HG10016287 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016287
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Glycoside hydrolase, family 1
Location	Chr03: 4012893 .. 4013336 (+)
RNA-Seq Expression	HG10016287
Synteny	HG10016287

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGGATTGACGATTTACCATATTCTAGGCCACCAAAACAGAAAGCTTTGCACCAAAAGGCTTCCACAGCATCTCATTTACAAGTGAAAGATCCCAACGATCGAATTAAGGGGTCTTTTCCAGCACAAACAGCACAGAAGGCCTCCAAAAGAAGTTTAAAGAATGAACCATCTGTAGCATTTCAGCAGCCCGAAAGGTCGAATTCGGATTCTTTGCCTGATTCATCTGCATCTGGGAATGAGTACCGTGCCTTAAGAAGAAAATATTTACTCCTGGAGGAAGAGAGCTTTACTCTGGGAACAGAACTGAAAGAAGTTGAAGATGAAGTGAAGACCCTAGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTTCTTGTTTTAGAAGGACTAATCGATCGTTCAGAATTGCAGCTTGCCCAGTCAAATGTACCACAACTTTAG

mRNA sequence

ATGTCTCGGATTGACGATTTACCATATTCTAGGCCACCAAAACAGAAAGCTTTGCACCAAAAGGCTTCCACAGCATCTCATTTACAAGTGAAAGATCCCAACGATCGAATTAAGGGGTCTTTTCCAGCACAAACAGCACAGAAGGCCTCCAAAAGAAGTTTAAAGAATGAACCATCTGTAGCATTTCAGCAGCCCGAAAGGTCGAATTCGGATTCTTTGCCTGATTCATCTGCATCTGGGAATGAGTACCGTGCCTTAAGAAGAAAATATTTACTCCTGGAGGAAGAGAGCTTTACTCTGGGAACAGAACTGAAAGAAGTTGAAGATGAAGTGAAGACCCTAGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTTCTTGTTTTAGAAGGACTAATCGATCGTTCAGAATTGCAGCTTGCCCAGTCAAATGTACCACAACTTTAG

Coding sequence (CDS)

ATGTCTCGGATTGACGATTTACCATATTCTAGGCCACCAAAACAGAAAGCTTTGCACCAAAAGGCTTCCACAGCATCTCATTTACAAGTGAAAGATCCCAACGATCGAATTAAGGGGTCTTTTCCAGCACAAACAGCACAGAAGGCCTCCAAAAGAAGTTTAAAGAATGAACCATCTGTAGCATTTCAGCAGCCCGAAAGGTCGAATTCGGATTCTTTGCCTGATTCATCTGCATCTGGGAATGAGTACCGTGCCTTAAGAAGAAAATATTTACTCCTGGAGGAAGAGAGCTTTACTCTGGGAACAGAACTGAAAGAAGTTGAAGATGAAGTGAAGACCCTAGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTTCTTGTTTTAGAAGGACTAATCGATCGTTCAGAATTGCAGCTTGCCCAGTCAAATGTACCACAACTTTAG

Protein sequence

MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSVAFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAQSNVPQL

Homology

[Close]

BLAST of HG10016287 vs. NCBI nr
Match: XP_038881521.1 (uncharacterized protein LOC120073026 [Benincasa hispida])

HSP 1 Score: 260.8 bits (665), Expect = 7.3e-66
Identity = 139/147 (94.56%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLPYS+PPKQKALHQKAS ASHLQ KDPNDRIKGSF AQTAQKASKRSLKNEPS+
Sbjct: 1   MSRIDDLPYSKPPKQKALHQKASAASHLQAKDPNDRIKGSFSAQTAQKASKRSLKNEPSL 60

Query: 61  AFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKLG 120
            FQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKL 
Sbjct: 61  TFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKLS 120

Query: 121 LLDELLVLEGLIDRSELQLAQSNVPQL 148
           LLDELLVLEGLIDRSELQLAQSN+PQL
Sbjct: 121 LLDELLVLEGLIDRSELQLAQSNLPQL 147

[Close]

BLAST of HG10016287 vs. NCBI nr
Match: XP_011658091.1 (uncharacterized protein LOC101212199 [Cucumis sativus] >KGN49006.1 hypothetical protein Csa_003830 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 2.1e-65
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLPYSRPPKQKALHQKASTASH+QVKDP+DRIKGSFPAQTAQKASKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKLG 120
            FQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESF+LG ELK VEDEVKTLEEEKLG
Sbjct: 61  VFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSLGAELKGVEDEVKTLEEEKLG 120

Query: 121 LLDELLVLEGLIDRSELQLAQSNVPQ 147
           LLDELLVLEGLIDRSELQLA SN+PQ
Sbjct: 121 LLDELLVLEGLIDRSELQLAHSNLPQ 146

[Close]

BLAST of HG10016287 vs. NCBI nr
Match: XP_016899190.1 (PREDICTED: uncharacterized protein LOC103485204 [Cucumis melo] >KAA0025600.1 uncharacterized protein E6C27_scaffold253G00910 [Cucumis melo var. makuwa] >TYK12475.1 uncharacterized protein E5676_scaffold255G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 138/148 (93.24%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLPYSRPPKQKALHQKASTASHLQ+KDP++RIKGSFPAQTAQKASKRSLKNEPS+
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKL 120
            FQQPERSNSDSLPD SSASGNEYRALRRKYLLLEEESFTLG ELKEVEDEVKTLEEEKL
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDEVKTLEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAQSNVPQL 148
           GLLDELLVLEGLIDRSELQLA SN+P L
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLPHL 148

[Close]

BLAST of HG10016287 vs. NCBI nr
Match: XP_022950616.1 (uncharacterized protein LOC111453661 [Cucurbita moschata])

HSP 1 Score: 248.4 bits (633), Expect = 3.7e-62
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLP+SRPPKQKA HQKASTASHLQ KDPNDRIKGSFPAQTAQK+SKRSLKNEPSV
Sbjct: 1   MSRIDDLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LGTELKEVEDEVK LEEEKL
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAQSNVP 146
           GLLDELLVLEGLIDRSELQLA SN+P
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLP 146

[Close]

BLAST of HG10016287 vs. NCBI nr
Match: XP_023545100.1 (uncharacterized protein LOC111804503 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.1 bits (632), Expect = 4.9e-62
Identity = 135/146 (92.47%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLPYSRPPKQKA HQKASTASHLQ KDPNDRIKGSFPAQT QK+SKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTPQKSSKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LGTELKEVEDEVK LEEEKL
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAQSNVP 146
           GLLDELLVLEGLIDRSELQLA SN+P
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLP 146

[Close]

BLAST of HG10016287 vs. ExPASy TrEMBL
Match: A0A0A0KMU4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510240 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.0e-65
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLPYSRPPKQKALHQKASTASH+QVKDP+DRIKGSFPAQTAQKASKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKLG 120
            FQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESF+LG ELK VEDEVKTLEEEKLG
Sbjct: 61  VFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSLGAELKGVEDEVKTLEEEKLG 120

Query: 121 LLDELLVLEGLIDRSELQLAQSNVPQ 147
           LLDELLVLEGLIDRSELQLA SN+PQ
Sbjct: 121 LLDELLVLEGLIDRSELQLAHSNLPQ 146

[Close]

BLAST of HG10016287 vs. ExPASy TrEMBL
Match: A0A5D3CLN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00520 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.7e-65
Identity = 138/148 (93.24%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLPYSRPPKQKALHQKASTASHLQ+KDP++RIKGSFPAQTAQKASKRSLKNEPS+
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKL 120
            FQQPERSNSDSLPD SSASGNEYRALRRKYLLLEEESFTLG ELKEVEDEVKTLEEEKL
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDEVKTLEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAQSNVPQL 148
           GLLDELLVLEGLIDRSELQLA SN+P L
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLPHL 148

[Close]

BLAST of HG10016287 vs. ExPASy TrEMBL
Match: A0A1S4DU11 (uncharacterized protein LOC103485204 OS=Cucumis melo OX=3656 GN=LOC103485204 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.7e-65
Identity = 138/148 (93.24%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLPYSRPPKQKALHQKASTASHLQ+KDP++RIKGSFPAQTAQKASKRSLKNEPS+
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKL 120
            FQQPERSNSDSLPD SSASGNEYRALRRKYLLLEEESFTLG ELKEVEDEVKTLEEEKL
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDEVKTLEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAQSNVPQL 148
           GLLDELLVLEGLIDRSELQLA SN+P L
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLPHL 148

[Close]

BLAST of HG10016287 vs. ExPASy TrEMBL
Match: A0A6J1GFB4 (uncharacterized protein LOC111453661 OS=Cucurbita moschata OX=3662 GN=LOC111453661 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLP+SRPPKQKA HQKASTASHLQ KDPNDRIKGSFPAQTAQK+SKRSLKNEPSV
Sbjct: 1   MSRIDDLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LGTELKEVEDEVK LEEEKL
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAQSNVP 146
           GLLDELLVLEGLIDRSELQLA SN+P
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLP 146

[Close]

BLAST of HG10016287 vs. ExPASy TrEMBL
Match: A0A6J1ITW9 (uncharacterized protein LOC111478385 OS=Cucurbita maxima OX=3661 GN=LOC111478385 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.0e-62
Identity = 134/146 (91.78%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSV 60
           MSRIDDLPYSRPPKQKA H KASTASHLQ KDPNDRIKGSFPAQT QK+SKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKASHPKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LGTELKEVEDEVK LEEEKL
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAQSNVP 146
           GLLDELLVLEGLIDRSELQLA SN+P
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLP 146

[Close]

BLAST of HG10016287 vs. TAIR 10
Match: AT3G51500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 9.3e-19
Identity = 59/112 (52.68%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 23  STASHLQVKDPNDRIKGSFPAQTAQKASKRSLKNEPSVAFQQPERS-NSDSLPDSSASGN 82
           S A  +++  P   +    P +  +K S RS  N+      Q E S NSDS P     GN
Sbjct: 10  SEAKRMKIPTPKQPLT-QLPPRIGKKVSNRSKSNQVHAISHQLEMSPNSDSSP-----GN 69

Query: 83  EYRALRRKYLLLEEESFTLGTELKEVEDEVKTLEEEKLGLLDELLVLEGLID 134
           EYRALRRKYLLLEE+SF L  ELKE EDEVK LE+EKL LLD+L+V+EGL+D
Sbjct: 70  EYRALRRKYLLLEEDSFALERELKEAEDEVKALEDEKLELLDKLVVMEGLVD 115

The following BLAST results are available for this feature:

BLAST of HG10016287 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881521.1	7.3e-66	94.56	uncharacterized protein LOC120073026 [Benincasa hispida]	[more]
XP_011658091.1	2.1e-65	94.52	uncharacterized protein LOC101212199 [Cucumis sativus] >KGN49006.1 hypothetical ...	[more]
XP_016899190.1	1.8e-64	93.24	PREDICTED: uncharacterized protein LOC103485204 [Cucumis melo] >KAA0025600.1 unc...	[more]
XP_022950616.1	3.7e-62	92.47	uncharacterized protein LOC111453661 [Cucurbita moschata]	[more]
XP_023545100.1	4.9e-62	92.47	uncharacterized protein LOC111804503 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10016287 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10016287 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMU4	1.0e-65	94.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510240 PE=4 SV=1	[more]
A0A5D3CLN1	8.7e-65	93.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DU11	8.7e-65	93.24	uncharacterized protein LOC103485204 OS=Cucumis melo OX=3656 GN=LOC103485204 PE=...	[more]
A0A6J1GFB4	1.8e-62	92.47	uncharacterized protein LOC111453661 OS=Cucurbita moschata OX=3662 GN=LOC1114536...	[more]
A0A6J1ITW9	9.0e-62	91.78	uncharacterized protein LOC111478385 OS=Cucurbita maxima OX=3661 GN=LOC111478385...	[more]

BLAST of HG10016287 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51500.1	9.3e-19	52.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 97..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..79
None	No IPR available	PANTHER	PTHR37740	OS02G0193500 PROTEIN	coord: 5..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016287.1	HG10016287.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0046983	protein dimerization activity