HG10016317 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016317
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr03: 4167819 .. 4169210 (+)
RNA-Seq Expression	HG10016317
Synteny	HG10016317

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAATTATCGCCATCATTTCGTTCAGCTCTCTCCACCGTCGTCGTTAACAAACCGCCCCATTCTCCGGCGGCGCCTCCGCTTTCATCCAAGAAACCAACCCCCAAAGTTTCCAGGAAAACCCCATCGGGTAAGAGCTCCGGCCACCCGGAAAAGCCTAAACTCCCAACGCTGTTCAAATCGGCTAGTCTCGCAGATGCCAAGAAGATCTACACCTCCTTCATATCCACTACAAAAGCCCCGCTCGACGTTCGAATCCATAATTCCCTCCTTCAGTCTTACACTTCAATCGCTACACTCAATGACTCCATCTCTTTCCTCCGCCACATGTCCAAAGTTCAACCTTCCTTCTCGCCCGATCAATCGACCTTCCATGTCTTACTCTCCACCTCCGGGAATGGTCCTGATTTCTCTCTCGCCTCGGTTCGGCAAATTCTCAATTTCATGGTCACTAATGGCTTCGATCCTGACAAGGTAACCACTGATCTTGCTGTGCGTTCGCTTTGTTCGGTAGGTCTGGTTGATGAAGCTGTAGAATTAGTTAAGGAATTATCGCAAAAACACTCGCCTCCTGATTCGTATACATATAATCATCTCGTTAAGCAACTTTGCAAGTCCAGAGCTCTGTCTACGGTCTATAATTTTATTGTTGAAATGCGTAGTAGCTGTGGTGCGAAGCCCGATCTTGTTACTTATACAATCTTGATAGATAATGTGTGTAATAGCAAGAATCTACGTGAGGCTATGAGGTTGGTAAGTCTGCTGTATAAGGAGGGTTTTAAGCCGGATTGCTTTGTTTATAACACAATTATGAAGGGTTATTGTATGATTGGCAGGGGCAGCGAGGCAATTGGAGTCTATAAGAAAATGAAGGAGGTGGGATTGGAGCCTGATGTTGTAAGTTTTAATACGTTGATTTTTGGGTTATCAAAGTCAGGGCGAGTTAAGGAAGCCAGAAAGTTCTTGGACATTATGGCAGAGATGGGTCATTTCCCTGATGCAGTTACTTACACTTCATTGATGAATGGAATGTGTTGTGAGGGTGATGCTTTGGGAGCACTGTCATTGCTTGAGGAGATGGAGGCAAAGGGTTGCAGCCCCAATTCGTGCACATATAATACGTTGCTCCATGGGTTGTCAAAGTCTAGGCTTTTGGATAGAGGGATTGAATTGTATGGTTTGATGAAGTCTAGTGATATGAAGCTTGAAACAGCTTCCTATGCTACTTTTGTGAGGGCGCTTTGCAGGAGTGGTAGAATTGCTGAAGCCTATGAAGTGTTTGATTATGCAGTTGAGAGTAAAAGTCTGACTGATGTTGCTGCATATTCAACGTTAGAGATTACATTGAAGTCTCTGAAGAAAGCAAGGGAGCAAGCCCATGCTATATAA

mRNA sequence

ATGGGCAAATTATCGCCATCATTTCGTTCAGCTCTCTCCACCGTCGTCGTTAACAAACCGCCCCATTCTCCGGCGGCGCCTCCGCTTTCATCCAAGAAACCAACCCCCAAAGTTTCCAGGAAAACCCCATCGGGTAAGAGCTCCGGCCACCCGGAAAAGCCTAAACTCCCAACGCTGTTCAAATCGGCTAGTCTCGCAGATGCCAAGAAGATCTACACCTCCTTCATATCCACTACAAAAGCCCCGCTCGACGTTCGAATCCATAATTCCCTCCTTCAGTCTTACACTTCAATCGCTACACTCAATGACTCCATCTCTTTCCTCCGCCACATGTCCAAAGTTCAACCTTCCTTCTCGCCCGATCAATCGACCTTCCATGTCTTACTCTCCACCTCCGGGAATGGTCCTGATTTCTCTCTCGCCTCGGTTCGGCAAATTCTCAATTTCATGGTCACTAATGGCTTCGATCCTGACAAGGTAACCACTGATCTTGCTGTGCGTTCGCTTTGTTCGGTAGGTCTGGTTGATGAAGCTGTAGAATTAGTTAAGGAATTATCGCAAAAACACTCGCCTCCTGATTCGTATACATATAATCATCTCGTTAAGCAACTTTGCAAGTCCAGAGCTCTGTCTACGGTCTATAATTTTATTGTTGAAATGCGTAGTAGCTGTGGTGCGAAGCCCGATCTTGTTACTTATACAATCTTGATAGATAATGTGTGTAATAGCAAGAATCTACGTGAGGCTATGAGGTTGGTAAGTCTGCTGTATAAGGAGGGTTTTAAGCCGGATTGCTTTGTTTATAACACAATTATGAAGGGTTATTGTATGATTGGCAGGGGCAGCGAGGCAATTGGAGTCTATAAGAAAATGAAGGAGGTGGGATTGGAGCCTGATGTTGTAAGTTTTAATACGTTGATTTTTGGGTTATCAAAGTCAGGGCGAGTTAAGGAAGCCAGAAAGTTCTTGGACATTATGGCAGAGATGGGTCATTTCCCTGATGCAGTTACTTACACTTCATTGATGAATGGAATGTGTTGTGAGGGTGATGCTTTGGGAGCACTGTCATTGCTTGAGGAGATGGAGGCAAAGGGTTGCAGCCCCAATTCGTGCACATATAATACGTTGCTCCATGGGTTGTCAAAGTCTAGGCTTTTGGATAGAGGGATTGAATTGTATGGTTTGATGAAGTCTAGTGATATGAAGCTTGAAACAGCTTCCTATGCTACTTTTGTGAGGGCGCTTTGCAGGAGTGGTAGAATTGCTGAAGCCTATGAAGTGTTTGATTATGCAGTTGAGAGTAAAAGTCTGACTGATGTTGCTGCATATTCAACGTTAGAGATTACATTGAAGTCTCTGAAGAAAGCAAGGGAGCAAGCCCATGCTATATAA

Coding sequence (CDS)

ATGGGCAAATTATCGCCATCATTTCGTTCAGCTCTCTCCACCGTCGTCGTTAACAAACCGCCCCATTCTCCGGCGGCGCCTCCGCTTTCATCCAAGAAACCAACCCCCAAAGTTTCCAGGAAAACCCCATCGGGTAAGAGCTCCGGCCACCCGGAAAAGCCTAAACTCCCAACGCTGTTCAAATCGGCTAGTCTCGCAGATGCCAAGAAGATCTACACCTCCTTCATATCCACTACAAAAGCCCCGCTCGACGTTCGAATCCATAATTCCCTCCTTCAGTCTTACACTTCAATCGCTACACTCAATGACTCCATCTCTTTCCTCCGCCACATGTCCAAAGTTCAACCTTCCTTCTCGCCCGATCAATCGACCTTCCATGTCTTACTCTCCACCTCCGGGAATGGTCCTGATTTCTCTCTCGCCTCGGTTCGGCAAATTCTCAATTTCATGGTCACTAATGGCTTCGATCCTGACAAGGTAACCACTGATCTTGCTGTGCGTTCGCTTTGTTCGGTAGGTCTGGTTGATGAAGCTGTAGAATTAGTTAAGGAATTATCGCAAAAACACTCGCCTCCTGATTCGTATACATATAATCATCTCGTTAAGCAACTTTGCAAGTCCAGAGCTCTGTCTACGGTCTATAATTTTATTGTTGAAATGCGTAGTAGCTGTGGTGCGAAGCCCGATCTTGTTACTTATACAATCTTGATAGATAATGTGTGTAATAGCAAGAATCTACGTGAGGCTATGAGGTTGGTAAGTCTGCTGTATAAGGAGGGTTTTAAGCCGGATTGCTTTGTTTATAACACAATTATGAAGGGTTATTGTATGATTGGCAGGGGCAGCGAGGCAATTGGAGTCTATAAGAAAATGAAGGAGGTGGGATTGGAGCCTGATGTTGTAAGTTTTAATACGTTGATTTTTGGGTTATCAAAGTCAGGGCGAGTTAAGGAAGCCAGAAAGTTCTTGGACATTATGGCAGAGATGGGTCATTTCCCTGATGCAGTTACTTACACTTCATTGATGAATGGAATGTGTTGTGAGGGTGATGCTTTGGGAGCACTGTCATTGCTTGAGGAGATGGAGGCAAAGGGTTGCAGCCCCAATTCGTGCACATATAATACGTTGCTCCATGGGTTGTCAAAGTCTAGGCTTTTGGATAGAGGGATTGAATTGTATGGTTTGATGAAGTCTAGTGATATGAAGCTTGAAACAGCTTCCTATGCTACTTTTGTGAGGGCGCTTTGCAGGAGTGGTAGAATTGCTGAAGCCTATGAAGTGTTTGATTATGCAGTTGAGAGTAAAAGTCTGACTGATGTTGCTGCATATTCAACGTTAGAGATTACATTGAAGTCTCTGAAGAAAGCAAGGGAGCAAGCCCATGCTATATAA

Protein sequence

MGKLSPSFRSALSTVVVNKPPHSPAAPPLSSKKPTPKVSRKTPSGKSSGHPEKPKLPTLFKSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSGRIAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI

Homology

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BLAST of HG10016317 vs. NCBI nr
Match: XP_038883848.1 (pentatricopeptide repeat-containing protein At2g17670 [Benincasa hispida])

HSP 1 Score: 863.2 bits (2229), Expect = 1.0e-246
Identity = 440/462 (95.24%), Postives = 453/462 (98.05%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPLSSKKPTPKVSRKTPSGKSSGHPEKPKLPTLF 60
           MGKLSPSFRSALSTVVVNKPPHSPAAPPLSSKKPT  VSRK+PSG+SSGHPEKPKLPT+F
Sbjct: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPLSSKKPTQSVSRKSPSGQSSGHPEKPKLPTVF 60

Query: 61  KSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFSP 120
           KSA LADAKK+Y SFISTTKAPLD+R HNSLLQSY SIATLNDSISFLRHMSKVQPSFSP
Sbjct: 61  KSAGLADAKKLYASFISTTKAPLDLRFHNSLLQSYASIATLNDSISFLRHMSKVQPSFSP 120

Query: 121 DQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVE 180
           DQSTFHVLL+TSGN PDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVE
Sbjct: 121 DQSTFHVLLATSGNDPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVE 180

Query: 181 LVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV 240
           LVKELSQKHSPPDSYTYNHLVKQLCKSR LSTVY+FIV+MRSSCGAKPDLVTYTILIDNV
Sbjct: 181 LVKELSQKHSPPDSYTYNHLVKQLCKSRDLSTVYDFIVQMRSSCGAKPDLVTYTILIDNV 240

Query: 241 CNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDV 300
           CNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDV
Sbjct: 241 CNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDV 300

Query: 301 VSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLEE 360
           V+FNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEG+ALGALSLL+E
Sbjct: 301 VTFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGNALGALSLLQE 360

Query: 361 MEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSGR 420
           MEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMK+S+MKLETASYATFVRALCRSGR
Sbjct: 361 MEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKASNMKLETASYATFVRALCRSGR 420

Query: 421 IAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHA 463
           IAEAYEVFDYAVESKSLTDVAAYSTLE TLKSLKKAREQAHA
Sbjct: 421 IAEAYEVFDYAVESKSLTDVAAYSTLESTLKSLKKAREQAHA 462

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BLAST of HG10016317 vs. NCBI nr
Match: XP_004135005.1 (pentatricopeptide repeat-containing protein At2g17670 [Cucumis sativus] >KGN48978.1 hypothetical protein Csa_003999 [Cucumis sativus])

HSP 1 Score: 827.4 bits (2136), Expect = 6.1e-236
Identity = 421/464 (90.73%), Postives = 445/464 (95.91%), Query Frame = 0


Query: 1   MGKLSPSFRSALST-VVVNKPPHSPAAPPLSSKKPTPKVSRKTPSGKSSGHPEKPKLPTL 60
           MGKLSPSFRS LS+  V+NKPPHSPAAPPLSSKK TPK SRKTPSG+SSGHPEKPKLPT+
Sbjct: 1   MGKLSPSFRSILSSNTVINKPPHSPAAPPLSSKKATPKPSRKTPSGQSSGHPEKPKLPTV 60

Query: 61  FKSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFS 120
           FKSASLADAKK+Y+SF+S TKAP ++R+HNSLLQSY SIATLNDSISFLRHMSKVQPSFS
Sbjct: 61  FKSASLADAKKLYSSFVSATKAPFNLRVHNSLLQSYASIATLNDSISFLRHMSKVQPSFS 120

Query: 121 PDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAV 180
           PDQSTFH+LLSTSGN PD +LASV+QILNFMVTNGF+PDKVT DLAVRSLCSVGLVDEAV
Sbjct: 121 PDQSTFHILLSTSGNRPDSTLASVQQILNFMVTNGFNPDKVTADLAVRSLCSVGLVDEAV 180

Query: 181 ELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDN 240
           ELVKELSQKH+PPD YTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDN
Sbjct: 181 ELVKELSQKHTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDN 240

Query: 241 VCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPD 300
           VCNS NLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCM+GRG+EAIGVYKKMKEVGLEPD
Sbjct: 241 VCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPD 300

Query: 301 VVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLE 360
           VV+FNTLIFGLSKSGRVKEAR FLDIMAEMGHFPDAVTYTSLMNGMC EG+ALGALSLL+
Sbjct: 301 VVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNALGALSLLK 360

Query: 361 EMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSG 420
           EMEAKGC+PNSCTYNTLLHGLSKSRLLDRGIELYGLMKS DMKLETASY+TFVRALCRSG
Sbjct: 361 EMEAKGCNPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSCDMKLETASYSTFVRALCRSG 420

Query: 421 RIAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI 464
           RIAEAYEVFDYAVESKSLTDV+AY +LE TLKSLK AREQAHAI
Sbjct: 421 RIAEAYEVFDYAVESKSLTDVSAYLSLESTLKSLKNAREQAHAI 464

[Close]

BLAST of HG10016317 vs. NCBI nr
Match: XP_016899201.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Cucumis melo])

HSP 1 Score: 808.5 bits (2087), Expect = 2.9e-230
Identity = 414/463 (89.42%), Postives = 440/463 (95.03%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPLSSKKPTPKVSRKTPSGKSSGHPEKPKLPTLF 60
           MGKLSPSFRS LST V++KP  SPAAPPLSSKKPTPK SRKTPSG+SSGHP KPKLPT+F
Sbjct: 1   MGKLSPSFRSILSTSVIHKPTLSPAAPPLSSKKPTPKPSRKTPSGQSSGHPVKPKLPTVF 60

Query: 61  KSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFSP 120
           KSASLADAKK+Y+SFIST+KAP ++R+HNSLLQSY SIATLNDSISFLRHMSKVQPSFSP
Sbjct: 61  KSASLADAKKLYSSFISTSKAPFNLRVHNSLLQSYASIATLNDSISFLRHMSKVQPSFSP 120

Query: 121 DQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVE 180
           DQSTFH+LLSTS N PD SLASVR+ILNFMVTNGF+PDKVT DLAVRSLCSVGLVDEAVE
Sbjct: 121 DQSTFHILLSTSENRPDSSLASVRKILNFMVTNGFNPDKVTADLAVRSLCSVGLVDEAVE 180

Query: 181 LVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV 240
           LVKELSQKH+P D YTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV
Sbjct: 181 LVKELSQKHTPLDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV 240

Query: 241 CNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDV 300
           CNS NLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCM+GRG+EAIGVYKKMKEVGLEPD+
Sbjct: 241 CNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPDL 300

Query: 301 VSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLEE 360
           V+FNTLIFGLSKSGRVKEA  FLDIMAEMGHFPD VTYTSLMNGMC EG+ALGALSLL+E
Sbjct: 301 VTFNTLIFGLSKSGRVKEAIDFLDIMAEMGHFPDTVTYTSLMNGMCREGNALGALSLLKE 360

Query: 361 MEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSGR 420
           MEAKGC+PNS TYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLE+ASY+TFVRALCRSGR
Sbjct: 361 MEAKGCNPNSFTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLESASYSTFVRALCRSGR 420

Query: 421 IAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI 464
           IAEAYEVFDYAVESKSLTDV+AY +LE TLKSLK AREQAHA+
Sbjct: 421 IAEAYEVFDYAVESKSLTDVSAYLSLESTLKSLKNAREQAHAV 463

[Close]

BLAST of HG10016317 vs. NCBI nr
Match: XP_022926982.1 (pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata] >XP_022926983.1 pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata] >XP_022926984.1 pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata])

HSP 1 Score: 782.7 bits (2020), Expect = 1.7e-222
Identity = 405/470 (86.17%), Postives = 429/470 (91.28%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPL-------SSKKPTPKVSRKTPSGKSSGHPEK 60
           MGKLSPSFRSA+ST +VNKPPH PAAP L        SKK  PK SR+  S +SS H EK
Sbjct: 1   MGKLSPSFRSAISTPIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60

Query: 61  PKLPTLFKSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSK 120
           PKLPTLFKSASLADAKK+Y+SFI+TTKAPLDVR +NSLLQSY SIA+LNDSISFLRHMSK
Sbjct: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSK 120

Query: 121 VQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVG 180
           VQPSFSP++STFHVLLSTSGNG D SLASVRQILNFMVT GF+PDK TTD+AVRSLCS G
Sbjct: 121 VQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDKATTDIAVRSLCSAG 180

Query: 181 LVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTY 240
           L+DEAVELV+E SQKHSPPDSYTYNHLVKQLCKSR+LSTVY+FI EMRSSCGA PDLVTY
Sbjct: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTY 240

Query: 241 TILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKE 300
           TILIDNVCN KNLREA RLVS+L KEGFKPDCFVYN IMKGYCM+GRG EAIGVYKKMKE
Sbjct: 241 TILIDNVCNGKNLREATRLVSVLAKEGFKPDCFVYNIIMKGYCMLGRGVEAIGVYKKMKE 300

Query: 301 VGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALG 360
            GLEPDVV+FNTLIFGLSKSGRVK+ARKFLDIMAEMGHFPDAVTYTSLMNGMC EGDALG
Sbjct: 301 EGLEPDVVTFNTLIFGLSKSGRVKDARKFLDIMAEMGHFPDAVTYTSLMNGMCREGDALG 360

Query: 361 ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVR 420
           ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLE ASYATFVR
Sbjct: 361 ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLEVASYATFVR 420

Query: 421 ALCRSGRIAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI 464
           ALCRSGRIAEAYEVFDYAVESKSLTDV AYSTLEITLK+LKKA E+ + I
Sbjct: 421 ALCRSGRIAEAYEVFDYAVESKSLTDVTAYSTLEITLKALKKAGEKGNVI 470

[Close]

BLAST of HG10016317 vs. NCBI nr
Match: XP_023518399.1 (pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita pepo subsp. pepo] >XP_023518400.1 pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 781.6 bits (2017), Expect = 3.9e-222
Identity = 402/470 (85.53%), Postives = 428/470 (91.06%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPL-------SSKKPTPKVSRKTPSGKSSGHPEK 60
           MGKLSPSFRSA+ST +VNKPPH PAAP L        SKK  PK SR+  S +SSGH EK
Sbjct: 1   MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSGHGEK 60

Query: 61  PKLPTLFKSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSK 120
           PKLPTLFKSASLADAKK+Y+SFI+TTKAPLDVR +NSLL+SY SIA+LNDSISFLRHMSK
Sbjct: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLRSYASIASLNDSISFLRHMSK 120

Query: 121 VQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVG 180
           VQPSFSP++STFHVLLSTSG G D SLASVRQILNFMVT GF+PDK TTD+AVRSLCS G
Sbjct: 121 VQPSFSPERSTFHVLLSTSGTGTDSSLASVRQILNFMVTQGFNPDKATTDIAVRSLCSAG 180

Query: 181 LVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTY 240
           L+DEAVELV+E SQKHSPPDSYTYNHLVKQLCKSR+LSTVY+FI EMR SCGA PDLVTY
Sbjct: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRISCGATPDLVTY 240

Query: 241 TILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKE 300
           TILIDNVCN KNLRE  RLVS+L KEGFKPDCF+YN IMKGYCM+GRG EAIGVYKKMKE
Sbjct: 241 TILIDNVCNGKNLREVTRLVSVLAKEGFKPDCFLYNIIMKGYCMLGRGVEAIGVYKKMKE 300

Query: 301 VGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALG 360
            GLEPDVV+FNTLIFGLSKSGRVK+ARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALG
Sbjct: 301 EGLEPDVVTFNTLIFGLSKSGRVKDARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALG 360

Query: 361 ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVR 420
           ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLE ASYATFVR
Sbjct: 361 ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLEVASYATFVR 420

Query: 421 ALCRSGRIAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI 464
           ALCRSGRIAEAYEVFDYAVESKSLTDV AYSTLEITLK+LKKA E+ + I
Sbjct: 421 ALCRSGRIAEAYEVFDYAVESKSLTDVTAYSTLEITLKALKKAGEKGNVI 470

[Close]

BLAST of HG10016317 vs. ExPASy Swiss-Prot
Match: Q84J71 (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana OX=3702 GN=At2g17670 PE=1 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 2.9e-156
Identity = 275/459 (59.91%), Postives = 355/459 (77.34%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPLSSKKPTPKVSRKTPSGKSSGHPEKPKLPTLF 60
           MGK+  SFRS  + ++V K   SP APP   +  T          +++  P +P L   F
Sbjct: 1   MGKVPSSFRSMPANLLVRKTTPSPPAPPRDFRNRTAVGGDSAKLPQNTQAPREPSLRNPF 60

Query: 61  KSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFSP 120
           KS +L+DAK ++ S  +T++ PLD++ HNS+LQSY SIA +ND++   +H+ K QP+F P
Sbjct: 61  KSPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHILKSQPNFRP 120

Query: 121 DQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVE 180
            +STF +LLS +   PD S+++V ++LN MV NG +PD+VTTD+AVRSLC  G VDEA +
Sbjct: 121 GRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKD 180

Query: 181 LVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV 240
           L+KEL++KHSPPD+YTYN L+K LCK + L  VY F+ EMR     KPDLV++TILIDNV
Sbjct: 181 LMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNV 240

Query: 241 CNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDV 300
           CNSKNLREAM LVS L   GFKPDCF+YNTIMKG+C + +GSEA+GVYKKMKE G+EPD 
Sbjct: 241 CNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQ 300

Query: 301 VSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLEE 360
           +++NTLIFGLSK+GRV+EAR +L  M + G+ PD  TYTSLMNGMC +G++LGALSLLEE
Sbjct: 301 ITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEE 360

Query: 361 MEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSGR 420
           MEA+GC+PN CTYNTLLHGL K+RL+D+G+ELY +MKSS +KLE+  YAT VR+L +SG+
Sbjct: 361 MEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGK 420

Query: 421 IAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQ 460
           +AEAYEVFDYAV+SKSL+D +AYSTLE TLK LKKA+EQ
Sbjct: 421 VAEAYEVFDYAVDSKSLSDASAYSTLETTLKWLKKAKEQ 459

[Close]

BLAST of HG10016317 vs. ExPASy Swiss-Prot
Match: Q3EDF8 (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX=3702 GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.7e-48
Identity = 104/346 (30.06%), Postives = 192/346 (55.49%), Query Frame = 0


Query: 84  DVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFSPDQSTFHVLL-STSGNGPDFSLAS 143
           DV  +N ++  Y     +N+++S L  M     S SPD  T++ +L S   +G    L  
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM-----SVSPDVVTYNTILRSLCDSG---KLKQ 230

Query: 144 VRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVELVKELSQKHSPPDSYTYNHLVK 203
             ++L+ M+     PD +T  + + + C    V  A++L+ E+  +   PD  TYN LV 
Sbjct: 231 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN 290

Query: 204 QLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSKNLREAMRLVSLLYKEGFK 263
            +CK   L     F+ +M SS G +P+++T+ I++ ++C++    +A +L++ + ++GF 
Sbjct: 291 GICKEGRLDEAIKFLNDMPSS-GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 350

Query: 264 PDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDVVSFNTLIFGLSKSGRVKEARKF 323
           P    +N ++   C  G    AI + +KM + G +P+ +S+N L+ G  K  ++  A ++
Sbjct: 351 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 410

Query: 324 LDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLEEMEAKGCSPNSCTYNTLLHGLSK 383
           L+ M   G +PD VTY +++  +C +G    A+ +L ++ +KGCSP   TYNT++ GL+K
Sbjct: 411 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 470

Query: 384 SRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSGRIAEAYEVF 429
           +    + I+L   M++ D+K +T +Y++ V  L R G++ EA + F
Sbjct: 471 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507

[Close]

BLAST of HG10016317 vs. ExPASy Swiss-Prot
Match: Q9ASZ8 (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX=3702 GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.5e-46
Identity = 106/343 (30.90%), Postives = 180/343 (52.48%), Query Frame = 0


Query: 104 SISFLRHMSKVQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTD 163
           S++F      ++  + PD  TF  L+  +G   +  ++   ++++ MV  G  P  +T +
Sbjct: 124 SLAFSAMGKIIKLGYEPDTVTFSTLI--NGLCLEGRVSEALELVDRMVEMGHKPTLITLN 183

Query: 164 LAVRSLCSVGLVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSS 223
             V  LC  G V +AV L+  + +    P+  TY  ++K +CKS   +     + +M   
Sbjct: 184 ALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER 243

Query: 224 CGAKPDLVTYTILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSE 283
              K D V Y+I+ID +C   +L  A  L + +  +GFK D  +Y T+++G+C  GR  +
Sbjct: 244 -KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDD 303

Query: 284 AIGVYKKMKEVGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMN 343
              + + M +  + PDVV+F+ LI    K G+++EA +    M + G  PD VTYTSL++
Sbjct: 304 GAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID 363

Query: 344 GMCCEGDALGALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKL 403
           G C E     A  +L+ M +KGC PN  T+N L++G  K+ L+D G+EL+  M    +  
Sbjct: 364 GFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVA 423

Query: 404 ETASYATFVRALCRSGRIAEAYEVFDYAVESKSLTDVAAYSTL 447
           +T +Y T ++  C  G++  A E+F   V  +   D+ +Y  L
Sbjct: 424 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKIL 463

[Close]

BLAST of HG10016317 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.1e-44
Identity = 100/336 (29.76%), Postives = 180/336 (53.57%), Query Frame = 0


Query: 89  NSLLQSYTSIATLNDSISFLRHMSKVQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILN 148
           N ++  +     + D+++F++ MS  Q  F PDQ TF+ L+  +G      +    +I++
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSN-QDGFFPDQYTFNTLV--NGLCKAGHVKHAIEIMD 322

Query: 149 FMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSR 208
            M+  G+DPD  T +  +  LC +G V EAVE++ ++  +   P++ TYN L+  LCK  
Sbjct: 323 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 382

Query: 209 ALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVY 268
            +      +  + +S G  PD+ T+  LI  +C ++N R AM L   +  +G +PD F Y
Sbjct: 383 QVEEATE-LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTY 442

Query: 269 NTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAE 328
           N ++   C  G+  EA+ + K+M+  G    V+++NTLI G  K+ + +EA +  D M  
Sbjct: 443 NMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEV 502

Query: 329 MGHFPDAVTYTSLMNGMCCEGDALGALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDR 388
            G   ++VTY +L++G+C       A  L+++M  +G  P+  TYN+LL    +   + +
Sbjct: 503 HGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKK 562

Query: 389 GIELYGLMKSSDMKLETASYATFVRALCRSGRIAEA 425
             ++   M S+  + +  +Y T +  LC++GR+  A
Sbjct: 563 AADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594

[Close]

BLAST of HG10016317 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.8e-44
Identity = 96/288 (33.33%), Postives = 154/288 (53.47%), Query Frame = 0


Query: 140 LASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVELVKELSQKHSPPDSYTYNH 199
           +     +L  M   G+ PD ++    V   C  G +D+  +L++ + +K   P+SY Y  
Sbjct: 262 IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 321

Query: 200 LVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSKNLREAMRLVSLLYKE 259
           ++  LC+   L+       EM    G  PD V YT LID  C   ++R A +    ++  
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQ-GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 381

Query: 260 GFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDVVSFNTLIFGLSKSGRVKEA 319
              PD   Y  I+ G+C IG   EA  ++ +M   GLEPD V+F  LI G  K+G +K+A
Sbjct: 382 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 441

Query: 320 RKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLEEMEAKGCSPNSCTYNTLLHG 379
            +  + M + G  P+ VTYT+L++G+C EGD   A  LL EM   G  PN  TYN++++G
Sbjct: 442 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 501

Query: 380 LSKSRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSGRIAEAYEV 428
           L KS  ++  ++L G  +++ +  +T +Y T + A C+SG + +A E+
Sbjct: 502 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548

[Close]

BLAST of HG10016317 vs. ExPASy TrEMBL
Match: A0A0A0KHF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507510 PE=4 SV=1)

HSP 1 Score: 827.4 bits (2136), Expect = 3.0e-236
Identity = 421/464 (90.73%), Postives = 445/464 (95.91%), Query Frame = 0


Query: 1   MGKLSPSFRSALST-VVVNKPPHSPAAPPLSSKKPTPKVSRKTPSGKSSGHPEKPKLPTL 60
           MGKLSPSFRS LS+  V+NKPPHSPAAPPLSSKK TPK SRKTPSG+SSGHPEKPKLPT+
Sbjct: 1   MGKLSPSFRSILSSNTVINKPPHSPAAPPLSSKKATPKPSRKTPSGQSSGHPEKPKLPTV 60

Query: 61  FKSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFS 120
           FKSASLADAKK+Y+SF+S TKAP ++R+HNSLLQSY SIATLNDSISFLRHMSKVQPSFS
Sbjct: 61  FKSASLADAKKLYSSFVSATKAPFNLRVHNSLLQSYASIATLNDSISFLRHMSKVQPSFS 120

Query: 121 PDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAV 180
           PDQSTFH+LLSTSGN PD +LASV+QILNFMVTNGF+PDKVT DLAVRSLCSVGLVDEAV
Sbjct: 121 PDQSTFHILLSTSGNRPDSTLASVQQILNFMVTNGFNPDKVTADLAVRSLCSVGLVDEAV 180

Query: 181 ELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDN 240
           ELVKELSQKH+PPD YTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDN
Sbjct: 181 ELVKELSQKHTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDN 240

Query: 241 VCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPD 300
           VCNS NLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCM+GRG+EAIGVYKKMKEVGLEPD
Sbjct: 241 VCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPD 300

Query: 301 VVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLE 360
           VV+FNTLIFGLSKSGRVKEAR FLDIMAEMGHFPDAVTYTSLMNGMC EG+ALGALSLL+
Sbjct: 301 VVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNALGALSLLK 360

Query: 361 EMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSG 420
           EMEAKGC+PNSCTYNTLLHGLSKSRLLDRGIELYGLMKS DMKLETASY+TFVRALCRSG
Sbjct: 361 EMEAKGCNPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSCDMKLETASYSTFVRALCRSG 420

Query: 421 RIAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI 464
           RIAEAYEVFDYAVESKSLTDV+AY +LE TLKSLK AREQAHAI
Sbjct: 421 RIAEAYEVFDYAVESKSLTDVSAYLSLESTLKSLKNAREQAHAI 464

[Close]

BLAST of HG10016317 vs. ExPASy TrEMBL
Match: A0A1S4DT84 (pentatricopeptide repeat-containing protein At2g17670 OS=Cucumis melo OX=3656 GN=LOC103485180 PE=4 SV=1)

HSP 1 Score: 808.5 bits (2087), Expect = 1.4e-230
Identity = 414/463 (89.42%), Postives = 440/463 (95.03%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPLSSKKPTPKVSRKTPSGKSSGHPEKPKLPTLF 60
           MGKLSPSFRS LST V++KP  SPAAPPLSSKKPTPK SRKTPSG+SSGHP KPKLPT+F
Sbjct: 1   MGKLSPSFRSILSTSVIHKPTLSPAAPPLSSKKPTPKPSRKTPSGQSSGHPVKPKLPTVF 60

Query: 61  KSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFSP 120
           KSASLADAKK+Y+SFIST+KAP ++R+HNSLLQSY SIATLNDSISFLRHMSKVQPSFSP
Sbjct: 61  KSASLADAKKLYSSFISTSKAPFNLRVHNSLLQSYASIATLNDSISFLRHMSKVQPSFSP 120

Query: 121 DQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVE 180
           DQSTFH+LLSTS N PD SLASVR+ILNFMVTNGF+PDKVT DLAVRSLCSVGLVDEAVE
Sbjct: 121 DQSTFHILLSTSENRPDSSLASVRKILNFMVTNGFNPDKVTADLAVRSLCSVGLVDEAVE 180

Query: 181 LVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV 240
           LVKELSQKH+P D YTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV
Sbjct: 181 LVKELSQKHTPLDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV 240

Query: 241 CNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDV 300
           CNS NLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCM+GRG+EAIGVYKKMKEVGLEPD+
Sbjct: 241 CNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPDL 300

Query: 301 VSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLEE 360
           V+FNTLIFGLSKSGRVKEA  FLDIMAEMGHFPD VTYTSLMNGMC EG+ALGALSLL+E
Sbjct: 301 VTFNTLIFGLSKSGRVKEAIDFLDIMAEMGHFPDTVTYTSLMNGMCREGNALGALSLLKE 360

Query: 361 MEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSGR 420
           MEAKGC+PNS TYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLE+ASY+TFVRALCRSGR
Sbjct: 361 MEAKGCNPNSFTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLESASYSTFVRALCRSGR 420

Query: 421 IAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI 464
           IAEAYEVFDYAVESKSLTDV+AY +LE TLKSLK AREQAHA+
Sbjct: 421 IAEAYEVFDYAVESKSLTDVSAYLSLESTLKSLKNAREQAHAV 463

[Close]

BLAST of HG10016317 vs. ExPASy TrEMBL
Match: A0A6J1EGP9 (pentatricopeptide repeat-containing protein At2g17670 OS=Cucurbita moschata OX=3662 GN=LOC111433937 PE=4 SV=1)

HSP 1 Score: 782.7 bits (2020), Expect = 8.4e-223
Identity = 405/470 (86.17%), Postives = 429/470 (91.28%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPL-------SSKKPTPKVSRKTPSGKSSGHPEK 60
           MGKLSPSFRSA+ST +VNKPPH PAAP L        SKK  PK SR+  S +SS H EK
Sbjct: 1   MGKLSPSFRSAISTPIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60

Query: 61  PKLPTLFKSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSK 120
           PKLPTLFKSASLADAKK+Y+SFI+TTKAPLDVR +NSLLQSY SIA+LNDSISFLRHMSK
Sbjct: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSK 120

Query: 121 VQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVG 180
           VQPSFSP++STFHVLLSTSGNG D SLASVRQILNFMVT GF+PDK TTD+AVRSLCS G
Sbjct: 121 VQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDKATTDIAVRSLCSAG 180

Query: 181 LVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTY 240
           L+DEAVELV+E SQKHSPPDSYTYNHLVKQLCKSR+LSTVY+FI EMRSSCGA PDLVTY
Sbjct: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTY 240

Query: 241 TILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKE 300
           TILIDNVCN KNLREA RLVS+L KEGFKPDCFVYN IMKGYCM+GRG EAIGVYKKMKE
Sbjct: 241 TILIDNVCNGKNLREATRLVSVLAKEGFKPDCFVYNIIMKGYCMLGRGVEAIGVYKKMKE 300

Query: 301 VGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALG 360
            GLEPDVV+FNTLIFGLSKSGRVK+ARKFLDIMAEMGHFPDAVTYTSLMNGMC EGDALG
Sbjct: 301 EGLEPDVVTFNTLIFGLSKSGRVKDARKFLDIMAEMGHFPDAVTYTSLMNGMCREGDALG 360

Query: 361 ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVR 420
           ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLE ASYATFVR
Sbjct: 361 ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLEVASYATFVR 420

Query: 421 ALCRSGRIAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI 464
           ALCRSGRIAEAYEVFDYAVESKSLTDV AYSTLEITLK+LKKA E+ + I
Sbjct: 421 ALCRSGRIAEAYEVFDYAVESKSLTDVTAYSTLEITLKALKKAGEKGNVI 470

[Close]

BLAST of HG10016317 vs. ExPASy TrEMBL
Match: A0A6J1KT16 (pentatricopeptide repeat-containing protein At2g17670-like OS=Cucurbita maxima OX=3661 GN=LOC111497342 PE=4 SV=1)

HSP 1 Score: 778.1 bits (2008), Expect = 2.1e-221
Identity = 400/470 (85.11%), Postives = 430/470 (91.49%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPL-------SSKKPTPKVSRKTPSGKSSGHPEK 60
           MGKLSPSFRSA+ST +VNKPP+ PAAP L        SKK  PK SR+  S +SSGH EK
Sbjct: 1   MGKLSPSFRSAISTAIVNKPPNPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSGHGEK 60

Query: 61  PKLPTLFKSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSK 120
           PKLPTLFKSASLA+AKK+Y+SFI+TTKAPLDVR +NSLL SYTSIA+LNDSISFLRHMSK
Sbjct: 61  PKLPTLFKSASLAEAKKLYSSFINTTKAPLDVRFYNSLLHSYTSIASLNDSISFLRHMSK 120

Query: 121 VQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVG 180
           VQP+FSP++STFHVLLSTSGNG D SLASVRQILNFMVT+GF+PDK T D+AVRSLCS G
Sbjct: 121 VQPTFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTHGFNPDKATIDIAVRSLCSAG 180

Query: 181 LVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTY 240
           L+DEAVELV+E SQKHSPPDSYTYNHLVKQLCKSR+LSTVY FI EMRSSCGA PDLVTY
Sbjct: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYGFIHEMRSSCGANPDLVTY 240

Query: 241 TILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKE 300
           TILIDNVCN KNLREA RLVS+L +EGFKPDCFVYNTIMKGYCM+GRGSEAIGVYKKMKE
Sbjct: 241 TILIDNVCNGKNLREATRLVSVLAEEGFKPDCFVYNTIMKGYCMLGRGSEAIGVYKKMKE 300

Query: 301 VGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALG 360
            GLEPDVV+FNTLIFGLSKSGRVK+ARKFLDIMAEMGHFPD VTYTSLMNGMC EGDALG
Sbjct: 301 EGLEPDVVTFNTLIFGLSKSGRVKDARKFLDIMAEMGHFPDVVTYTSLMNGMCREGDALG 360

Query: 361 ALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVR 420
           ALSLLEEMEAKGCSPNSC+YNTLLHGLSKSRLLD+GIELYGLMKS DMKLE ASYATFVR
Sbjct: 361 ALSLLEEMEAKGCSPNSCSYNTLLHGLSKSRLLDKGIELYGLMKSGDMKLEAASYATFVR 420

Query: 421 ALCRSGRIAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI 464
           ALCRSGRIAEAYEVFDYAVES+SLTDVAAYSTLE TLK+LKKAREQ + I
Sbjct: 421 ALCRSGRIAEAYEVFDYAVESRSLTDVAAYSTLETTLKALKKAREQGNVI 470

[Close]

BLAST of HG10016317 vs. ExPASy TrEMBL
Match: A0A6J1BW58 (pentatricopeptide repeat-containing protein At2g17670 OS=Momordica charantia OX=3673 GN=LOC111005895 PE=4 SV=1)

HSP 1 Score: 756.9 bits (1953), Expect = 4.9e-215
Identity = 397/471 (84.29%), Postives = 425/471 (90.23%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHS-PAAPPL-------SSKKPTPKVSRKTPSGKSSGHPE 60
           MGKLSPSFRSA+ST ++NKPP    AAPPL        SKK  PK SRK  S +SSG  E
Sbjct: 1   MGKLSPSFRSAISTTILNKPPQPLAAAPPLLSGEPRSLSKKLPPKPSRKIQSAQSSGPLE 60

Query: 61  KPKLPTLFKSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMS 120
           KPK  TLFKS+SLADAKK+Y+SFI+TT+APLD+R +NSLLQSY SIATLNDSISFLR+MS
Sbjct: 61  KPKTATLFKSSSLADAKKLYSSFIATTRAPLDLRFYNSLLQSYASIATLNDSISFLRYMS 120

Query: 121 KVQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSV 180
           KVQPSFSPD+STFHVLLSTSGNG   SLASV+QILNFMV+NGF+PDKVTTD+AVRSLCS 
Sbjct: 121 KVQPSFSPDRSTFHVLLSTSGNGSGSSLASVQQILNFMVSNGFNPDKVTTDIAVRSLCSA 180

Query: 181 GLVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVT 240
           GL+DEAVELVKELS+K SPPDS+TYNHLVKQLCKSRALSTVY FI EMRSS G+KPDLVT
Sbjct: 181 GLIDEAVELVKELSRKQSPPDSFTYNHLVKQLCKSRALSTVYGFIDEMRSSFGSKPDLVT 240

Query: 241 YTILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMK 300
           YTILIDNVCN KNLREA RL+S+L +EGFKPDCFVYNTIMKGYCM+GRGSEAIGVYKKMK
Sbjct: 241 YTILIDNVCNGKNLREATRLISVLGEEGFKPDCFVYNTIMKGYCMLGRGSEAIGVYKKMK 300

Query: 301 EVGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDAL 360
           E GLEPDVV+FNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMC EGDAL
Sbjct: 301 EEGLEPDVVTFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCREGDAL 360

Query: 361 GALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFV 420
           GALSLLE MEAKGCSPNSCTYNTLLHGL+KSRLLDRGIELYGLMKS  MKLETASYAT V
Sbjct: 361 GALSLLEVMEAKGCSPNSCTYNTLLHGLAKSRLLDRGIELYGLMKSGGMKLETASYATLV 420

Query: 421 RALCRSGRIAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQAHAI 464
           RALCRS RIAEAYEVFDYAVESKS+TDVAAYSTLE TLKSLKK REQ HAI
Sbjct: 421 RALCRSDRIAEAYEVFDYAVESKSMTDVAAYSTLESTLKSLKKVREQGHAI 471

[Close]

BLAST of HG10016317 vs. TAIR 10
Match: AT2G17670.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 553.1 bits (1424), Expect = 2.1e-157
Identity = 275/459 (59.91%), Postives = 355/459 (77.34%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPLSSKKPTPKVSRKTPSGKSSGHPEKPKLPTLF 60
           MGK+  SFRS  + ++V K   SP APP   +  T          +++  P +P L   F
Sbjct: 1   MGKVPSSFRSMPANLLVRKTTPSPPAPPRDFRNRTAVGGDSAKLPQNTQAPREPSLRNPF 60

Query: 61  KSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFSP 120
           KS +L+DAK ++ S  +T++ PLD++ HNS+LQSY SIA +ND++   +H+ K QP+F P
Sbjct: 61  KSPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHILKSQPNFRP 120

Query: 121 DQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVE 180
            +STF +LLS +   PD S+++V ++LN MV NG +PD+VTTD+AVRSLC  G VDEA +
Sbjct: 121 GRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKD 180

Query: 181 LVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV 240
           L+KEL++KHSPPD+YTYN L+K LCK + L  VY F+ EMR     KPDLV++TILIDNV
Sbjct: 181 LMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNV 240

Query: 241 CNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDV 300
           CNSKNLREAM LVS L   GFKPDCF+YNTIMKG+C + +GSEA+GVYKKMKE G+EPD 
Sbjct: 241 CNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQ 300

Query: 301 VSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLEE 360
           +++NTLIFGLSK+GRV+EAR +L  M + G+ PD  TYTSLMNGMC +G++LGALSLLEE
Sbjct: 301 ITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEE 360

Query: 361 MEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSGR 420
           MEA+GC+PN CTYNTLLHGL K+RL+D+G+ELY +MKSS +KLE+  YAT VR+L +SG+
Sbjct: 361 MEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGK 420

Query: 421 IAEAYEVFDYAVESKSLTDVAAYSTLEITLKSLKKAREQ 460
           +AEAYEVFDYAV+SKSL+D +AYSTLE TLK LKKA+EQ
Sbjct: 421 VAEAYEVFDYAVDSKSLSDASAYSTLETTLKWLKKAKEQ 459

[Close]

BLAST of HG10016317 vs. TAIR 10
Match: AT2G17670.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 393.7 bits (1010), Expect = 2.1e-109
Identity = 195/349 (55.87%), Postives = 256/349 (73.35%), Query Frame = 0


Query: 1   MGKLSPSFRSALSTVVVNKPPHSPAAPPLSSKKPTPKVSRKTPSGKSSGHPEKPKLPTLF 60
           MGK+  SFRS  + ++V K   SP APP   +  T          +++  P +P L   F
Sbjct: 1   MGKVPSSFRSMPANLLVRKTTPSPPAPPRDFRNRTAVGGDSAKLPQNTQAPREPSLRNPF 60

Query: 61  KSASLADAKKIYTSFISTTKAPLDVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFSP 120
           KS +L+DAK ++ S  +T++ PLD++ HNS+LQSY SIA +ND++   +H+ K QP+F P
Sbjct: 61  KSPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHILKSQPNFRP 120

Query: 121 DQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVE 180
            +STF +LLS +   PD S+++V ++LN MV NG +PD+VTTD+AVRSLC  G VDEA +
Sbjct: 121 GRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKD 180

Query: 181 LVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNV 240
           L+KEL++KHSPPD+YTYN L+K LCK + L  VY F+ EMR     KPDLV++TILIDNV
Sbjct: 181 LMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNV 240

Query: 241 CNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDV 300
           CNSKNLREAM LVS L   GFKPDCF+YNTIMKG+C + +GSEA+GVYKKMKE G+EPD 
Sbjct: 241 CNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQ 300

Query: 301 VSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEG 350
           +++NTLIFGLSK+GRV+EAR +L  M + G+ PD  TYTSLMNGMC +G
Sbjct: 301 ITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKG 349

[Close]

BLAST of HG10016317 vs. TAIR 10
Match: AT1G09900.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 193.0 bits (489), Expect = 5.5e-49
Identity = 104/346 (30.06%), Postives = 192/346 (55.49%), Query Frame = 0


Query: 84  DVRIHNSLLQSYTSIATLNDSISFLRHMSKVQPSFSPDQSTFHVLL-STSGNGPDFSLAS 143
           DV  +N ++  Y     +N+++S L  M     S SPD  T++ +L S   +G    L  
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM-----SVSPDVVTYNTILRSLCDSG---KLKQ 230

Query: 144 VRQILNFMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVELVKELSQKHSPPDSYTYNHLVK 203
             ++L+ M+     PD +T  + + + C    V  A++L+ E+  +   PD  TYN LV 
Sbjct: 231 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN 290

Query: 204 QLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSKNLREAMRLVSLLYKEGFK 263
            +CK   L     F+ +M SS G +P+++T+ I++ ++C++    +A +L++ + ++GF 
Sbjct: 291 GICKEGRLDEAIKFLNDMPSS-GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 350

Query: 264 PDCFVYNTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDVVSFNTLIFGLSKSGRVKEARKF 323
           P    +N ++   C  G    AI + +KM + G +P+ +S+N L+ G  K  ++  A ++
Sbjct: 351 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 410

Query: 324 LDIMAEMGHFPDAVTYTSLMNGMCCEGDALGALSLLEEMEAKGCSPNSCTYNTLLHGLSK 383
           L+ M   G +PD VTY +++  +C +G    A+ +L ++ +KGCSP   TYNT++ GL+K
Sbjct: 411 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 470

Query: 384 SRLLDRGIELYGLMKSSDMKLETASYATFVRALCRSGRIAEAYEVF 429
           +    + I+L   M++ D+K +T +Y++ V  L R G++ EA + F
Sbjct: 471 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507

[Close]

BLAST of HG10016317 vs. TAIR 10
Match: AT1G12620.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 186.8 bits (473), Expect = 3.9e-47
Identity = 106/343 (30.90%), Postives = 180/343 (52.48%), Query Frame = 0


Query: 104 SISFLRHMSKVQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILNFMVTNGFDPDKVTTD 163
           S++F      ++  + PD  TF  L+  +G   +  ++   ++++ MV  G  P  +T +
Sbjct: 124 SLAFSAMGKIIKLGYEPDTVTFSTLI--NGLCLEGRVSEALELVDRMVEMGHKPTLITLN 183

Query: 164 LAVRSLCSVGLVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSRALSTVYNFIVEMRSS 223
             V  LC  G V +AV L+  + +    P+  TY  ++K +CKS   +     + +M   
Sbjct: 184 ALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER 243

Query: 224 CGAKPDLVTYTILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMIGRGSE 283
              K D V Y+I+ID +C   +L  A  L + +  +GFK D  +Y T+++G+C  GR  +
Sbjct: 244 -KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDD 303

Query: 284 AIGVYKKMKEVGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMN 343
              + + M +  + PDVV+F+ LI    K G+++EA +    M + G  PD VTYTSL++
Sbjct: 304 GAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID 363

Query: 344 GMCCEGDALGALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKL 403
           G C E     A  +L+ M +KGC PN  T+N L++G  K+ L+D G+EL+  M    +  
Sbjct: 364 GFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVA 423

Query: 404 ETASYATFVRALCRSGRIAEAYEVFDYAVESKSLTDVAAYSTL 447
           +T +Y T ++  C  G++  A E+F   V  +   D+ +Y  L
Sbjct: 424 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKIL 463

[Close]

BLAST of HG10016317 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 180.3 bits (456), Expect = 3.7e-45
Identity = 100/336 (29.76%), Postives = 180/336 (53.57%), Query Frame = 0


Query: 89  NSLLQSYTSIATLNDSISFLRHMSKVQPSFSPDQSTFHVLLSTSGNGPDFSLASVRQILN 148
           N ++  +     + D+++F++ MS  Q  F PDQ TF+ L+  +G      +    +I++
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSN-QDGFFPDQYTFNTLV--NGLCKAGHVKHAIEIMD 322

Query: 149 FMVTNGFDPDKVTTDLAVRSLCSVGLVDEAVELVKELSQKHSPPDSYTYNHLVKQLCKSR 208
            M+  G+DPD  T +  +  LC +G V EAVE++ ++  +   P++ TYN L+  LCK  
Sbjct: 323 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 382

Query: 209 ALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSKNLREAMRLVSLLYKEGFKPDCFVY 268
            +      +  + +S G  PD+ T+  LI  +C ++N R AM L   +  +G +PD F Y
Sbjct: 383 QVEEATE-LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTY 442

Query: 269 NTIMKGYCMIGRGSEAIGVYKKMKEVGLEPDVVSFNTLIFGLSKSGRVKEARKFLDIMAE 328
           N ++   C  G+  EA+ + K+M+  G    V+++NTLI G  K+ + +EA +  D M  
Sbjct: 443 NMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEV 502

Query: 329 MGHFPDAVTYTSLMNGMCCEGDALGALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDR 388
            G   ++VTY +L++G+C       A  L+++M  +G  P+  TYN+LL    +   + +
Sbjct: 503 HGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKK 562

Query: 389 GIELYGLMKSSDMKLETASYATFVRALCRSGRIAEA 425
             ++   M S+  + +  +Y T +  LC++GR+  A
Sbjct: 563 AADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594

The following BLAST results are available for this feature:

BLAST of HG10016317 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883848.1	1.0e-246	95.24	pentatricopeptide repeat-containing protein At2g17670 [Benincasa hispida]	[more]
XP_004135005.1	6.1e-236	90.73	pentatricopeptide repeat-containing protein At2g17670 [Cucumis sativus] >KGN4897...	[more]
XP_016899201.1	2.9e-230	89.42	PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Cucumis melo]	[more]
XP_022926982.1	1.7e-222	86.17	pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata] >XP_0...	[more]
XP_023518399.1	3.9e-222	85.53	pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita pepo subsp...	[more]

BLAST of HG10016317 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J71	2.9e-156	59.91	Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana OX...	[more]
Q3EDF8	7.7e-48	30.06	Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX...	[more]
Q9ASZ8	5.5e-46	30.90	Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX...	[more]
Q9LFF1	5.1e-44	29.76	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]
Q0WVK7	8.8e-44	33.33	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]

BLAST of HG10016317 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHF8	3.0e-236	90.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507510 PE=4 SV=1	[more]
A0A1S4DT84	1.4e-230	89.42	pentatricopeptide repeat-containing protein At2g17670 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1EGP9	8.4e-223	86.17	pentatricopeptide repeat-containing protein At2g17670 OS=Cucurbita moschata OX=3...	[more]
A0A6J1KT16	2.1e-221	85.11	pentatricopeptide repeat-containing protein At2g17670-like OS=Cucurbita maxima O...	[more]
A0A6J1BW58	4.9e-215	84.29	pentatricopeptide repeat-containing protein At2g17670 OS=Momordica charantia OX=...	[more]

BLAST of HG10016317 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17670.1	2.1e-157	59.91	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G17670.2	2.1e-109	55.87	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G09900.1	5.5e-49	30.06	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G12620.1	3.9e-47	30.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G53700.1	3.7e-45	29.76	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 405..430 e-value: 2.6E-5 score: 23.8 coord: 364..397 e-value: 7.6E-7 score: 28.8 coord: 260..292 e-value: 2.7E-7 score: 30.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 166..187 e-value: 0.37 score: 11.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 336..370 e-value: 2.6E-9 score: 34.7 coord: 301..335 e-value: 1.5E-6 score: 26.0 coord: 407..435 e-value: 2.1E-4 score: 19.2 coord: 231..265 e-value: 4.6E-6 score: 24.5 coord: 267..300 e-value: 2.5E-9 score: 34.7 coord: 371..402 e-value: 2.2E-6 score: 25.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 298..346 e-value: 1.2E-14 score: 54.2 coord: 192..242 e-value: 3.7E-10 score: 39.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 158..192 score: 8.944478
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 404..438 score: 9.021208
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 334..368 score: 12.276713
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 229..263 score: 10.796938
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 299..333 score: 11.958836
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 369..403 score: 10.424253
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 264..298 score: 12.58363
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 256..327 e-value: 2.6E-21 score: 78.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 55..255 e-value: 1.3E-26 score: 95.7 coord: 328..463 e-value: 1.2E-30 score: 108.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 1..462
None	No IPR available	PANTHER	PTHR47933:SF34	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 1..462
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 244..365

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016317.1	HG10016317.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding