 (Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002540 PE=4 SV=1) HSP 1 Score: 305.4 bits (781), Expect = 1.4e-79 Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy TrEMBL
Match: A0A0A0KM08 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 6.8e-79 Identity = 147/157 (93.63%), Postives = 150/157 (95.54%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy TrEMBL
Match: A0A1S3B160 (probable E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo OX=3656 GN=LOC103485001 PE=4 SV=1) HSP 1 Score: 302.8 bits (774), Expect = 8.8e-79 Identity = 148/153 (96.73%), Postives = 149/153 (97.39%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy TrEMBL
Match: A0A6J1HG49 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463642 PE=4 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 7.5e-78 Identity = 145/157 (92.36%), Postives = 149/157 (94.90%), Query Frame = 0
BLAST of HG10016507 vs. ExPASy TrEMBL
Match: A0A6J1BWI1 (E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC111005363 PE=4 SV=1) HSP 1 Score: 297.0 bits (759), Expect = 4.8e-77 Identity = 143/157 (91.08%), Postives = 149/157 (94.90%), Query Frame = 0
BLAST of HG10016507 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B ) HSP 1 Score: 80.9 bits (198), Expect = 1.0e-15 Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 0
BLAST of HG10016507 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A ) HSP 1 Score: 76.6 bits (187), Expect = 2.0e-14 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of HG10016507 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein ) HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12 Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 0
BLAST of HG10016507 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12 Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 0
BLAST of HG10016507 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 ) HSP 1 Score: 69.3 bits (168), Expect = 3.2e-12 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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