HG10016369 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016369
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type domain-containing protein
Location	Chr03: 4517657 .. 4518226 (-)
RNA-Seq Expression	HG10016369
Synteny	HG10016369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCAGTGGACGATCTCGGTTACAGTTACAGACGCCTTCTTAAAGATTCCTTATTCGAACATCCATTTGGAAGCCGAGAAAGAATCTTTACCATATGTGCGACTTCTGTCATTGCAGCCGTGTTTGTAATCTCTTTGTTCATCACCCTCTTCACCTGCTTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATCTACCAATCAACTCACTGCCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTCCATCGTCGTCTTATTGTTTTATGTCATCGTTTGAGTCCAGGAACTGCGTCATATGTTTGGCGGAGTTCGAGCACGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGCGTTTCATAAAGGGTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCATACAATCGAGGAGATTGGGACCGTGAGGAGACCAGTTTGTTCAAATTATTGGGCCCGAAATCCGGCCTTCATATTGGCCTTCGGCCTTGGTAGTAATGTCCCATTGCCCTCTCAACTGTAA

mRNA sequence

ATGAATTCAGTGGACGATCTCGGTTACAGTTACAGACGCCTTCTTAAAGATTCCTTATTCGAACATCCATTTGGAAGCCGAGAAAGAATCTTTACCATATGTGCGACTTCTGTCATTGCAGCCGTGTTTGTAATCTCTTTGTTCATCACCCTCTTCACCTGCTTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATCTACCAATCAACTCACTGCCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTCCATCGTCGTCTTATTGTTTTATGTCATCGTTTGAGTCCAGGAACTGCGTCATATGTTTGGCGGAGTTCGAGCACGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGCGTTTCATAAAGGGTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCATACAATCGAGGAGATTGGGACCGTGAGGAGACCAGTTTGTTCAAATTATTGGGCCCGAAATCCGGCCTTCATATTGGCCTTCGGCCTTGGTAGTAATGTCCCATTGCCCTCTCAACTGTAA

Coding sequence (CDS)

ATGAATTCAGTGGACGATCTCGGTTACAGTTACAGACGCCTTCTTAAAGATTCCTTATTCGAACATCCATTTGGAAGCCGAGAAAGAATCTTTACCATATGTGCGACTTCTGTCATTGCAGCCGTGTTTGTAATCTCTTTGTTCATCACCCTCTTCACCTGCTTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATCTACCAATCAACTCACTGCCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTCCATCGTCGTCTTATTGTTTTATGTCATCGTTTGAGTCCAGGAACTGCGTCATATGTTTGGCGGAGTTCGAGCACGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGCGTTTCATAAAGGGTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCATACAATCGAGGAGATTGGGACCGTGAGGAGACCAGTTTGTTCAAATTATTGGGCCCGAAATCCGGCCTTCATATTGGCCTTCGGCCTTGGTAGTAATGTCCCATTGCCCTCTCAACTGTAA

Protein sequence

MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLNSPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFGLGSNVPLPSQL

Homology

[Close]

BLAST of HG10016369 vs. NCBI nr
Match: XP_038881295.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 7.3e-95
Identity = 169/189 (89.42%), Postives = 179/189 (94.71%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLN 60
           MNSVD LGYSYRRLLKDSLFEHPFG+RERI TICATSVIAA+FVISLFI+LFTCFR QLN
Sbjct: 1   MNSVDYLGYSYRRLLKDSLFEHPFGNRERIVTICATSVIAAMFVISLFISLFTCFRHQLN 60

Query: 61  SPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRV 120
           SPSSKPP STS++QLT MPVYIYGD+SSSPSSSYCF SSFE RNCVICLAEF+HGDELRV
Sbjct: 61  SPSSKPPPSTSSSQLTTMPVYIYGDVSSSPSSSYCFTSSFEPRNCVICLAEFKHGDELRV 120

Query: 121 LPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFGLG 180
           LPNCKHAFHKGCIDQWL L+SL CPLCRDHT EEIGT+RRP+CSNYWARNPAFILAFGLG
Sbjct: 121 LPNCKHAFHKGCIDQWLLLRSLLCPLCRDHTTEEIGTMRRPICSNYWARNPAFILAFGLG 180

Query: 181 SNVPLPSQL 190
           SNVPLPSQL
Sbjct: 181 SNVPLPSQL 189

[Close]

BLAST of HG10016369 vs. NCBI nr
Match: XP_011658497.1 (E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 6.2e-86
Identity = 160/190 (84.21%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLN 60
           MNSVDDLGYS RRLLKDSLFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQLN
Sbjct: 1   MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 60

Query: 61  SPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELR 120
           SPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESR CVICLAEFE+GDELR
Sbjct: 61  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRTCVICLAEFEYGDELR 120

Query: 121 VLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFGL 180
           VLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRPVCSNYW+RNPAFILAFGL
Sbjct: 121 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 180

Query: 181 GSNVPLPSQL 190
           GSN PLPSQL
Sbjct: 181 GSNAPLPSQL 189

[Close]

BLAST of HG10016369 vs. NCBI nr
Match: KAA0025673.1 (RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa] >TYK12545.1 RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.1e-85
Identity = 161/191 (84.29%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKD-SLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQL 60
           MNSVDDLGYS RRLLKD SLFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQL
Sbjct: 1   MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 60

Query: 61  NSPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESRNCVICLAEFE+GDEL
Sbjct: 61  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRNCVICLAEFEYGDEL 120

Query: 121 RVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFG 180
           RVLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRP+CSNYWARNPAFILAFG
Sbjct: 121 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 180

Query: 181 LGSNVPLPSQL 190
           LGSN PLPSQL
Sbjct: 181 LGSNAPLPSQL 190

[Close]

BLAST of HG10016369 vs. NCBI nr
Match: XP_008440820.1 (PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo])

HSP 1 Score: 325.5 bits (833), Expect = 3.1e-85
Identity = 161/191 (84.29%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKD-SLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQL 60
           MNSVDDLGYS RRLLKD SLFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  NSPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESRNCVICLAEFE+GDEL
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRNCVICLAEFEYGDEL 130

Query: 121 RVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFG 180
           RVLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRP+CSNYWARNPAFILAFG
Sbjct: 131 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 190

Query: 181 LGSNVPLPSQL 190
           LGSN PLPSQL
Sbjct: 191 LGSNAPLPSQL 200

[Close]

BLAST of HG10016369 vs. NCBI nr
Match: KAG6603909.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.4 bits (742), Expect = 1.1e-74
Identity = 139/191 (72.77%), Postives = 158/191 (82.72%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLN 60
           MNS    GY+YRRLLKDSL + PFG  ER+ TIC  S IAA FV+SLFI+LFTCFRRQL 
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCF--MSSFESRNCVICLAEFEHGDEL 120
           S SSKPPSST + QL++MPVYIYGD     S+ YCF   SSFE+RNCVICLAEFE GDEL
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGD-----SAPYCFTSSSSFEARNCVICLAEFELGDEL 120

Query: 121 RVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFG 180
           RVLPNCKHAFHKGCIDQWLPL+SL CPLCR+ +I+EIGT+R+PVC+N+WARNPAF+LAF 
Sbjct: 121 RVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFA 180

Query: 181 LGSNVPLPSQL 190
             SN PLPSQL
Sbjct: 181 SASNAPLPSQL 186

[Close]

BLAST of HG10016369 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-12
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 55  FRRQLNSPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEH 114
           ++RQL        S      + A+PV++Y ++  +           E  +C +CL EF  
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK----------EPFDCAVCLCEFSE 163

Query: 115 GDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCR 149
            D+LR+LPNC HAFH  CID WL L +  CPLCR
Sbjct: 164 DDKLRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]

BLAST of HG10016369 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 63  SSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLP 122
           SS  P     + +  +P+++Y   + +   +    S+   R+C +CL EFE GD +R LP
Sbjct: 114 SSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLP 173

Query: 123 NCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTV 159
            C HAFH  CID+WL     +CPLCR   +   G +
Sbjct: 174 LCFHAFHLECIDEWL-RSHPNCPLCRTAILGSAGVL 208

[Close]

BLAST of HG10016369 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 104 NCVICLAEFEHGDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRP 162
           +C +CL EFE  D+LR+LP C HAFH  CID WL L    CPLCR   + ++ + + P
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP 189

[Close]

BLAST of HG10016369 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 36/100 (36.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 60  NSPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELR 119
           ++ SS   S      + ++P++ +  L  S           +  +C +CL++FE  + LR
Sbjct: 88  STASSDRFSGLDKTAIESLPLFRFSALKGSK----------QGLDCSVCLSKFESVEILR 147

Query: 120 VLPNCKHAFHKGCIDQWLPLKSLHCPLCRDH-TIEEIGTV 159
           +LP C+HAFH GCIDQWL  +   CPLCRD  ++EE  +V
Sbjct: 148 LLPKCRHAFHIGCIDQWLE-QHATCPLCRDRVSMEEDSSV 176

[Close]

BLAST of HG10016369 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 68  SSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLPNCKHA 127
           S      + A+PV++YG+++ S    +         +C +CL EF   D+LR+LP C HA
Sbjct: 179 SGLDQTAIDALPVFLYGNVTISLEQPF---------DCAVCLNEFSDTDKLRLLPVCSHA 238

Query: 128 FHKGCIDQWLPLKSLHCPLCR 149
           FH  CID WL L +  CPLCR
Sbjct: 239 FHLHCIDTWL-LSNSTCPLCR 249

[Close]

BLAST of HG10016369 vs. ExPASy TrEMBL
Match: A0A0A0KKP7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G505940 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.0e-86
Identity = 160/190 (84.21%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLN 60
           MNSVDDLGYS RRLLKDSLFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQLN
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELR 120
           SPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESR CVICLAEFE+GDELR
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRTCVICLAEFEYGDELR 143

Query: 121 VLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFGL 180
           VLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRPVCSNYW+RNPAFILAFGL
Sbjct: 144 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 203

Query: 181 GSNVPLPSQL 190
           GSN PLPSQL
Sbjct: 204 GSNAPLPSQL 212

[Close]

BLAST of HG10016369 vs. ExPASy TrEMBL
Match: A0A5D3CLV8 (RING-H2 finger protein ATL72-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001270 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 161/191 (84.29%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKD-SLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQL 60
           MNSVDDLGYS RRLLKD SLFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQL
Sbjct: 1   MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 60

Query: 61  NSPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESRNCVICLAEFE+GDEL
Sbjct: 61  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRNCVICLAEFEYGDEL 120

Query: 121 RVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFG 180
           RVLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRP+CSNYWARNPAFILAFG
Sbjct: 121 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 180

Query: 181 LGSNVPLPSQL 190
           LGSN PLPSQL
Sbjct: 181 LGSNAPLPSQL 190

[Close]

BLAST of HG10016369 vs. ExPASy TrEMBL
Match: A0A1S3B2S4 (RING-H2 finger protein ATL72-like OS=Cucumis melo OX=3656 GN=LOC103485128 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 161/191 (84.29%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKD-SLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQL 60
           MNSVDDLGYS RRLLKD SLFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  NSPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESRNCVICLAEFE+GDEL
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRNCVICLAEFEYGDEL 130

Query: 121 RVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFG 180
           RVLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRP+CSNYWARNPAFILAFG
Sbjct: 131 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 190

Query: 181 LGSNVPLPSQL 190
           LGSN PLPSQL
Sbjct: 191 LGSNAPLPSQL 200

[Close]

BLAST of HG10016369 vs. ExPASy TrEMBL
Match: A0A6J1GEN4 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111453465 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.0e-75
Identity = 139/191 (72.77%), Postives = 158/191 (82.72%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLN 60
           MNS    GY+YRRLLKDSL + PFG  ER+ TIC  S IAA FV+SLFI+LFTCFRRQL 
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCF--MSSFESRNCVICLAEFEHGDEL 120
           S SSKPPSST + QL++MPVYIYGD     S+ YCF   SSFE+RNCVICLAEFE GDEL
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGD-----SAPYCFTSSSSFEARNCVICLAEFELGDEL 120

Query: 121 RVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFG 180
           RVLPNCKHAFHKGCIDQWLPL+SL CPLCR+ +I+EIGT+R+PVC+N+WARNPAF+LAF 
Sbjct: 121 RVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFA 180

Query: 181 LGSNVPLPSQL 190
             SN PLPSQL
Sbjct: 181 PASNAPLPSQL 186

[Close]

BLAST of HG10016369 vs. ExPASy TrEMBL
Match: A0A6J1IJG4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111477647 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.3e-73
Identity = 137/190 (72.11%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLN 60
           MNS    GY+YRRLLKDSL + PFG  ER+ TIC  S IAA FV+SLFI+LFTCFRRQL 
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCF-MSSFESRNCVICLAEFEHGDELR 120
           S SSKPPSST + QL++MPVYIYGD     S+ YCF  SSFE RNCVICL EFE GDELR
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGD-----SAPYCFTSSSFEVRNCVICLGEFELGDELR 120

Query: 121 VLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFGL 180
           VLPNC HAFHKGCIDQWLPL+SL CPLCR+ + +EIGT+R+PVC+NYWARNPAF+LAF  
Sbjct: 121 VLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAFAP 180

Query: 181 GSNVPLPSQL 190
            SN PLPSQL
Sbjct: 181 ASNAPLPSQL 185

[Close]

BLAST of HG10016369 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-13
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 55  FRRQLNSPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEH 114
           ++RQL        S      + A+PV++Y ++  +           E  +C +CL EF  
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK----------EPFDCAVCLCEFSE 163

Query: 115 GDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCR 149
            D+LR+LPNC HAFH  CID WL L +  CPLCR
Sbjct: 164 DDKLRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]

BLAST of HG10016369 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 7.5e-13
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 63  SSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLP 122
           SS  P     + +  +P+++Y   + +   +    S+   R+C +CL EFE GD +R LP
Sbjct: 114 SSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLP 173

Query: 123 NCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTV 159
            C HAFH  CID+WL     +CPLCR   +   G +
Sbjct: 174 LCFHAFHLECIDEWL-RSHPNCPLCRTAILGSAGVL 208

[Close]

BLAST of HG10016369 vs. TAIR 10
Match: AT3G18930.2 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 7.5e-13
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 63  SSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLP 122
           SS  P     + +  +P+++Y   + +   +    S+   R+C +CL EFE GD +R LP
Sbjct: 114 SSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLP 173

Query: 123 NCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTV 159
            C HAFH  CID+WL     +CPLCR   +   G +
Sbjct: 174 LCFHAFHLECIDEWL-RSHPNCPLCRTAILGSAGVL 208

[Close]

BLAST of HG10016369 vs. TAIR 10
Match: AT4G30400.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-12
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 104 NCVICLAEFEHGDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRP 162
           +C +CL EFE  D+LR+LP C HAFH  CID WL L    CPLCR   + ++ + + P
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP 189

[Close]

BLAST of HG10016369 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12
Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 0


Query: 22  HPFGSRERIFTICATSVIAAVFVISLFITLFT-CFRRQLNSPSSKPPSSTSTNQ------ 81
           H   + +RI  I A+S+I  +F+++L +  F   +RR+ +  +S+  S            
Sbjct: 116 HHDDNLKRILIISASSIITTLFLLTLLVLCFKFYYRRRRSITTSRRWSMEEARNWDFDGP 175

Query: 82  ---LTAMPVYIYGDLSSSP----SSSYCFMSS----FESRNCVICLAEFEHGDELRVLPN 141
              +   P++    +  +P    S   C  S      E  +C +CL+EFE  + LR+LP 
Sbjct: 176 APVIVDHPIWHIRTIGLNPTVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPK 235

Query: 142 CKHAFHKGCIDQWLPLKSLHCPLCRDHTIE 154
           CKHAFH  CID WL     +CPLCR   +E
Sbjct: 236 CKHAFHLYCIDTWL-RSHTNCPLCRAPIVE 264

The following BLAST results are available for this feature:

BLAST of HG10016369 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881295.1	7.3e-95	89.42	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]
XP_011658497.1	6.2e-86	84.21	E3 ubiquitin-protein ligase RHA2B [Cucumis sativus]	[more]
KAA0025673.1	3.1e-85	84.29	RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa] >TYK12545.1 RING-H2...	[more]
XP_008440820.1	3.1e-85	84.29	PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo]	[more]
KAG6603909.1	1.1e-74	72.77	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of HG10016369 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW38	6.2e-12	38.30	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q67YI6	1.1e-11	35.42	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
Q940Q4	3.1e-11	48.28	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]
Q5XF85	1.2e-10	36.00	E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ...	[more]
Q7X843	1.2e-10	40.74	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2	[more]

BLAST of HG10016369 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKP7	3.0e-86	84.21	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G505940 P...	[more]
A0A5D3CLV8	1.5e-85	84.29	RING-H2 finger protein ATL72-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3B2S4	1.5e-85	84.29	RING-H2 finger protein ATL72-like OS=Cucumis melo OX=3656 GN=LOC103485128 PE=4 S...	[more]
A0A6J1GEN4	7.0e-75	72.77	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111453465 ...	[more]
A0A6J1IJG4	1.3e-73	72.11	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111477647 PE...	[more]

BLAST of HG10016369 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23980.1	4.4e-13	38.30	RING/U-box superfamily protein	[more]
AT3G18930.1	7.5e-13	35.42	RING/U-box superfamily protein	[more]
AT3G18930.2	7.5e-13	35.42	RING/U-box superfamily protein	[more]
AT4G30400.1	2.2e-12	48.28	RING/U-box superfamily protein	[more]
AT4G33565.1	3.7e-12	31.33	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 105..147 e-value: 3.6E-7 score: 39.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 104..148 e-value: 5.7E-12 score: 45.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 105..148 score: 12.194218
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 56..152 e-value: 2.1E-18 score: 67.8
None	No IPR available	PANTHER	PTHR45798:SF35	OS11G0149500 PROTEIN	coord: 14..186
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 14..186
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 104..148 e-value: 1.1659E-15 score: 65.7109
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 104..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016369.1	HG10016369.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane