HG10016309 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016309
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr03: 4131447 .. 4131698 (-)
RNA-Seq Expression	HG10016309
Synteny	HG10016309

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTAGCTTCTGAATGCCTCAGCAAGACTGACACCATAGATGAATCGTGGCGAGCATTCAAAGTGCAAAGAACAGCACCAGCCATGGGAACAGCAAAGTGTAGCTCATACATGGCAGGGACATTAGGAGCCAGAGTTGCAACCTGTTCAATTCAACACAAGTTCAAACTTGCAAATTGCAGCAACAAATCCCAGAACCACAACAGAAACAAAGAACACCCCATTAAAGAAAAACGACTCCCTATTTAA

mRNA sequence

ATGATCTTAGCTTCTGAATGCCTCAGCAAGACTGACACCATAGATGAATCGTGGCGAGCATTCAAAGTGCAAAGAACAGCACCAGCCATGGGAACAGCAAAGTGTAGCTCATACATGGCAGGGACATTAGGAGCCAGAGTTGCAACCTGTTCAATTCAACACAAGTTCAAACTTGCAAATTGCAGCAACAAATCCCAGAACCACAACAGAAACAAAGAACACCCCATTAAAGAAAAACGACTCCCTATTTAA

Coding sequence (CDS)

ATGATCTTAGCTTCTGAATGCCTCAGCAAGACTGACACCATAGATGAATCGTGGCGAGCATTCAAAGTGCAAAGAACAGCACCAGCCATGGGAACAGCAAAGTGTAGCTCATACATGGCAGGGACATTAGGAGCCAGAGTTGCAACCTGTTCAATTCAACACAAGTTCAAACTTGCAAATTGCAGCAACAAATCCCAGAACCACAACAGAAACAAAGAACACCCCATTAAAGAAAAACGACTCCCTATTTAA

Protein sequence

MILASECLSKTDTIDESWRAFKVQRTAPAMGTAKCSSYMAGTLGARVATCSIQHKFKLANCSNKSQNHNRNKEHPIKEKRLPI

Homology

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BLAST of HG10016309 vs. ExPASy TrEMBL
Match: A0A0A9DQT0 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.0e-09
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 3  LASECLSKTDTIDESWRAFKVQRTAPAMGTAKCSSYMAGTLGARVATCS 52
          LA EC S+TDT+  S R  KVQRTAPAMGTAKCSSY+AGT G R AT S
Sbjct: 34 LAPECFSRTDTMAASCRVLKVQRTAPAMGTAKCSSYIAGTFGLRTATTS 82

The following BLAST results are available for this feature:

BLAST of HG10016309 vs.


Match Name	E-value	Identity	Description

BLAST of HG10016309 vs.


Match Name	E-value	Identity	Description

BLAST of HG10016309 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9DQT0	5.0e-09	71.43	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of HG10016309 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016309.1	HG10016309.1	mRNA